| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPB_3939 |
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| Symbol | |
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| ID | 3911746 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris HaA2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007778 |
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| Strand | - |
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| Start bp | 4495440 |
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| End bp | 4496240 |
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| Gene Length | 801 bp |
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| Protein Length | 266 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 637885843 |
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| Product | short-chain dehydrogenase/reductase SDR |
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| Protein accession | YP_487543 |
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| Protein GI | 86751047 |
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| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
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| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.0544906 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCAGGTTG CGGGCAAGGT CGTCGTCGTC ACCGGCGGCG GCAATGGAAT CGGTCAGGCG
ATGTGCGAGG CCTTTGCCAA GGCCGGCGCC GCCAAGGTCG TGGTCGCCGA TCTCGATGAG
GCCCGCGCCG AGGCGGTGGC CGCCGCGATC GGCGGCGCGG CGTTCAAATG CGACGTCGCG
AAAGAATCCG ACATCAAGCA CGTGATCGAC GAGACCGAGC GGCGCTTCGG CCCGATCGCG
CTGTTCTGCT CCAATGCGGG GATCGGCGGC GGCTTCGATC CGCTGTCGGA GAATGCCGGC
GGCGCGTCCG ACGAGCCGTT CATGAACAGC TGGATGATCC ACGTGATGGC GCATGTCTAT
GCCGCACGGC ATCTGGTGCC GCTCTACAGA GCGCGCGGCG GCGGCTATTT CCTCAACACG
ATTTCGGCGG CGGGCCTGTT GTCGCAGGTC GGCAGCCCGG CCTATTCGGC GACCAAGCAC
GGCGCGGTGG GCTTCGCCGA AAATCTCGCG ATCTCGCACA AGGCGCACAA CATCAAGGTC
TCGATCCTGT GCCCGCAGGG CGTCGACACC AACATGCTGC GCGGGCTGCC GAAGGGCCCG
CAATCCGCCG ACGGCGATCT CAGCCCCGAG CAGGTCGCGC AGGACGTGAT CGAGGGGCTC
GCCGAAGAGA GCTTCCTGAT CCTACCGCAC AAGCAGGTGA TCGACTACAT GCGCAAGAAG
ACCGAGAACT ACGACCGCTG GATCGGCGGC ATGGCCAAGA TCCAGGCGAA ATTGCGCGAG
ACGTTCGGCG CGAAGGGGTA G
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| Protein sequence | MQVAGKVVVV TGGGNGIGQA MCEAFAKAGA AKVVVADLDE ARAEAVAAAI GGAAFKCDVA
KESDIKHVID ETERRFGPIA LFCSNAGIGG GFDPLSENAG GASDEPFMNS WMIHVMAHVY
AARHLVPLYR ARGGGYFLNT ISAAGLLSQV GSPAYSATKH GAVGFAENLA ISHKAHNIKV
SILCPQGVDT NMLRGLPKGP QSADGDLSPE QVAQDVIEGL AEESFLILPH KQVIDYMRKK
TENYDRWIGG MAKIQAKLRE TFGAKG
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