Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RPC_4268 |
Symbol | |
ID | 3971691 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodopseudomonas palustris BisB18 |
Kingdom | Bacteria |
Replicon accession | NC_007925 |
Strand | - |
Start bp | 4752962 |
End bp | 4753771 |
Gene Length | 810 bp |
Protein Length | 269 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 637927372 |
Product | short-chain dehydrogenase/reductase SDR |
Protein accession | YP_534111 |
Protein GI | 90425741 |
COG category | [R] General function prediction only |
COG ID | [COG0300] Short-chain dehydrogenases of various substrate specificities |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 0.52559 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 16 |
Fosmid unclonability p-value | 0.660743 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCAGGTCG CCGGCAAAAT CGTGGTCGTG ACCGGAGGCG CCAATGGTAT CGGCCAGGCG CTGTGCGAGG CGTCGCATCG CGCCGGCGCC GCCAAGGTGG TCGTCTCCGA TCTGGATCTG GCGCGCGCCG AACAGGTCGC CGCTTCGATC GATGGCGCGG CGTTCAAATG CGACGTCGGC CGGGAGGCTG ACATCGCGCA TCTGATCGGC GAGACCGAGC GGCAATTCGG GCCGATTGCG CTGTTCTGCT CCAACGCCGG AATCGGCGGC GGTTTTGATC CATTGTCGGA GAATGCCGGC GGTGCCTCCG ACGAGCCGTG GGAGAAGAGC TGGGCGATCC ATGTGATGGC GCACGTCCAT GCCGCGCGGC ATCTGATCCC GCTCTACAAG GCGCGCGGCG GCGGCTATTT CCTCAACACC ATTTCGGCGG CGGGTCTGTT GTCGCAGGTC GGCAGCCCGG CCTATTCCAC TACCAAGCAC GCCGCGGTCG GCTTCGCCGA AAACCTCGCG ATCTCGCATC GCGCCGACGG CATCAAGGTG TCGATCCTGT GCCCGCAGGG CGTCGATACC AACATGCTGC GCGCGATCCC CAAGGGCCCG CAATCCGGCG ACGGCGATCT GTCGCCGGAG GAAGTGGCTC GGGTTGCGCT GGAGGGCGTC GCCGAGGAGC GCTTCCTGAT CCTGCCGCAT CCACAGGTGC TGGGCTATAT GCGCGCCAAG ACCGAGAACT ACGATCGCTG GCTCGGCGGC ATGGCCAAGA TCCAAGCCAA GATGCGCGAC GCCTATCGGG CGACGGCGAA GGCGGGGTGA
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Protein sequence | MQVAGKIVVV TGGANGIGQA LCEASHRAGA AKVVVSDLDL ARAEQVAASI DGAAFKCDVG READIAHLIG ETERQFGPIA LFCSNAGIGG GFDPLSENAG GASDEPWEKS WAIHVMAHVH AARHLIPLYK ARGGGYFLNT ISAAGLLSQV GSPAYSTTKH AAVGFAENLA ISHRADGIKV SILCPQGVDT NMLRAIPKGP QSGDGDLSPE EVARVALEGV AEERFLILPH PQVLGYMRAK TENYDRWLGG MAKIQAKMRD AYRATAKAG
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