| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bcav_3510 |
|---|
| Symbol | |
|---|
| ID | 7858405 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Beutenbergia cavernae DSM 12333 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012669 |
|---|
| Strand | + |
|---|
| Start bp | 3903562 |
|---|
| End bp | 3904317 |
|---|
| Gene Length | 756 bp |
|---|
| Protein Length | 251 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | 643867613 |
|---|
| Product | short-chain dehydrogenase/reductase SDR |
|---|
| Protein accession | YP_002883514 |
|---|
| Protein GI | 229821988 |
|---|
| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
|---|
| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 19 |
|---|
| Fosmid unclonability p-value | 0.439576 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGGACAGT TCGACGGCAA GGTAGCGATC GTCACCGGCG GAGGCTCCGG CCTCGGCGAG
GCGATCAGCA CCGAGCTCGC GGCGAAGGGC GCGCAGGTCG TCGTCACGGA CATCGACCTG
GCGTCGGCGC AGCGCGTGGT CGGCGCGATC GAGGCGGCGG GCGGCACGGC GACAGCGATC
CAGCAGGACA CGGCGAAGCC GGAGGGCAGC GAGCGGGTGG TCGACCACGC CGTCGCGACG
TACGGCGGCC TCCACCTCGC CGTCAACAAC GCCGGCATCG GCGGGCGTCA GGCCCCGGCC
GGCGACGTCG ACCTCGCCGA CTGGGACCGC GTCATCGCGA TCAACCTCAA CGGCGTCATG
TACGGGATGC GCTACGAGAT CCCGGCCATG CTCGCGACGG CGGACGGCGC CGGCTCGATC
GTCAACATGG CGTCGATCCA CGGCACCGTC GCCGCGCCCG GGAACGGCGC GTACACGGCG
GCCAAGCACG GCGTCGTCGG CGTCACCAAG AACGCGGCGG CGGAGTACGG GGCGCAGGGG
TTGCGCGTCA ACGCCGTCGG CCCCGGCTAC ATCGACACGC CCCTGCTGCG GGACCTGCCG
GCGCAGGCGC GGGAGTTGCT CGTGACGAAG CACCCGCTCG GCCGGCTCGG CCGTGCCGAG
GAGGTCGCGC ACCTCGTGTG CTTCCTGCTG TCCGACGACG CGAGCTTCAT CACCGGCAGC
TACCACCTCG TCGACGGCGG CTACACCGCC GTGTAG
|
|---|
| Protein sequence | MGQFDGKVAI VTGGGSGLGE AISTELAAKG AQVVVTDIDL ASAQRVVGAI EAAGGTATAI
QQDTAKPEGS ERVVDHAVAT YGGLHLAVNN AGIGGRQAPA GDVDLADWDR VIAINLNGVM
YGMRYEIPAM LATADGAGSI VNMASIHGTV AAPGNGAYTA AKHGVVGVTK NAAAEYGAQG
LRVNAVGPGY IDTPLLRDLP AQARELLVTK HPLGRLGRAE EVAHLVCFLL SDDASFITGS
YHLVDGGYTA V
|
|---|
| |