| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RSc1769 |
|---|
| Symbol | |
|---|
| ID | 1220607 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia solanacearum GMI1000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_003295 |
|---|
| Strand | + |
|---|
| Start bp | 1896181 |
|---|
| End bp | 1897083 |
|---|
| Gene Length | 903 bp |
|---|
| Protein Length | 300 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 637238161 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | NP_519890 |
|---|
| Protein GI | 17546488 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG4221] Short-chain alcohol dehydrogenase of unknown specificity |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.657278 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.187147 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAGCAAT TCGCGGGCGG CGTGGCCGTC ATCACGGGCG GTGCATCGGG CTTCGGCAAG
GCATTCGCCA GGCTCGGCGC CGGACTGGGC ATGAAGCTGG TGCTGGCCGA CATCCAGCAG
GACGCGCTGG ATGCCGCCGT GGCCGGGTTC CGGGCGCAGG GCGTCGAGGT CATCGGCGTG
CGCGTCGACG TGTCCAGGGA GGCGGACGTG CAGGCGCTGG CCGATGCGGC CATCCGGACC
TTCGGCAAGG TCAACCTGCT GTTCAACAAC GCCGGGGTCG GGGCGGGCGG CCTGATCTGG
GAGAACTCCC AACAGGACTG GGACTGGGTG CTCGGCGTCA ACCTGCATGG CGTGATCCAC
GGCGTGCGCA TCTTCACGCC GCTGATGCTG GCCGAGGCCG CGAAGGACCC GTCCTACGCG
GGCCATATCG TCAACACGGC GTCGATGGCG GGGCTGCTCA ATGCGCCGGC CATGGGCATC
TACAACGTCT CCAAGCACGC CGTGGTGGCG CTGACGGAGT CGCTCTACCA GGACCTGAGC
CTGGTGACGG AGCAGATCCG CTGCTCGGTG CTGTGTCCGT ATTTCGTGCC GACCGGCATC
ACGCAGTCGC ATCGCAACCG CCCGCAGGAC CTGGCCAATG CCGCGCCGCC CACCCGGTCG
CAGCTGGTGG CCCAGGCCAT GACCGACAAG GCCGTCAGCG CCGGCAAGGT GAGCGCCGAG
CAGGTCGGCC AGATGACGTT CGATGCCATC CGGGACGAAC GTTTCTATAT TTATTCGCAT
CCGCACGCGC TGGCGCCGGT GCAGCACCGC TTTGAAGACA TCGTCTCGCA GCGCAACCCG
TCCGATCCGT TCGAGGGCAA GCCGGACGTG CGGGCGCGTC TGGTCGAGTC GCTGCGCGGC
TGA
|
|---|
| Protein sequence | MKQFAGGVAV ITGGASGFGK AFARLGAGLG MKLVLADIQQ DALDAAVAGF RAQGVEVIGV
RVDVSREADV QALADAAIRT FGKVNLLFNN AGVGAGGLIW ENSQQDWDWV LGVNLHGVIH
GVRIFTPLML AEAAKDPSYA GHIVNTASMA GLLNAPAMGI YNVSKHAVVA LTESLYQDLS
LVTEQIRCSV LCPYFVPTGI TQSHRNRPQD LANAAPPTRS QLVAQAMTDK AVSAGKVSAE
QVGQMTFDAI RDERFYIYSH PHALAPVQHR FEDIVSQRNP SDPFEGKPDV RARLVESLRG
|
|---|
| |