Gene PP_1946 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPP_1946 
Symbol 
ID1043114 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas putida KT2440 
KingdomBacteria 
Replicon accessionNC_002947 
Strand
Start bp2201352 
End bp2202140 
Gene Length789 bp 
Protein Length262 aa 
Translation table11 
GC content57% 
IMG OID637145351 
Productshort chain dehydrogenase/reductase family oxidoreductase 
Protein accessionNP_744098 
Protein GI26988673 
COG category[I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only 
COG ID[COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.000000538802 
Fosmid HitchhikerNo 
Fosmid clonabilityunclonable 
 

Sequence

Gene sequence
ATGACAGTCA ATTATGATTT TTCCGGAAAA GTCGTGCTGG TTACCGGCGC TGGCTCTGGT 
ATTGGCCGTG CCACTGCGCT TGCCTTCGCG CAGTCGGGCG CATCCGTTGC GGTCGCAGAC
ATCTCGACTG ACCACGGTTT GAAAACCGTA GAGTTGGTCA AAGCCGAAGG AGGCGAGGCG
ACCTTCTTCC ATGTCGATGT AGGCTCTGAA CCCAGCGTCC AGTCGATGCT GGCTGGTGTC
GTGGCGCATT ACGGCGGCCT GGACATTGCG CACAACAACG CCGGCATTGA GGCCAATATC
GTGCCGCTGG CCGAGCTGGA CTCCGACAAC TGGCGTCGTG TCATCGATGT GAACCTTTCC
TCGGTGTTCT ATTGCCTGAA AGGTGAAATC CCTCTGATGC TGAAAAGGGG CGGCGGCGCC
ATTGTGAATA CCGCATCGGC CTCCGGGCTG ATTGGCGGCT ATCGCCTTTC CGGGTATACC
GCCACGAAGC ACGGCGTAGT GGGGCTGACT AAGGCTGCTG CTATCGATTA TGCAAACCAG
AATATCCGGA TTAATGCCGT GTGCCCTGGT CCAGTTGACT CCCCATTCCT GGCTGACATG
CCGCAACCCA TGCGCGATCG ACTTCTCTTT GGCACTCCAA TTGGACGATT GGCCACCGCA
GAGGAGATCG CGCGTTCGGT TCTGTGGCTG TGTTCTGACG ATGCAAAATA CGTGGTGGGC
CATTCGATGT CAGTCGACGG TGGCGTGGCA GTGACTGCGG TTGGTACTCG AATGGATGAT
CTCTTTTAA
 
Protein sequence
MTVNYDFSGK VVLVTGAGSG IGRATALAFA QSGASVAVAD ISTDHGLKTV ELVKAEGGEA 
TFFHVDVGSE PSVQSMLAGV VAHYGGLDIA HNNAGIEANI VPLAELDSDN WRRVIDVNLS
SVFYCLKGEI PLMLKRGGGA IVNTASASGL IGGYRLSGYT ATKHGVVGLT KAAAIDYANQ
NIRINAVCPG PVDSPFLADM PQPMRDRLLF GTPIGRLATA EEIARSVLWL CSDDAKYVVG
HSMSVDGGVA VTAVGTRMDD LF