| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_2680 |
|---|
| Symbol | |
|---|
| ID | 5107831 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas mendocina ymp |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009439 |
|---|
| Strand | - |
|---|
| Start bp | 2940021 |
|---|
| End bp | 2940782 |
|---|
| Gene Length | 762 bp |
|---|
| Protein Length | 253 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 640503924 |
|---|
| Product | short chain dehydrogenase |
|---|
| Protein accession | YP_001188167 |
|---|
| Protein GI | 146307702 |
|---|
| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
|---|
| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 0.313407 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 40 |
|---|
| Fosmid unclonability p-value | 0.819387 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCATGA CGTTTTCCGG CCAGGTCGCC CTGGTCACCG GCGCTGCCGC CGGTATTGGC
CGCGCCACCG CCCAGGCGTT TGCCGCCGAA GGGCTGAAGG TGGTGGTCTC CGACGTGGAC
GTGGCAGGCG GCGAGGGCAC CGTCGAGCTG ATTCGCGCGG CCGGTGGCGA AGCCTGCTTC
GTGCGTTGCG ACGTGACCCG CGACGCCGAG GTCAGGGCGC TGATGGACGC CACCATGGCG
CAATACGGCC GCCTGGATTA CGCCTTCAAC AACGCCGGTA TCGAGATCGA GCAGGGCAAG
CTGGCCGACG GCAACGAGGC CGAGTTCGAC GCCATCATGG GCGTCAACGT CAAGGGCGTG
TGGCTGTGCA TGAAGCATCA GATCCCGCTG ATGCTGGCTC AGGGCGCTGG CGCCATCGTC
AACACGGCAT CGGTGGCGGG CCTCGGCGCG GCGCCGAAGA TGAGCATCTA CGCCGCTTCC
AAGCATGCGG TGATCGGCCT GACCAAGTCC GCGGCGGTGG AATATGCGAA GAAGAAAATC
CGCGTCAATG CGGTGTGCCC GGCGGTGATC GACACCGACA TGTTCCGCCG CGCCTATGAA
GCCGATCCGA AGAAGGCCGA GTTCGCCGCC GCCATGCATC CGGTCGGGCG CATCGGCAAG
GTCGAGGAGA TTGCCGCCGC CGTACTCTAT CTGTGCAGCG ATCACGCTGC GTTCACCACC
GGCCAGGCGC TGGCGGTGGA CGGTGGGGCC ACGGCGATCT GA
|
|---|
| Protein sequence | MSMTFSGQVA LVTGAAAGIG RATAQAFAAE GLKVVVSDVD VAGGEGTVEL IRAAGGEACF
VRCDVTRDAE VRALMDATMA QYGRLDYAFN NAGIEIEQGK LADGNEAEFD AIMGVNVKGV
WLCMKHQIPL MLAQGAGAIV NTASVAGLGA APKMSIYAAS KHAVIGLTKS AAVEYAKKKI
RVNAVCPAVI DTDMFRRAYE ADPKKAEFAA AMHPVGRIGK VEEIAAAVLY LCSDHAAFTT
GQALAVDGGA TAI
|
|---|
| |