More than 300 homologs were found in PanDaTox collection
for query gene RPC_4510 on replicon NC_007925
Organism: Rhodopseudomonas palustris BisB18



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_007925  RPC_4510  response regulator receiver domain-containing protein  100 
 
 
310 aa  633  1e-180  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal  0.078722 
 
 
-
 
NC_008576  Mmc1_1537  response regulator receiver protein  36.64 
 
 
311 aa  173  2.9999999999999996e-42  Magnetococcus sp. MC-1  Bacteria  normal  0.376192  normal 
 
 
-
 
NC_007298  Daro_0110  response regulator receiver  35.25 
 
 
296 aa  167  2e-40  Dechloromonas aromatica RCB  Bacteria  normal  normal 
 
 
-
 
NC_008576  Mmc1_0241  response regulator receiver protein  33.33 
 
 
309 aa  163  3e-39  Magnetococcus sp. MC-1  Bacteria  normal  normal 
 
 
-
 
NC_008576  Mmc1_2442  response regulator receiver protein  34.01 
 
 
292 aa  159  4e-38  Magnetococcus sp. MC-1  Bacteria  normal  0.0259595  normal 
 
 
-
 
NC_007520  Tcr_0195  response regulator receiver domain-containing protein  31.94 
 
 
300 aa  157  2e-37  Thiomicrospira crunogena XCL-2  Bacteria  normal  n/a   
 
 
-
 
NC_008576  Mmc1_2440  response regulator receiver protein  31.71 
 
 
310 aa  144  3e-33  Magnetococcus sp. MC-1  Bacteria  normal  0.814806  normal 
 
 
-
 
NC_008347  Mmar10_0280  hypothetical protein  31.61 
 
 
287 aa  91.7  1e-17  Maricaulis maris MCS10  Bacteria  normal  0.0146684  normal 
 
 
-
 
NC_013522  Taci_0357  CheA signal transduction histidine kinase  42.34 
 
 
695 aa  90.9  3e-17  Thermanaerovibrio acidaminovorans DSM 6589  Bacteria  normal  n/a   
 
 
-
 
NC_008700  Sama_0065  response regulator receiver protein  30.59 
 
 
305 aa  83.2  0.000000000000005  Shewanella amazonensis SB2B  Bacteria  normal  normal 
 
 
-
 
NC_011146  Gbem_2025  response regulator receiver sensor signal transduction histidine kinase  35.43 
 
 
452 aa  82  0.00000000000001  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_013385  Adeg_1011  two component transcriptional regulator, winged helix family  40.38 
 
 
231 aa  82  0.00000000000001  Ammonifex degensii KC4  Bacteria  normal  n/a   
 
 
-
 
NC_012918  GM21_2194  response regulator receiver sensor signal transduction histidine kinase  33.86 
 
 
452 aa  80.5  0.00000000000003  Geobacter sp. M21  Bacteria  n/a    normal  0.514859 
 
 
-
 
NC_011884  Cyan7425_5215  two component transcriptional regulator, LuxR family  32.06 
 
 
217 aa  80.1  0.00000000000004  Cyanothece sp. PCC 7425  Bacteria  normal  normal 
 
 
-
 
NC_013173  Dbac_0022  GAF sensor hybrid histidine kinase  35.96 
 
 
1356 aa  79.7  0.00000000000006  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  n/a   
 
 
-
 
NC_007517  Gmet_2790  response regulator receiver sensor signal transduction histidine kinase  37.61 
 
 
463 aa  79.3  0.00000000000007  Geobacter metallireducens GS-15  Bacteria  normal  normal 
 
 
-
 
NC_010338  Caul_1497  response regulator PleD  41.9 
 
 
454 aa  79.3  0.00000000000008  Caulobacter sp. K31  Bacteria  normal  normal  0.122959 
 
 
-
 
NC_008347  Mmar10_1277  response regulator receiver modulated diguanylate cyclase  40.57 
 
 
454 aa  79.3  0.00000000000008  Maricaulis maris MCS10  Bacteria  normal  0.410696  normal  0.0388481 
 
 
-
 
NC_008576  Mmc1_2455  response regulator receiver modulated metal dependent phosphohydrolase  39.26 
 
 
376 aa  79  0.00000000000009  Magnetococcus sp. MC-1  Bacteria  normal  0.46136  normal  0.292815 
 
 
-
 
NC_007964  Nham_2442  response regulator PleD  41.12 
 
 
457 aa  78.6  0.0000000000001  Nitrobacter hamburgensis X14  Bacteria  normal  0.696702  n/a   
 
 
-
 
NC_013037  Dfer_0393  histidine kinase  36.84 
 
 
1200 aa  78.6  0.0000000000001  Dyadobacter fermentans DSM 18053  Bacteria  normal  normal  0.564913 
 
 
-
 
NC_002939  GSU2219  response regulator  40 
 
 
123 aa  78.2  0.0000000000002  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_007298  Daro_0347  PAS  35.92 
 
 
513 aa  78.2  0.0000000000002  Dechloromonas aromatica RCB  Bacteria  normal  unclonable  0.000000072068 
 
 
-
 
NC_013525  Tter_0789  response regulator receiver protein  34.55 
 
 
278 aa  77.8  0.0000000000002  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_011365  Gdia_3078  CheA signal transduction histidine kinase  39.62 
 
 
719 aa  78.2  0.0000000000002  Gluconacetobacter diazotrophicus PAl 5  Bacteria  normal  decreased coverage  0.00446051 
 
 
-
 
NC_007298  Daro_3553  response regulator receiver  32.48 
 
 
384 aa  77.4  0.0000000000003  Dechloromonas aromatica RCB  Bacteria  normal  0.739627  normal 
 
 
-
 
NC_007413  Ava_2324  two component LuxR family transcriptional regulator  28.45 
 
 
245 aa  77.4  0.0000000000003  Anabaena variabilis ATCC 29413  Bacteria  normal  0.42123  normal 
 
 
-
 
NC_007484  Noc_2401  phosphate regulon transcriptional regulatory protein phoB  42.2 
 
 
229 aa  77.4  0.0000000000003  Nitrosococcus oceani ATCC 19707  Bacteria  normal  n/a   
 
 
-
 
NC_008346  Swol_0600  response regulator receiver protein  33.09 
 
 
301 aa  77  0.0000000000003  Syntrophomonas wolfei subsp. wolfei str. Goettingen  Bacteria  normal  n/a   
 
 
-
 
NC_013739  Cwoe_5515  response regulator receiver protein  40.34 
 
 
134 aa  77.4  0.0000000000003  Conexibacter woesei DSM 14684  Bacteria  normal  normal 
 
 
-
 
NC_010717  PXO_02637  regulatory protein PilH family  38.21 
 
 
128 aa  77  0.0000000000003  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  n/a   
 
 
-
 
NC_007406  Nwi_1432  response regulator PleD  42.2 
 
 
457 aa  77  0.0000000000004  Nitrobacter winogradskyi Nb-255  Bacteria  normal  normal 
 
 
-
 
NC_013172  Bfae_20650  response regulator with CheY-like receiver domain and winged-helix DNA-binding domain  41.07 
 
 
231 aa  77  0.0000000000004  Brachybacterium faecium DSM 4810  Bacteria  normal  0.0260682  n/a   
 
 
-
 
NC_007796  Mhun_1941  response regulator receiver domain-containing protein  39.42 
 
 
156 aa  76.6  0.0000000000004  Methanospirillum hungatei JF-1  Archaea  normal  normal 
 
 
-
 
NC_009767  Rcas_3134  response regulator receiver protein  33.11 
 
 
200 aa  77  0.0000000000004  Roseiflexus castenholzii DSM 13941  Bacteria  normal  normal 
 
 
-
 
NC_007519  Dde_1942  metal dependent phosphohydrolase  38.26 
 
 
363 aa  76.6  0.0000000000005  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  0.284574  n/a   
 
 
-
 
NC_007778  RPB_2413  response regulator PleD  40.19 
 
 
457 aa  76.6  0.0000000000005  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.592932  normal  0.173821 
 
 
-
 
NC_007925  RPC_3308  response regulator PleD  41.12 
 
 
457 aa  76.6  0.0000000000005  Rhodopseudomonas palustris BisB18  Bacteria  normal  0.268667  normal 
 
 
-
 
NC_007958  RPD_3038  response regulator PleD  41.12 
 
 
457 aa  76.6  0.0000000000005  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.372566  normal  0.319547 
 
 
-
 
NC_011004  Rpal_3541  response regulator PleD  40.19 
 
 
457 aa  76.6  0.0000000000005  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_011662  Tmz1t_1352  response regulator receiver protein  36.36 
 
 
410 aa  76.3  0.0000000000006  Thauera sp. MZ1T  Bacteria  normal  n/a   
 
 
-
 
NC_008009  Acid345_4060  response regulator receiver modulated metal dependent phosphohydrolase  37.4 
 
 
365 aa  76.3  0.0000000000006  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  normal  0.0748941 
 
 
-
 
NC_011884  Cyan7425_0981  two component transcriptional regulator, LuxR family  34.59 
 
 
221 aa  76.3  0.0000000000006  Cyanothece sp. PCC 7425  Bacteria  normal  normal  0.416641 
 
 
-
 
NC_013757  Gobs_4657  two component transcriptional regulator, winged helix family  44.17 
 
 
240 aa  76.3  0.0000000000006  Geodermatophilus obscurus DSM 43160  Bacteria  normal  n/a   
 
 
-
 
NC_011891  A2cp1_3829  response regulator receiver protein  40.74 
 
 
713 aa  75.9  0.0000000000008  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  0.0106552  n/a   
 
 
-
 
NC_008347  Mmar10_2174  hypothetical protein  34.78 
 
 
297 aa  75.9  0.0000000000008  Maricaulis maris MCS10  Bacteria  normal  0.0803521  normal 
 
 
-
 
NC_013440  Hoch_3251  response regulator receiver sensor signal transduction histidine kinase  34.4 
 
 
418 aa  75.9  0.0000000000008  Haliangium ochraceum DSM 14365  Bacteria  normal  0.35487  normal  0.0265543 
 
 
-
 
NC_007760  Adeh_3688  response regulator receiver domain-containing protein  40.74 
 
 
718 aa  75.9  0.0000000000009  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  n/a   
 
 
-
 
NC_011145  AnaeK_3746  response regulator receiver protein  40.74 
 
 
714 aa  75.9  0.0000000000009  Anaeromyxobacter sp. K  Bacteria  normal  0.374039  n/a   
 
 
-
 
NC_009712  Mboo_1464  multi-sensor signal transduction histidine kinase  30.6 
 
 
579 aa  75.5  0.000000000001  Candidatus Methanoregula boonei 6A8  Archaea  normal  0.164507  normal 
 
 
-
 
NC_011831  Cagg_2467  response regulator receiver modulated serine phosphatase  33.33 
 
 
385 aa  75.5  0.000000000001  Chloroflexus aggregans DSM 9485  Bacteria  normal  normal 
 
 
-
 
NC_011894  Mnod_7417  response regulator receiver modulated diguanylate cyclase  41.9 
 
 
457 aa  75.1  0.000000000001  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.196799  n/a   
 
 
-
 
NC_012918  GM21_1942  response regulator receiver protein  41.82 
 
 
280 aa  75.5  0.000000000001  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_010524  Lcho_2452  response regulator receiver modulated metal dependent phosphohydrolase  31.25 
 
 
377 aa  75.5  0.000000000001  Leptothrix cholodnii SP-6  Bacteria  n/a    hitchhiker  0.00101758 
 
 
-
 
NC_009485  BBta_4746  response regulator PleD  40.38 
 
 
466 aa  75.5  0.000000000001  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.0979514  normal  0.753316 
 
 
-
 
NC_011830  Dhaf_1561  response regulator receiver modulated diguanylate cyclase  34.88 
 
 
455 aa  75.5  0.000000000001  Desulfitobacterium hafniense DCB-2  Bacteria  hitchhiker  0.0000000734361  n/a   
 
 
-
 
NC_008554  Sfum_2892  two component transcriptional regulator  34.48 
 
 
227 aa  75.5  0.000000000001  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  normal  0.0239565 
 
 
-
 
NC_008576  Mmc1_2393  response regulator receiver sensor hybrid histidine kinase  37.39 
 
 
518 aa  75.5  0.000000000001  Magnetococcus sp. MC-1  Bacteria  normal  0.991201  normal  0.0787545 
 
 
-
 
NC_013757  Gobs_1518  response regulator receiver modulated diguanylate cyclase  40.19 
 
 
767 aa  75.1  0.000000000001  Geodermatophilus obscurus DSM 43160  Bacteria  normal  0.0706082  n/a   
 
 
-
 
NC_009621  Smed_5118  CheA signal transduction histidine kinase  39.81 
 
 
707 aa  75.5  0.000000000001  Sinorhizobium medicae WSM419  Bacteria  normal  0.179318  normal  0.034812 
 
 
-
 
NC_011984  Avi_9103  multi-sensor hybrid histidine kinase  35.29 
 
 
1145 aa  75.5  0.000000000001  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_002939  GSU1671  response regulator/GGDEF domain-containing protein  33.58 
 
 
322 aa  74.7  0.000000000002  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_004578  PSPTO_4080  DNA-binding response regulator, LuxR family  36.54 
 
 
222 aa  75.1  0.000000000002  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.542388  n/a   
 
 
-
 
NC_007413  Ava_2562  response regulator receiver Signal transduction histidine kinase  36.52 
 
 
437 aa  74.3  0.000000000002  Anabaena variabilis ATCC 29413  Bacteria  normal  normal 
 
 
-
 
NC_007498  Pcar_1055  two component signal transduction response regulator  30.5 
 
 
734 aa  74.7  0.000000000002  Pelobacter carbinolicus DSM 2380  Bacteria  normal  0.0148851  n/a   
 
 
-
 
NC_013730  Slin_2107  two component transcriptional regulator, AraC family  32.26 
 
 
1349 aa  74.7  0.000000000002  Spirosoma linguale DSM 74  Bacteria  decreased coverage  0.000288147  normal  0.419692 
 
 
-
 
NC_013739  Cwoe_5905  two component transcriptional regulator, winged helix family  32.38 
 
 
237 aa  74.3  0.000000000002  Conexibacter woesei DSM 14684  Bacteria  normal  normal 
 
 
-
 
NC_007955  Mbur_0695  response regulator receiver  40 
 
 
170 aa  74.7  0.000000000002  Methanococcoides burtonii DSM 6242  Archaea  normal  0.412637  n/a   
 
 
-
 
NC_009675  Anae109_3814  response regulator receiver protein  40.74 
 
 
735 aa  74.7  0.000000000002  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  0.706947  hitchhiker  0.0056347 
 
 
-
 
NC_011146  Gbem_0743  response regulator receiver protein  36.79 
 
 
132 aa  74.7  0.000000000002  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_010511  M446_6679  response regulator receiver modulated diguanylate cyclase  41.9 
 
 
457 aa  74.7  0.000000000002  Methylobacterium sp. 4-46  Bacteria  normal  normal 
 
 
-
 
NC_008576  Mmc1_3408  response regulator receiver modulated metal dependent phosphohydrolase  32.89 
 
 
346 aa  74.3  0.000000000002  Magnetococcus sp. MC-1  Bacteria  normal  normal 
 
 
-
 
NC_010581  Bind_1213  response regulator receiver modulated diguanylate cyclase  37.14 
 
 
457 aa  74.7  0.000000000002  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  normal 
 
 
-
 
NC_010725  Mpop_0148  response regulator receiver sensor signal transduction histidine kinase  36.88 
 
 
1048 aa  74.3  0.000000000002  Methylobacterium populi BJ001  Bacteria  normal  normal  0.872071 
 
 
-
 
NC_008752  Aave_3524  two component LuxR family transcriptional regulator  41.35 
 
 
353 aa  74.3  0.000000000002  Acidovorax citrulli AAC00-1  Bacteria  normal  0.406085  normal  0.428998 
 
 
-
 
NC_011666  Msil_1887  adenylate/guanylate cyclase  42.99 
 
 
403 aa  75.1  0.000000000002  Methylocella silvestris BL2  Bacteria  n/a    normal  0.522729 
 
 
-
 
NC_010172  Mext_0967  diguanylate cyclase  41.9 
 
 
457 aa  73.9  0.000000000003  Methylobacterium extorquens PA1  Bacteria  normal  0.555277  normal  0.0207283 
 
 
-
 
NC_010524  Lcho_3544  response regulator receiver modulated diguanylate cyclase  40.17 
 
 
322 aa  73.9  0.000000000003  Leptothrix cholodnii SP-6  Bacteria  n/a    normal  0.0106122 
 
 
-
 
NC_013440  Hoch_4952  response regulator receiver protein  36.45 
 
 
317 aa  74.3  0.000000000003  Haliangium ochraceum DSM 14365  Bacteria  normal  normal 
 
 
-
 
NC_007413  Ava_2563  periplasmic sensor hybrid histidine kinase  35.96 
 
 
935 aa  73.9  0.000000000003  Anabaena variabilis ATCC 29413  Bacteria  normal  normal  0.851477 
 
 
-
 
NC_007413  Ava_3616  response regulator receiver Signal transduction histidine kinase  34.23 
 
 
393 aa  73.9  0.000000000003  Anabaena variabilis ATCC 29413  Bacteria  normal  0.159723  normal  0.789101 
 
 
-
 
NC_007484  Noc_0130  response regulator receiver  37.04 
 
 
121 aa  74.3  0.000000000003  Nitrosococcus oceani ATCC 19707  Bacteria  normal  n/a   
 
 
-
 
NC_009664  Krad_0332  response regulator receiver protein  42.72 
 
 
806 aa  73.9  0.000000000003  Kineococcus radiotolerans SRS30216  Bacteria  normal  0.112355  normal  0.937153 
 
 
-
 
NC_013161  Cyan8802_0417  CheA signal transduction histidine kinase  36.75 
 
 
896 aa  73.9  0.000000000003  Cyanothece sp. PCC 8802  Bacteria  normal  0.0485913  normal 
 
 
-
 
NC_012791  Vapar_4238  two component transcriptional regulator, LuxR family  37.5 
 
 
356 aa  73.9  0.000000000003  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_011666  Msil_0424  response regulator receiver modulated diguanylate cyclase  40 
 
 
469 aa  73.9  0.000000000003  Methylocella silvestris BL2  Bacteria  n/a    normal  0.97349 
 
 
-
 
NC_011757  Mchl_0931  response regulator receiver modulated diguanylate cyclase  41.9 
 
 
457 aa  73.9  0.000000000003  Methylobacterium chloromethanicum CM4  Bacteria  normal  0.436852  normal  0.104843 
 
 
-
 
NC_009483  Gura_1496  multi-sensor signal transduction histidine kinase  35.19 
 
 
679 aa  73.9  0.000000000003  Geobacter uraniireducens Rf4  Bacteria  normal  0.381542  n/a   
 
 
-
 
NC_010506  Swoo_1961  multi-sensor hybrid histidine kinase  34.78 
 
 
1713 aa  73.9  0.000000000003  Shewanella woodyi ATCC 51908  Bacteria  normal  0.280335  normal  0.123564 
 
 
-
 
NC_010814  Glov_3603  response regulator receiver protein  36.21 
 
 
131 aa  73.9  0.000000000003  Geobacter lovleyi SZ  Bacteria  normal  0.656399  n/a   
 
 
-
 
NC_011726  PCC8801_0407  CheA signal transduction histidine kinase  36.44 
 
 
896 aa  73.9  0.000000000003  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_012560  Avin_29290  hybrid histidine protein kinase  37.74 
 
 
826 aa  73.6  0.000000000004  Azotobacter vinelandii DJ  Bacteria  normal  n/a   
 
 
-
 
NC_009675  Anae109_0469  CheA signal transduction histidine kinase  37.7 
 
 
830 aa  73.6  0.000000000004  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  0.153889  normal  0.631146 
 
 
-
 
NC_014248  Aazo_4464  integral membrane sensor hybrid histidine kinase  35.2 
 
 
945 aa  73.6  0.000000000004  'Nostoc azollae' 0708  Bacteria  normal  n/a   
 
 
-
 
NC_011883  Ddes_1054  response regulator receiver modulated metal dependent phosphohydrolase  36.21 
 
 
359 aa  73.6  0.000000000004  Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774  Bacteria  normal  n/a   
 
 
-
 
NC_012918  GM21_0758  response regulator receiver protein  36.79 
 
 
132 aa  73.6  0.000000000004  Geobacter sp. M21  Bacteria  n/a    normal  0.0540632 
 
 
-
 
NC_010524  Lcho_1083  two component LuxR family transcriptional regulator  37.5 
 
 
316 aa  73.6  0.000000000004  Leptothrix cholodnii SP-6  Bacteria  n/a    normal 
 
 
-
 
NC_011146  Gbem_2281  response regulator receiver protein  40.91 
 
 
280 aa  73.6  0.000000000004  Geobacter bemidjiensis Bem  Bacteria  normal  0.217898  n/a   
 
 
-
 
NC_009338  Mflv_2266  two component transcriptional regulator  38.6 
 
 
249 aa  73.6  0.000000000004  Mycobacterium gilvum PYR-GCK  Bacteria  decreased coverage  0.00896474  normal 
 
 
-
 
NC_008576  Mmc1_1215  periplasmic sensor hybrid histidine kinase  36.3 
 
 
944 aa  73.6  0.000000000004  Magnetococcus sp. MC-1  Bacteria  normal  0.960151  normal  0.101285 
 
 
-
 
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