More than 300 homologs were found in PanDaTox collection
for query gene Gbem_2281 on replicon NC_011146
Organism: Geobacter bemidjiensis Bem



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Replicon accession
Locus tag
Product
% identity
Alignment on query gene
Alignment on homolog gene
Length
Bit score

E-value
Organism name
Kingdom
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Coverage Plot
PanDaTox homologs
Experimental validation
NC_011146  Gbem_2281  response regulator receiver protein  100 
 
 		 280 aa  572  1.0000000000000001e-162  Geobacter bemidjiensis Bem  Bacteria  normal  0.217898  n/a   
 
 
-
 
NC_012918  GM21_1942  response regulator receiver protein  97.14 
 
 		 280 aa  560  1.0000000000000001e-159  Geobacter sp. M21  Bacteria  n/a    normal  1 
 
 
-
 
NC_009483  Gura_0978  response regulator receiver protein  58.57 
 
 		 280 aa  354  7.999999999999999e-97  Geobacter uraniireducens Rf4  Bacteria  hitchhiker  0.000299391  n/a   
 
 
-
 
NC_008609  Ppro_2813  response regulator receiver protein  49.26 
 
 		 274 aa  280  2e-74  Pelobacter propionicus DSM 2379  Bacteria  normal  1  n/a   
 
 
-
 
NC_012918  GM21_1797  response regulator receiver protein  45.65 
 
 		 292 aa  255  6e-67  Geobacter sp. M21  Bacteria  n/a    normal  0.0698667 
 
 
-
 
NC_011146  Gbem_2420  response regulator receiver protein  45.62 
 
 		 292 aa  251  8.000000000000001e-66  Geobacter bemidjiensis Bem  Bacteria  normal  1  n/a   
 
 
-
 
NC_010814  Glov_2262  response regulator receiver protein  42.96 
 
 		 281 aa  250  2e-65  Geobacter lovleyi SZ  Bacteria  normal  1  n/a   
 
 
-
 
NC_007517  Gmet_1737  response regulator receiver domain-containing protein  44 
 
 		 277 aa  241  7e-63  Geobacter metallireducens GS-15  Bacteria  normal  0.570794  normal  0.630295 
 
 
-
 
NC_002939  GSU1220  response regulator  39.27 
 
 		 277 aa  226  3e-58  Geobacter sulfurreducens PCA  Bacteria  normal  0.327631  n/a   
 
 
-
 
NC_009483  Gura_2299  response regulator receiver protein  43.91 
 
 		 275 aa  226  4e-58  Geobacter uraniireducens Rf4  Bacteria  normal  0.0218685  n/a   
 
 
-
 
NC_010814  Glov_0372  response regulator receiver protein  40.36 
 
 		 340 aa  224  2e-57  Geobacter lovleyi SZ  Bacteria  normal  0.463682  n/a   
 
 
-
 
NC_012918  GM21_1135  response regulator receiver protein  34.21 
 
 		 283 aa  177  1e-43  Geobacter sp. M21  Bacteria  n/a    normal  1 
 
 
-
 
NC_011146  Gbem_3127  response regulator receiver protein  34.21 
 
 		 283 aa  177  2e-43  Geobacter bemidjiensis Bem  Bacteria  normal  1  n/a   
 
 
-
 
NC_014248  Aazo_1477  response regulator receiver modulated diguanylate cyclase  36.44 
 
 		 317 aa  93.2  4e-18  'Nostoc azollae' 0708  Bacteria  normal  1  n/a   
 
 
-
 
NC_007796  Mhun_0493  response regulator receiver sensor signal transduction histidine kinase  37.3 
 
 		 440 aa  92  9e-18  Methanospirillum hungatei JF-1  Archaea  normal  0.274957  normal  1 
 
 
-
 
NC_011729  PCC7424_5086  response regulator receiver modulated diguanylate cyclase  34.43 
 
 		 465 aa  88.2  2e-16  Cyanothece sp. PCC 7424  Bacteria  n/a    normal  1 
 
 
-
 
NC_013132  Cpin_2687  response regulator receiver sensor signal transduction histidine kinase  36.67 
 
 		 1013 aa  87  3e-16  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.70216  normal  1 
 
 
-
 
NC_013440  Hoch_3814  response regulator receiver modulated diguanylate cyclase with PAS/PAC sensor  34.06 
 
 		 1131 aa  86.7  4e-16  Haliangium ochraceum DSM 14365  Bacteria  normal  1  normal  0.257486 
 
 
-
 
NC_010333  Caul_5315  response regulator receiver protein  36.36 
 
 		 144 aa  86.3  5e-16  Caulobacter sp. K31  Bacteria  normal  0.813269  normal  0.296683 
 
 
-
 
NC_011831  Cagg_2051  two component transcriptional regulator, winged helix family  38.89 
 
 		 247 aa  85.9  6e-16  Chloroflexus aggregans DSM 9485  Bacteria  normal  0.520505  normal  1 
 
 
-
 
NC_007952  Bxe_B0221  GAF sensor hybrid histidine kinase  37.29 
 
 		 1651 aa  85.9  6e-16  Burkholderia xenovorans LB400  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010524  Lcho_3970  response regulator receiver protein  35.04 
 
 		 121 aa  86.3  6e-16  Leptothrix cholodnii SP-6  Bacteria  n/a    normal  0.0244969 
 
 
-
 
NC_003909  BCE_2749  transcription response regulator-like protein  41.18 
 
 		 221 aa  85.9  8e-16  Bacillus cereus ATCC 10987  Bacteria  decreased coverage  0.00061025  n/a   
 
 
-
 
NC_011729  PCC7424_0500  response regulator receiver sensor signal transduction histidine kinase  38.06 
 
 		 373 aa  85.5  8e-16  Cyanothece sp. PCC 7424  Bacteria  n/a    normal  1 
 
 
-
 
NC_008554  Sfum_2303  response regulator receiver protein  34.45 
 
 		 227 aa  85.5  9e-16  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009457  VC0395_A0150  sensory box sensor histidine kinase/response regulator  34.82 
 
 		 1177 aa  85.5  0.000000000000001  Vibrio cholerae O395  Bacteria  normal  1  n/a   
 
 
-
 
NC_011772  BCG9842_B2563  transcriptional regulatory protein ResD  39.5 
 
 		 221 aa  84.7  0.000000000000001  Bacillus cereus G9842  Bacteria  normal  1  hitchhiker  0.00803163 
 
 
-
 
NC_007413  Ava_1086  multi-sensor hybrid histidine kinase  36.13 
 
 		 1431 aa  85.1  0.000000000000001  Anabaena variabilis ATCC 29413  Bacteria  normal  1  normal  1 
 
 
-
 
NC_011145  AnaeK_2310  two component, sigma54 specific, transcriptional regulator, Fis family  40.83 
 
 		 469 aa  85.1  0.000000000000001  Anaeromyxobacter sp. K  Bacteria  normal  0.294968  n/a   
 
 
-
 
NC_011312  VSAL_I2575  chitin degradation sensor protein  35 
 
 		 1127 aa  85.1  0.000000000000001  Aliivibrio salmonicida LFI1238  Bacteria  normal  1  n/a   
 
 
-
 
NC_007760  Adeh_1555  two component, sigma54 specific, Fis family transcriptional regulator  40.83 
 
 		 467 aa  84.7  0.000000000000001  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  0.21045  n/a   
 
 
-
 
NC_011891  A2cp1_2398  two component, sigma54 specific, transcriptional regulator, Fis family  40.83 
 
 		 469 aa  85.1  0.000000000000001  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  0.313034  n/a   
 
 
-
 
NC_008740  Maqu_3676  response regulator receiver modulated metal dependent phosphohydrolase  37.3 
 
 		 328 aa  84.7  0.000000000000001  Marinobacter aquaeolei VT8  Bacteria  normal  1  n/a   
 
 
-
 
NC_013385  Adeg_1011  two component transcriptional regulator, winged helix family  36.67 
 
 		 231 aa  84.3  0.000000000000002  Ammonifex degensii KC4  Bacteria  normal  1  n/a   
 
 
-
 
NC_007493  RSP_2437  chemotaxis response regulator, CheY1  35.65 
 
 		 122 aa  84.3  0.000000000000002  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  0.365798  n/a   
 
 
-
 
NC_009049  Rsph17029_1101  response regulator receiver protein  35.65 
 
 		 122 aa  84.3  0.000000000000002  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  0.956043  normal  1 
 
 
-
 
NC_010184  BcerKBAB4_2424  two component transcriptional regulator  39.5 
 
 		 221 aa  84.7  0.000000000000002  Bacillus weihenstephanensis KBAB4  Bacteria  normal  0.0245011  n/a   
 
 
-
 
NC_009675  Anae109_2258  two component, sigma54 specific, Fis family transcriptional regulator  38.66 
 
 		 468 aa  84  0.000000000000003  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  0.428008  normal  0.0222917 
 
 
-
 
NC_011898  Ccel_1892  two component transcriptional regulator, winged helix family  34.65 
 
 		 228 aa  84  0.000000000000003  Clostridium cellulolyticum H10  Bacteria  hitchhiker  0.0000392  n/a   
 
 
-
 
NC_007796  Mhun_0986  response regulator receiver sensor signal transduction histidine kinase  34.62 
 
 		 433 aa  84  0.000000000000003  Methanospirillum hungatei JF-1  Archaea  normal  0.0645349  normal  0.624976 
 
 
-
 
NC_013730  Slin_5611  two component transcriptional regulator, winged helix family  39.47 
 
 		 235 aa  83.6  0.000000000000003  Spirosoma linguale DSM 74  Bacteria  normal  1  normal  0.736991 
 
 
-
 
NC_011662  Tmz1t_3692  CheA signal transduction histidine kinase  37.29 
 
 		 1907 aa  84  0.000000000000003  Thauera sp. MZ1T  Bacteria  normal  1  n/a   
 
 
-
 
NC_011729  PCC7424_0178  response regulator receiver modulated diguanylate cyclase  34.43 
 
 		 322 aa  83.6  0.000000000000003  Cyanothece sp. PCC 7424  Bacteria  n/a    normal  0.895619 
 
 
-
 
NC_008345  Sfri_3384  response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)  36.64 
 
 		 829 aa  83.6  0.000000000000003  Shewanella frigidimarina NCIMB 400  Bacteria  normal  1  n/a   
 
 
-
 
NC_010581  Bind_3546  two component transcriptional regulator  35.94 
 
 		 273 aa  83.6  0.000000000000003  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  0.376665  normal  0.686762 
 
 
-
 
NC_009943  Dole_2739  two component, sigma54 specific, Fis family transcriptional regulator  37.19 
 
 		 451 aa  83.2  0.000000000000004  Desulfococcus oleovorans Hxd3  Bacteria  normal  0.693002  n/a   
 
 
-
 
NC_007796  Mhun_2749  response regulator receiver domain-containing protein  32.48 
 
 		 436 aa  83.2  0.000000000000004  Methanospirillum hungatei JF-1  Archaea  normal  1  normal  1 
 
 
-
 
NC_010622  Bphy_0135  multi-sensor hybrid histidine kinase  36.29 
 
 		 1631 aa  83.2  0.000000000000004  Burkholderia phymatum STM815  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008312  Tery_3494  response regulator receiver protein  29.77 
 
 		 180 aa  83.2  0.000000000000004  Trichodesmium erythraeum IMS101  Bacteria  normal  0.342019  normal  1 
 
 
-
 
NC_010506  Swoo_2294  two component transcriptional regulator  40.17 
 
 		 226 aa  83.2  0.000000000000004  Shewanella woodyi ATCC 51908  Bacteria  hitchhiker  0.000876575  normal  0.575243 
 
 
-
 
NC_011898  Ccel_0916  two component transcriptional regulator, winged helix family  37.29 
 
 		 231 aa  82.8  0.000000000000005  Clostridium cellulolyticum H10  Bacteria  normal  0.0574949  n/a   
 
 
-
 
NC_013440  Hoch_4952  response regulator receiver protein  35.9 
 
 		 317 aa  82.8  0.000000000000005  Haliangium ochraceum DSM 14365  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010655  Amuc_1110  two component transcriptional regulator, winged helix family  35.59 
 
 		 234 aa  82.8  0.000000000000005  Akkermansia muciniphila ATCC BAA-835  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009523  RoseRS_2694  putative PAS/PAC sensor protein  38.81 
 
 		 969 aa  82.8  0.000000000000005  Roseiflexus sp. RS-1  Bacteria  normal  0.0176534  normal  1 
 
 
-
 
NC_010180  BcerKBAB4_5471  two component transcriptional regulator  38.66 
 
 		 221 aa  82.4  0.000000000000008  Bacillus weihenstephanensis KBAB4  Bacteria  hitchhiker  0.00800002  hitchhiker  0.0013378 
 
 
-
 
NC_007517  Gmet_0776  two component, sigma54 specific, Fis family transcriptional regulator  38.98 
 
 		 454 aa  82.4  0.000000000000008  Geobacter metallireducens GS-15  Bacteria  normal  1  normal  1 
 
 
-
 
NC_013385  Adeg_0644  two component transcriptional regulator, winged helix family  36 
 
 		 236 aa  82  0.000000000000009  Ammonifex degensii KC4  Bacteria  normal  1  n/a   
 
 
-
 
NC_002939  GSU0811  nitrogen regulation protein NtrX  36.44 
 
 		 456 aa  81.3  0.00000000000001  Geobacter sulfurreducens PCA  Bacteria  normal  0.686874  n/a   
 
 
-
 
NC_009767  Rcas_4344  two component transcriptional regulator  39.5 
 
 		 239 aa  82  0.00000000000001  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.325933  normal  0.345767 
 
 
-
 
NC_013456  VEA_002587  chitin catabolic cascade sensor histidine kinase ChiS  34.71 
 
 		 1111 aa  81.6  0.00000000000001  Vibrio sp. Ex25  Bacteria  normal  1  n/a   
 
 
-
 
NC_007912  Sde_0290  response regulator receiver domain-containing protein  37.82 
 
 		 236 aa  82  0.00000000000001  Saccharophagus degradans 2-40  Bacteria  normal  0.870097  hitchhiker  0.0000582863 
 
 
-
 
NC_011729  PCC7424_5208  response regulator receiver protein  32.79 
 
 		 184 aa  82  0.00000000000001  Cyanothece sp. PCC 7424  Bacteria  n/a    hitchhiker  0.0000000457636 
 
 
-
 
NC_004116  SAG0123  DNA-binding response regulator  36.75 
 
 		 223 aa  80.9  0.00000000000002  Streptococcus agalactiae 2603V/R  Bacteria  normal  1  n/a   
 
 
-
 
NC_009783  VIBHAR_03422  hypothetical protein  34.71 
 
 		 1128 aa  80.9  0.00000000000002  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_009012  Cthe_1805  response regulator receiver modulated diguanylate cyclase  34.19 
 
 		 310 aa  80.9  0.00000000000002  Clostridium thermocellum ATCC 27405  Bacteria  normal  0.0638722  n/a   
 
 
-
 
NC_009674  Bcer98_0802  two component transcriptional regulator  37.82 
 
 		 220 aa  80.9  0.00000000000002  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  1  n/a   
 
 
-
 
NC_011662  Tmz1t_3851  response regulator receiver modulated diguanylate cyclase  40.62 
 
 		 634 aa  80.9  0.00000000000002  Thauera sp. MZ1T  Bacteria  normal  0.0571122  n/a   
 
 
-
 
NC_009767  Rcas_3177  adenylate/guanylate cyclase with GAF and PAS/PAC sensors  39.55 
 
 		 971 aa  80.9  0.00000000000002  Roseiflexus castenholzii DSM 13941  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009523  RoseRS_0195  two component transcriptional regulator  38.66 
 
 		 243 aa  81.3  0.00000000000002  Roseiflexus sp. RS-1  Bacteria  normal  1  hitchhiker  0.00716616 
 
 
-
 
NC_013757  Gobs_4814  histidine kinase  36.59 
 
 		 919 aa  81.3  0.00000000000002  Geodermatophilus obscurus DSM 43160  Bacteria  decreased coverage  0.00150972  n/a   
 
 
-
 
NC_011831  Cagg_0599  response regulator receiver modulated diguanylate cyclase  33.05 
 
 		 313 aa  81.3  0.00000000000002  Chloroflexus aggregans DSM 9485  Bacteria  normal  0.464892  normal  0.548622 
 
 
-
 
NC_014248  Aazo_0176  response regulator receiver modulated serine phosphatase  35 
 
 		 378 aa  81.3  0.00000000000002  'Nostoc azollae' 0708  Bacteria  normal  1  n/a   
 
 
-
 
NC_009428  Rsph17025_1793  response regulator receiver protein  33.04 
 
 		 122 aa  80.9  0.00000000000002  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007948  Bpro_3898  multi-sensor signal transduction histidine kinase  34.85 
 
 		 1003 aa  81.3  0.00000000000002  Polaromonas sp. JS666  Bacteria  normal  0.504038  normal  0.0804481 
 
 
-
 
NC_013522  Taci_0843  response regulator receiver protein  38.02 
 
 		 251 aa  80.9  0.00000000000002  Thermanaerovibrio acidaminovorans DSM 6589  Bacteria  hitchhiker  0.00000594696  n/a   
 
 
-
 
NC_011831  Cagg_0393  two component transcriptional regulator, winged helix family  36.75 
 
 		 227 aa  80.9  0.00000000000002  Chloroflexus aggregans DSM 9485  Bacteria  normal  1  normal  0.202895 
 
 
-
 
NC_011729  PCC7424_2841  response regulator receiver modulated GAF sensor protein  35.9 
 
 		 308 aa  80.9  0.00000000000002  Cyanothece sp. PCC 7424  Bacteria  n/a    normal  0.585847 
 
 
-
 
NC_010524  Lcho_0045  adenylate/guanylate cyclase  37.19 
 
 		 382 aa  80.9  0.00000000000002  Leptothrix cholodnii SP-6  Bacteria  n/a    normal  1 
 
 
-
 
NC_011884  Cyan7425_1392  response regulator receiver modulated diguanylate cyclase/phosphodiesterase  31.45 
 
 		 584 aa  80.9  0.00000000000002  Cyanothece sp. PCC 7425  Bacteria  normal  0.623748  normal  1 
 
 
-
 
NC_009972  Haur_2343  two component transcriptional regulator  36.51 
 
 		 243 aa  80.1  0.00000000000003  Herpetosiphon aurantiacus ATCC 23779  Bacteria  hitchhiker  0.00929975  n/a   
 
 
-
 
NC_012918  GM21_2194  response regulator receiver sensor signal transduction histidine kinase  30.25 
 
 		 452 aa  80.1  0.00000000000003  Geobacter sp. M21  Bacteria  n/a    normal  0.514859 
 
 
-
 
NC_013522  Taci_0090  two component transcriptional regulator, winged helix family  35.04 
 
 		 228 aa  80.1  0.00000000000003  Thermanaerovibrio acidaminovorans DSM 6589  Bacteria  normal  1  n/a   
 
 
-
 
NC_008825  Mpe_A3186  twitching motility protein  36.84 
 
 		 2092 aa  80.1  0.00000000000003  Methylibium petroleiphilum PM1  Bacteria  normal  0.0988113  normal  0.323736 
 
 
-
 
NC_007796  Mhun_2690  response regulator receiver domain-containing protein  33.04 
 
 		 124 aa  80.5  0.00000000000003  Methanospirillum hungatei JF-1  Archaea  normal  1  normal  0.0818688 
 
 
-
 
NC_010814  Glov_1166  two component, sigma54 specific, transcriptional regulator, Fis family  37.61 
 
 		 447 aa  80.5  0.00000000000003  Geobacter lovleyi SZ  Bacteria  normal  1  n/a   
 
 
-
 
NC_009921  Franean1_4386  histidine kinase  36.21 
 
 		 411 aa  80.5  0.00000000000003  Frankia sp. EAN1pec  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007974  Rmet_5323  transcriptional regulator two component heavy metal regulatory response ZniR  32.81 
 
 		 206 aa  80.5  0.00000000000003  Cupriavidus metallidurans CH34  Bacteria  normal  1  normal  0.844748 
 
 
-
 
NC_011831  Cagg_2709  two component transcriptional regulator, winged helix family  34.75 
 
 		 236 aa  80.5  0.00000000000003  Chloroflexus aggregans DSM 9485  Bacteria  decreased coverage  0.0011921  normal  1 
 
 
-
 
NC_010511  M446_2805  integral membrane sensor hybrid histidine kinase  35.09 
 
 		 927 aa  80.1  0.00000000000003  Methylobacterium sp. 4-46  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008700  Sama_0437  response regulator receiver protein  33.33 
 
 		 237 aa  80.5  0.00000000000003  Shewanella amazonensis SB2B  Bacteria  normal  0.576272  normal  1 
 
 
-
 
NC_013132  Cpin_0693  two component transcriptional regulator, winged helix family  34.19 
 
 		 229 aa  80.1  0.00000000000003  Chitinophaga pinensis DSM 2588  Bacteria  normal  1  normal  1 
 
 
-
 
NC_012034  Athe_0580  response regulator receiver protein  37.19 
 
 		 123 aa  80.1  0.00000000000003  Anaerocellum thermophilum DSM 6725  Bacteria  normal  1  n/a   
 
 
-
 
NC_010551  BamMC406_1236  response regulator receiver sensor signal transduction histidine kinase  37.01 
 
 		 386 aa  80.5  0.00000000000003  Burkholderia ambifaria MC40-6  Bacteria  normal  0.493129  normal  1 
 
 
-
 
NC_013205  Aaci_2922  two component transcriptional regulator, winged helix family  39.17 
 
 		 230 aa  80.5  0.00000000000003  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  normal  0.221617  n/a   
 
 
-
 
NC_002947  PP_4991  response regulator receiver protein  36.21 
 
 		 121 aa  80.1  0.00000000000004  Pseudomonas putida KT2440  Bacteria  normal  0.353726  normal  1 
 
 
-
 
NC_009512  Pput_4865  response regulator receiver protein  36.21 
 
 		 121 aa  80.1  0.00000000000004  Pseudomonas putida F1  Bacteria  normal  0.321258  normal  0.0275279 
 
 
-
 
NC_007947  Mfla_0911  two component, sigma54 specific, Fis family transcriptional regulator  36.97 
 
 		 456 aa  80.1  0.00000000000004  Methylobacillus flagellatus KT  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007947  Mfla_1055  two component, sigma54 specific, Fis family transcriptional regulator  36.97 
 
 		 456 aa  80.1  0.00000000000004  Methylobacillus flagellatus KT  Bacteria  normal  0.523432  normal  1 
 
 
-
 
NC_011146  Gbem_2025  response regulator receiver sensor signal transduction histidine kinase  29.51 
 
 		 452 aa  80.1  0.00000000000004  Geobacter bemidjiensis Bem  Bacteria  normal  1  n/a   
 
 
-
 
NC_009952  Dshi_1406  response regulator receiver protein  36.21 
 
 		 121 aa  80.1  0.00000000000004  Dinoroseobacter shibae DFL 12  Bacteria  normal  0.0894387  normal  1 
 
 
-
 
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