Gene Avi_9103 details

Gene Information

• Locus tag: Avi_9103
• ID: 7367820
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Agrobacterium vitis S4
• Kingdom: Bacteria
• Replicon accession: NC_011984
• Strand: -
• Start bp: 70492
• End bp: 73929
• Gene Length: 3438 bp
• Protein Length: 1145 aa
• Translation table: 11
• GC content: 57%
• IMG OID: 643644309
• Product: multi-sensor hybrid histidine kinase
• Protein accession: YP_002542606
• Protein GI: 222083203
• COG category: [T] Signal transduction mechanisms
• COG ID: [COG0642] Signal transduction histidine kinase

Plasmid Coverage information

• Num covering plasmid clones: 3
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCATAGGA AAAGTGCTGC TGTGACCAAG ATAGGTGGTC TTGGGCTGGA TAAGTCTTTG 
GCCTTCGGTC TATCCACTGC CTTGGCGTTC TTCGTCATCA GTGCCGCCGT TGCGGTTTAC 
ACTACGCAAA CGTTGAGGAC GAGCAACGAA AGCGTAGTCA AGACCCATCA GGTCATTGTC 
TCGATCGACC TTCTCCTGTC TGATGTCCAG GATGCCGAGA CAGGTCAGCG TGGGTATTTG 
CTGACCGGCA AAGAGCAGTA CCTGCAGCCG TATCAGCGGG CCGTTGCGCA GATACAGGCG 
CGGCTTGCGC GGGTCGAGAG CTTGATCACA ACGGACACCG CGCAAAGCTA TCGGTTAGAA 
GATCTCCGTA ACTCCGTTTC CTCAAAGTTA GCCGAGCTCG ACGAAACGCT TCGAACCTAC 
CGAACCGCCG GCCCTGCTGC GGCCCTCGCG CTCGTTAATA CGGACCGCGG TAAGTTCGAC 
ATGGACGCGA TCCGCACACT CGTGTCAGAA ATCCGCAATG CAGAAACCGA CGTGCGTACC 
CAGCGTGTCG CGGAGATGAA CAGGGCCTAC GTCGTTGCAT TCGCCACGAG CCTGTTGACG 
GGCTTTCTTG GCATCGTCCT GACGCTGGTC ATCGGTGGCC TGATGCGCCG TGCCACCTTG 
GCACGCAAGA ACGAGCAGTG GCAGCAGGAA GCGCAGGTCG GTCTTGGACC GGTTGTAATC 
GGGGAACAGT CTACGCAAGA GCTTGGACAG AACATATTGC GCTTTCTCAC AAGCTACCTG 
GGTGCCGTTG CAGGCTCGCT CTATGTGAGG GATGGAGCGC GATACGCTCT TACAGCCGTT 
CATGGTGTTC CTGCAGGTAC AGTTATTCCA GAGCGATTCG AAGAAAGCGA TAGTCTGTTC 
GGTCATGTTC TTCGAGATCA CCGTCCTGTC ACGGTAGGTG AGCTTCCTGA CGGCTATATC 
AGTTTTGGCT CCAGCCTCGG CCAACAGAAG CCCCGCTACC TGACGCTGGC GCCGGCGATG 
GTGGACGGCG AGGTCAAGGC GGTATTCGAA CTGGGCTTTC TTCACCCGGT CGGCGATCAC 
GTTCTCGCCC TCCTCGAGCG GTCGTCCAAC ACGATCGCGG CAGCCATTCG CTCAGCCGAA 
TTCCGTACAC AGCTACGAAC ACTGCTCCAC GAGACGCAGC GGCAGACGGA AGAGCTTCAG 
GTCCAGGGCG AAGAACTGCG AGTATCCAAC GAGGAACTGG AAGAGCAGAG TAGGGCGCTG 
AAGGAATCTC AGGCCCGTCT GGAACAGCAG CAGGTGGAAC TGGAGCAGAC GAATTCCCAG 
CTCGAGGAGC AGGCGCAGGA GCTTGAGCGA CAGAAGGACG ACCTTGAAAA AGCGAACGAC 
GCCGTCAGAT TGCAGGCACA AGAAGTGGAG CGTGCCAGCC GCTACAAATC AGATTTTCTG 
GCCAACATGT CACACGAACT GCGTACCCCG CTGAACTCTT CGCTGATCCT TGCCAAGCTC 
TTGGCGGACA ACGCCGACGA GAATTTGACG GCGGAACAGG TCAAGTTCGC ACAGACGATA 
CAGTCTTCGG GGAACGATCT GCTGAACCTC ATCAACGATA TCCTTGATCT TTCGAAGATC 
GAGGCCGGCC ATGTGGAGGT CAGTCCGGAG CCAGTTGCCA TCAACCGGAC TGTCGATGGA 
CTTCGGCAGT TGTTCGATCC GCTCGCTGCC CAAAAGGGAC TGAACCTCTC GATCGAAGTC 
GCCCCGGACG TCCCATCGGT CATCGAGACG GATCCACAAC GCCTCGAGCA GGTCCTCAAG 
AACCTTCTGG CAAATGCCGT CAAGTTCACC GCAGAGGGGC AGGTATCGCT CCTTGTCCGC 
CCTGCCGGTG ATGCGCAGAT TGCGATCTCC GTGGTCGATA CCGGAATTGG AATTGCCGAG 
GACCAGCAGC GCAACATCTT CGAGGCCTTC CATCAGGCAG ACAGCACGAT CAGTCGAAAG 
TTCGGCGGAA CGGGCCTCGG GCTTTCGATC TCGCGAGAAC TGGTCCGTCT GCTCGGCGGC 
AGGATGCATC TGCAAAGCCG TCCAGGTACG GGAAGTACGT TCACCGTGAT CATCCCGAAG 
ATCTTTTCGG CTAGTGCCGT TCGCGCGCCC GAACCTGCTA TCATTACGGG CACCACAGCA 
CCTGCCCTCA CCAGTAATCC CATTGCAACA GAACGTTCGC CGCGTTCGCA TGGCATCGTC 
GACGACGATC GTCATCTGAG CGGTAGCCCC ACCCGTAAAC TTCTCGTTGT GGAGGACGAC 
CAGTCCTTCG CGATGATTCT GCGTGATCTG GCGCGAGAGC TGAGCTTTCA GGTGCTGGTC 
GCCGGGACGG CACAAGAAGC ACTTGAACTT GCCCGCCAAC ACGCGCCAAG CGCGATCGTT 
TTGGACGTTG GTCTACCGGA CCAGTCTGGG CTCTCGGTCC TTGATCGCCT TAAGCGTGAC 
GTTCGGACGC GCCATATTCC AATTCACATC ATATCTGCGG AAGATTATTC CGAACGCGCT 
CTGTCACTAG GCGCCATCGG TTATGCGATG AAGCCGGTCC AACGCGATGA GCTTCTTGAC 
GTCCTGAAAT CGCTGGAGGC AAAAATATCG CAGAACGTGC GCCGCGTTTT GATTGTTGAG 
GACAACCAGA TCCAGCGCGA GGCAGTCTCT AAGCTCATTG GATCGCAAGA TGTGGAGACC 
GTCGGAGCTG GCACTGCGGC GGAATGCCTG GCGCTTTTGA AGGAACAGAC TTTCGATTGC 
ATGGTGCTCG ATCTCTCGCT GCCGGACGCC TCGGGATTTG CGCTTCTCGA AACGATCAGT 
CAGGACACTG CCCATTCTTT CCCTCCTGTG ATCGTCTACA CGGGGCGGGT CCTTTCGGCA 
GAGGAAGAGC AGAGCCTACG GCGCTTTTCC AAATCGATCA TTATCAAGGG AGCCAAATCA 
CCGGAGCGCC TTTTGGACGA GGTGACGCTT TTCCTCCACC AAGTCGTGTC CGAACTTCCC 
GACGAACAGC AGAAGATGAT CCGAAAGGCC AGGAATCGCG ACGCCTTGCT TGAGGGACGC 
CGGATCCTGA TCGTTGAGGA CGACGTGCGC AATATCTACG CGCTGACGAA CATTCTTGAG 
CCGCGTGGTG CCGTTATCGA AATCGCCCGT AACGGTGAGG AAGCTTTGCA GAAGCTGGAC 
CGGTCGCTTT CCAGCACCGA TGGCCGGATC GATCTGGTTT TGATGGATGT GATGATGCCG 
GTGATGGACG GGCTGACCGC CACCCGCCAC ATCCGCAACA ATCCGAACTG GAAGAAGCTA 
CCGGTGATCA CGCTGACGGC GAAAGCTATG CCCGACGACC AAAAGCGGTG TATCGAGGCC 
GGCGCCAACG ACTATATGGC CAAGCCGCTA GACGTCGAGA AACTCCTGTC GCTTGTCCGT 
GTCTGGATGC CTCAATGA 

 

Protein sequence

MHRKSAAVTK IGGLGLDKSL AFGLSTALAF FVISAAVAVY TTQTLRTSNE SVVKTHQVIV 
SIDLLLSDVQ DAETGQRGYL LTGKEQYLQP YQRAVAQIQA RLARVESLIT TDTAQSYRLE 
DLRNSVSSKL AELDETLRTY RTAGPAAALA LVNTDRGKFD MDAIRTLVSE IRNAETDVRT 
QRVAEMNRAY VVAFATSLLT GFLGIVLTLV IGGLMRRATL ARKNEQWQQE AQVGLGPVVI 
GEQSTQELGQ NILRFLTSYL GAVAGSLYVR DGARYALTAV HGVPAGTVIP ERFEESDSLF 
GHVLRDHRPV TVGELPDGYI SFGSSLGQQK PRYLTLAPAM VDGEVKAVFE LGFLHPVGDH 
VLALLERSSN TIAAAIRSAE FRTQLRTLLH ETQRQTEELQ VQGEELRVSN EELEEQSRAL 
KESQARLEQQ QVELEQTNSQ LEEQAQELER QKDDLEKAND AVRLQAQEVE RASRYKSDFL 
ANMSHELRTP LNSSLILAKL LADNADENLT AEQVKFAQTI QSSGNDLLNL INDILDLSKI 
EAGHVEVSPE PVAINRTVDG LRQLFDPLAA QKGLNLSIEV APDVPSVIET DPQRLEQVLK 
NLLANAVKFT AEGQVSLLVR PAGDAQIAIS VVDTGIGIAE DQQRNIFEAF HQADSTISRK 
FGGTGLGLSI SRELVRLLGG RMHLQSRPGT GSTFTVIIPK IFSASAVRAP EPAIITGTTA 
PALTSNPIAT ERSPRSHGIV DDDRHLSGSP TRKLLVVEDD QSFAMILRDL ARELSFQVLV 
AGTAQEALEL ARQHAPSAIV LDVGLPDQSG LSVLDRLKRD VRTRHIPIHI ISAEDYSERA 
LSLGAIGYAM KPVQRDELLD VLKSLEAKIS QNVRRVLIVE DNQIQREAVS KLIGSQDVET 
VGAGTAAECL ALLKEQTFDC MVLDLSLPDA SGFALLETIS QDTAHSFPPV IVYTGRVLSA 
EEEQSLRRFS KSIIIKGAKS PERLLDEVTL FLHQVVSELP DEQQKMIRKA RNRDALLEGR 
RILIVEDDVR NIYALTNILE PRGAVIEIAR NGEEALQKLD RSLSSTDGRI DLVLMDVMMP 
VMDGLTATRH IRNNPNWKKL PVITLTAKAM PDDQKRCIEA GANDYMAKPL DVEKLLSLVR 
VWMPQ