| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_1961 |
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| Symbol | |
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| ID | 6116224 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella woodyi ATCC 51908 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010506 |
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| Strand | + |
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| Start bp | 2415460 |
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| End bp | 2420601 |
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| Gene Length | 5142 bp |
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| Protein Length | 1713 aa |
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| Translation table | 11 |
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| GC content | 42% |
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| IMG OID | 641633464 |
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| Product | multi-sensor hybrid histidine kinase |
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| Protein accession | YP_001760340 |
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| Protein GI | 170726314 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG0642] Signal transduction histidine kinase |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.280335 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.123564 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTTGACTG AGTTTAAATT CAGAACTCAA CTGTTATTGA GTTATGCAAC CATCTTATCA
TTCATGCTTG TGATCGCCTT AGTGGTCTTT TTTAGTGTCA AATCACTAGA GGATGATTTG
ATCTGGGTGG AGCATACTCA TGCCGTTTTA GACAAAGCCT CCAAAATAGA AGCCTCAGCC
ATCAATATGG AAACGGGAAT GAGAGGTTAT CTTTTGGCTG GGCAAGATGA TTTTTTAGCC
CCATATGAAG AGGGTAGAAA GGTTTTCAAT AAATTAATCT CCGAGCTTTC ATCCGATGTG
GATGATAACC CTGAGCAGGT GGCACTGTTA GGTGAAATAA AAAAGACAAT AGATGAATGG
CATACAGAGG TGACGACCCC GGTTATTGCT TTAAGGGCTG AAATAGGTAA TGCCAAGTCG
ATGAATGACA TGGCAGAGGT GATAAAACGA GCTGAAGGTA AGGCTCTTTT TGATGAATTT
AGGAAGAAAA TTGCTGAATT TATAAAACAT GAACAAGCGT TAGTTGTGCA GCGACATCGA
ACTCTTGAAC TTAGTAACAA TGCTAAAGAG CTTAAACGGC TTGAAAAGCT AGAGGTTCGC
TCTTATGAGG CGATCACAAT GGCACAAAAT ATTCTTGCAG CCGCTGTTGA TATGGAAACG
GGGATGCGTG GCTTTCTGCT GGCTGGTCAG GAGCGTTTTC TTGAACCCTA TAAACAAGGT
AATGAAGCGT TTCATCGATT AGTGGATGAG TTATCTCAGC TAGAAGCGGA TCATTCCAAT
CAACTTGCAT TATTGTCCGT AAGTCGAGAG CTCATAGACA CTTGGATAAG TGAGGTGGTT
GAGCCTCAAA TCAGTCTGCG CGAAGAGATA GGTGATGCTA AAACCATGGA TGACATGGCA
GATTTGGTTG GAGAGGCTAA GGGGAAAATC TATTTCGATA AGTTTCGTGA TCAGATAAAG
ACATTTAAAG ATAGAGAGCT AGTTCTACTG GATAAGCGTC AAGCATCTCT TGAAAGTACT
GAATCTCTGG TAGTGAATGT GACCCTCTTT GGTACTCTTT TAGCCATAAT TGTCGGTATT
GGGGTCGCAT TTAGGTTAAC TAGATACATA GTTAATCAAT TAGGTGGTGA ACCAGCTTAT
ATTGCTGAGA TTGCCCGAAA TGTCTCAAAT GGTGATTTGA GTATTGAACT GGAGCATGAG
GGCAAGCCTC AAGGAATATT TGCTGAGATG CAGCAGATGA TGCTGACCCT AAAAGCTAAA
ACTAGCTTAG CTCAGGGGAT CGCTGTTGGT GAATTAGATC AAGTTGTTAA GCTGGCATCA
GATAAAGACA CCTTAGGGAT AGCGTTAAAG GAGATGCTTA AAAACTTAAA TAATGTCGCA
GACCAAGCCG ATGCCATTGC CAAGGAGGAT TTTAGCAAAG AGGTGGTGTT TAAAAGTGAT
AAAGATCGAT TAGGTATCGC TCTGCATGAG ATGAAAAATC AGATCAAGGA GCGTAATGCT
TCGTTATCAT TGAGCTTAAA CCTTAATCGA GGGATTGTGG ATACCGCTGT TGATGGAATT
ATCTCAATAA AAGATGATGG CACCATACTC TCTGTTAACT CCGCCACAGA GGAGATGTTT
AAGTATTCTG CCGAGTCACT TATCGGACAA AATATTAAAT TCCTAATGCC TGAGCCCTAT
CATTCGGAGC ACAGCACATA TCTTAGTCAG TATAAAGCAA CCGGAAACAA GAAGATTATA
GGTAAAGGTC GTGAGGTGAT GGCCCTTAGG AGTGACGGTA CTACTTATCC TATCTATCTC
TCAGTTGGGG AGGTTAAACA GGGGGAGGAG ACGCTGTATA CCGGTTTTAT TCGTGATATC
ACGCAGCAGA AGAAGTTTGA GCAGGACATT ATTAGAAGGG AAGCGCTCAA TCGTGGCATG
GTTGACACCT GTCTTGACGC CATTCTCTCT ATAACGACCG ATGGGGTCAT TATTGCCTGC
AATAACGCTG CAGAGCTACT GTTTCAATAT AAAAGTGAGG AGTTGATTGG CAAGAAGGTC
AATATCTTAA TGCCTAGCCC TTTCACCGAT GAGCATGATG AATATTTAAA GAATTATTTA
ACGACTGGTA TTAAGAAGAT CATGGGCAAA GGGCGAGAGG TTACTGGTTT AAAAAAAGAT
GGCACGACAT TCCCAATCTT TTTGACTATC GGTGAGGTTG AGCAGGAGGA GGGCACAATC
TTTACTGGTT TTGTTCGGGA TATCACTAAA GAGAAGCAGT ATGAGGCAGA TCTGCAAAGA
ACCAATGAAG ATTTAATGAA GCAAAACGAG TTAAAGAGTC AAGTCTCTAG GATTAATGAA
TTGACTCAAG GCGCTTCAGA TCTAATGGCG ATGGCTGATG AAATTATTTC TGCACTCTCA
CAGATGATGA AAGCGGGTCA CGGGGTTATC TATACCTATG ATCAAGAGGA TGATGGTTTA
AGCCTGTCTG GAAGTTACGC GTTTAAGAAA AGAAAAGCAG TACTTCCCTC TATCTCTATA
GGGGAAGGCT TGGTAGGTCA ATGCGCTAAA GAGAGAAAAG CCATACTCTT ATCTCAGGTT
CCAGCGGATT ATATCCAGAT AAATTCAGGG CTGGGGCAAA GCTCGCCTTT GAATGTGTTA
GTGGTTCCAG TGTTGTTTGA AGAGGCGTTG ATAGGGGTGA TTGAGCTGGC CTCTTTTGAA
GGCTTTACTG ATGAACAGGT TGAAGTCATC GAGCTGATAT CAAGTAATTT AGGCATAGTG
ATCAATAACC TCAGAAGCCA AGAGAGGACG CAGACTCTAT TACTGGAAAC CCAAAGACAG
TCAGAGGAGT TACAGGCGCA GCAAGAGGAG CTTAAAAGCT CAAATGAAAG CTTGCTGGAG
CAAACTCAGT TGTTGAAAAC CTCTGAAGAG GAGCTAAAAC AGCAGAGTGA AGAGCTAAAA
GTGTCAAATG AGGAGTTAGA AGAGAAACAG GTATTCCTTA AACGTCAGAA GAGTGAGATT
GAAGCGGCCA AAACAGATCT TACGATTAAG GCTGAGGAGT TAGCGTTGGC CAGTAAGTAT
AAATCTGAGT TTTTGGCCAA TATGAGTCAT GAATTAAGAA CCCCTCTAAA TAGCTTGCTT
CTATTAGCTA AGGGATTAGC AGATAACAAG AGTCAACACT TGGATGAAAC AGAGGTGGAG
GATGCCAAGA TTATCTTTGA TGGGGGCAAT AACCTTCTCT GCTTGATCAA TGACATCATG
GATCTTTCTA AAGTTGAAGC CGGTAAGTTG TCGATCCATA TTGAAGAGGT CAGTATTGCT
GTGCTGTGTC GTAATTTAAG GCAAGTATTT GACCCTATAG CTAAGGATAG AGAGCTTGTA
CTCAATATCG AGGTTGACGA TAAATTACCT AGCACTGTAC GCAGTGATGG TCATAGAGTT
GAGCAGATAT TACGAAACTT ACTCTCTAAT GCATTGAAGT TTACAGAAAC AGGCTCTGTA
ACACTTAAAA TTGGCTATGT TGCACCCAAT ACTCTTTTCT CCCACAGCAG TCTAGATGCA
GAAACTGCGC TCTCGTTTTC GGTTGTTGAT ACAGGTATTG GTATTCCAGA AAATAAGATC
CAAGCTATTT TCGAGGCTTT TCAGCAGCAG GATGGCTCAA CAAGCAGAAA GTATGGTGGC
ACTGGATTAG GCCTGACGAT AGCGAGAGAG TTGACTCGTC TGCTGGGAGG AGAGATCCAG
CTACAGAGTG TGCTTGATGA GGGAAGCACG TTTACTCTCT ATCTTCCCAA CGTTTATGAT
TCTGATGCCG TGGAGGAGAA GCTTGAGGCG GGGTCAATTG TTTCTGATGT TAAATTCAAG
CAAGAGGTAG TGGGAGCAAG TGATGTGGAA GAAAAATCCT CCAAGACAGA GGAACCCACA
GAGCTTGTAC TGCAACCTTA CTCGGAATTT ATTCCCGATG ACAGAGAGAG CCTGCAGGAG
GGCGAGCCGA TTATATTGAT CATTGATGAT GATCCTGTGT TTGCCAAAAT ATTGCGTGAT
CATGCCAGGG AGTGTGGCTA TCAGTCTTTG GTTGCTGGTG ATGGACGAAT GGGGATTTTT
CTAGCACAGG AGTATCAGCC AAACGGGATT ATTCTCGACA TAATGCTTCC TGATATAGAT
GGCCATCAGG TATTAGAGCA ACTGAAGTTT AGCCTCAAGA CTCGTCACAT ACCTGTAGAG
ATAATCTCGG CTCATAATGA AGATAAGAAT GCTGCATTAG TTCAGGGAGC CATTGGCTTG
CAAACAAAGC CTGTTAGTCA AGAAACCCTA TTAAGTGTAT TTGATGAGAT TAAGTCATTC
TCATCCTCGG AACTACGCCG ATTGCTGGTG ATTGAAGATG ACGCTGGAAA TCAGACCTCC
ATAGTTAGGC TTTTGGAGGG GAGTGATATC GATATTAAGT GCGTCGATAA AGGTACTGAG
GGGGTTGAGG AGATTTTGTC CGGGCAATAT GACTGCATTA TTTTGGATTT GGGTTTACCA
GATATTAGTG GTTTTGAGGT GTTAAAACAG ATTGAGAGCA GTAAGTTAGA GCGGATCCCA
CCAGTTATTA TCTACACAGG TAAAGAGATT ACGGATCAAG AGCAGCTTGA GCTGAACAAG
TTTTCATCGA CCATAGTGCT AAAAGGTGTG GGATCAGGTG AACGGCTGCT AGATGATATC
TCACTCTTTC TACACGACAT TGAGTCTAGA TTCGCAACTG ACAGTCAGAA AACAATTCAT
ATGCTCCACG ATGAAGACGC GATGTTCCAA GAACGTAAGG TTTTGATAGT CGATGATGAT
ATGAGAAATA CCTACGCGCT ATCTAAAAAG TTGATTGAGT ATGGTTTTGA AGTAGAGATG
GCCCATAACG GCAAAGAAGC CGTTGAGCAA CTGACAGAAG ATAAAAGTTT TGAGTTAGTG
CTGATGGATA CCATGATGCC TGAGATGGAT GGTTATCAAG CAACAAAACG TATTAGGGAG
ATGGAGCATT ATAAACAAGT TCCCATTATT GCATTAACAG CAAAGACGAT GCCTGAAGAT
AGGGAAAAGT CATTACAGTC AGGAGCTTCC GAATACTTAA CTAAACCAAT TGATTTTGAA
AAACTGCTAT CTATTATGCG AATTTGGCTG TTTAAGCATT AA
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| Protein sequence | MLTEFKFRTQ LLLSYATILS FMLVIALVVF FSVKSLEDDL IWVEHTHAVL DKASKIEASA
INMETGMRGY LLAGQDDFLA PYEEGRKVFN KLISELSSDV DDNPEQVALL GEIKKTIDEW
HTEVTTPVIA LRAEIGNAKS MNDMAEVIKR AEGKALFDEF RKKIAEFIKH EQALVVQRHR
TLELSNNAKE LKRLEKLEVR SYEAITMAQN ILAAAVDMET GMRGFLLAGQ ERFLEPYKQG
NEAFHRLVDE LSQLEADHSN QLALLSVSRE LIDTWISEVV EPQISLREEI GDAKTMDDMA
DLVGEAKGKI YFDKFRDQIK TFKDRELVLL DKRQASLEST ESLVVNVTLF GTLLAIIVGI
GVAFRLTRYI VNQLGGEPAY IAEIARNVSN GDLSIELEHE GKPQGIFAEM QQMMLTLKAK
TSLAQGIAVG ELDQVVKLAS DKDTLGIALK EMLKNLNNVA DQADAIAKED FSKEVVFKSD
KDRLGIALHE MKNQIKERNA SLSLSLNLNR GIVDTAVDGI ISIKDDGTIL SVNSATEEMF
KYSAESLIGQ NIKFLMPEPY HSEHSTYLSQ YKATGNKKII GKGREVMALR SDGTTYPIYL
SVGEVKQGEE TLYTGFIRDI TQQKKFEQDI IRREALNRGM VDTCLDAILS ITTDGVIIAC
NNAAELLFQY KSEELIGKKV NILMPSPFTD EHDEYLKNYL TTGIKKIMGK GREVTGLKKD
GTTFPIFLTI GEVEQEEGTI FTGFVRDITK EKQYEADLQR TNEDLMKQNE LKSQVSRINE
LTQGASDLMA MADEIISALS QMMKAGHGVI YTYDQEDDGL SLSGSYAFKK RKAVLPSISI
GEGLVGQCAK ERKAILLSQV PADYIQINSG LGQSSPLNVL VVPVLFEEAL IGVIELASFE
GFTDEQVEVI ELISSNLGIV INNLRSQERT QTLLLETQRQ SEELQAQQEE LKSSNESLLE
QTQLLKTSEE ELKQQSEELK VSNEELEEKQ VFLKRQKSEI EAAKTDLTIK AEELALASKY
KSEFLANMSH ELRTPLNSLL LLAKGLADNK SQHLDETEVE DAKIIFDGGN NLLCLINDIM
DLSKVEAGKL SIHIEEVSIA VLCRNLRQVF DPIAKDRELV LNIEVDDKLP STVRSDGHRV
EQILRNLLSN ALKFTETGSV TLKIGYVAPN TLFSHSSLDA ETALSFSVVD TGIGIPENKI
QAIFEAFQQQ DGSTSRKYGG TGLGLTIARE LTRLLGGEIQ LQSVLDEGST FTLYLPNVYD
SDAVEEKLEA GSIVSDVKFK QEVVGASDVE EKSSKTEEPT ELVLQPYSEF IPDDRESLQE
GEPIILIIDD DPVFAKILRD HARECGYQSL VAGDGRMGIF LAQEYQPNGI ILDIMLPDID
GHQVLEQLKF SLKTRHIPVE IISAHNEDKN AALVQGAIGL QTKPVSQETL LSVFDEIKSF
SSSELRRLLV IEDDAGNQTS IVRLLEGSDI DIKCVDKGTE GVEEILSGQY DCIILDLGLP
DISGFEVLKQ IESSKLERIP PVIIYTGKEI TDQEQLELNK FSSTIVLKGV GSGERLLDDI
SLFLHDIESR FATDSQKTIH MLHDEDAMFQ ERKVLIVDDD MRNTYALSKK LIEYGFEVEM
AHNGKEAVEQ LTEDKSFELV LMDTMMPEMD GYQATKRIRE MEHYKQVPII ALTAKTMPED
REKSLQSGAS EYLTKPIDFE KLLSIMRIWL FKH
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