| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pcar_1055 |
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| Symbol | |
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| ID | 3723918 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pelobacter carbinolicus DSM 2380 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007498 |
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| Strand | - |
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| Start bp | 1237226 |
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| End bp | 1239430 |
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| Gene Length | 2205 bp |
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| Protein Length | 734 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 637750646 |
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| Product | two component signal transduction response regulator |
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| Protein accession | YP_356475 |
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| Protein GI | 77918660 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 0.0148851 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACAGATC GAGAATCGAC AAGGCCGGCC ATGATTCAGA TCGTGGATGA CGACCCGGCC
ATGCGACTGC TGACCCGGGC CACCCTGGAA CAAGCCGGGT TCTCGGTCAT TGAATCGGCG
GATGGCAGCG AAGGGGTGTC GCTGTTTCGA AAAATGCGCC CGGATCTGGT ACTGCTCGAC
GTTATCATGC CGCAAATGGA CGGTTTCAAC GTCTGCCGCC TGTTGCGCAA ACTTCCGGAA
GGCAAAGAGA TCCCCATCAT CATGCTGACC GGCATGGACG ATGTGGAATC GGTACGGAAA
GCTTTCGATG CCGGTGCGAC GGATTTCATC GGCAAACCGA TCAACTGGCT TCTGTTGCGT
TACCGGGTCA TGCACATGCT GCGCTCCGCA CGCCTGTGTG AAGATCTCAG GGTGAGCCAG
GCGCGAATTT CACTGGCCCA GCGAATCGCC CATCTGGGAC ATTGGCATTT CAATTTCAAA
ACCAAGGATT TTGTCTGCAG CGACGCGGTA CTCTCCTTAC TGGACAGAAG AGATGACATA
TCCGTGCATA ACCCCGAATC GTTGCTGCGG AATATCCACC CGGACGACAA ACCGCGGGTA
CAGGCGGCGC TTGAAAACGC CATCGGCAAC CGTCAACCGT ATCAGGAAAA TTACCGAATC
AACGTGCAAG GTGAAGAGCG ACGCATCAAC AGTCAGGGGG AAATCCAAAC AAACGGAAAC
GGCGAACCCG AGGCCATAAC CGGCATCATT CAGGATGTAA CCGATATTTA TCACGCCGAA
CAGAAAATAT TCCGCTTGGC CCACTTCGAT GCCCTGACCG GTCTGGCCAA ACGCAAGTTT
TTCATGGAAA AACTGGCTGA AGCTGTTTTC CTTACCGAAC ACGGTCACGG ACAACTGGCG
GTCATGATCC TCGACCTGGA TCGATTCAAG CGTATCAACG AAAATCTCGG CCATGTCCCG
GGTGACCAGA TCTTGCGTAA AATGGCCAAA CGTATTCAAA GAAGCCTCCA GCAATGCCAT
GTCCTGTACC CGAGTTCTTT GACCGAAGAC CATTGCATCG CACGATTCGG AGGCAACGAA
TTCGCCATCC TGCTGCCTGA AGTCCAGGAT ACCCATCAGG TCAACCGCAT TGCCGGACAC
CTCCTCAAGG ACATAGCCCA ACCATTCACG TTCGACAACT GTGAAGTACT CATAACCACC
AGTATCGGCA TCTGCCTGTT TCCCGAGGGA AGCGACGATC AGCAAGACAT CATCCGCAAT
GCCGACATCG CCTTGCGTCA AGCCAAAAGC CAGGGCCGGG ACACCTTCCG GCTCTATCAT
CCGTCCATGG GCAAACCGAC CCAGGATCGC CTGATCCTTG AAAACGATCT GCGCAACGCG
CTCAAAAACG ACGAATTCGT CCTGTATTTT CAACCCCAGG TGGATATACG CAGCGGACAA
CTTCTTGGAG CCGAGACCCT GATTCGCTGG CAACACCCCC AACAGGGACT CAAGCTCCCC
GGCGCATTCC TCCCCCTGGC CCTGGAATCC GGCCTGATTA TCGAGATTGA TCAGTGGGTA
TTGCGCCAGG CCTGCGCCCA GATCGCCAGA TGGCAGGCCG CCGGATACGA CAAACTGCGC
CTGTCGGTGA ATGTGTCGGG ACAGCTTTTC GCACAGGAGG GTGTCGCCGC TTTGATAAGC
GACATTGTCC GACAAAGCGG CATCCCGACC GGTGCGTTGG AAATCGAATT GACGGAAAAC
ACCCTCATGC AGAACAACGC ACAAACCATC AGCACCCTGA CCGACCTGAA ACAACTCGGT
ACCAATATCG CCATCGACGA TTTTGGTACC GGATATTCTT CGTTGAGCTA TCTGAAAAAT
TTTCCCATCG ACACCCTCAA AATCGACCGC TCGTTCATTC GCGACCTGGA AAACGCCCCC
GGCGACATCG CCATTACCCG TACGATTATT GCCCTGGGTG AAAATCTCGG GCTGACCACC
ATCTGCGAAG GTATCGAAAC CCATCAGCAA AAGGACCTCC TGGTGGATCT GGGGTGCTAT
ATCGGGCAGG GTTATCTTTT CGCCCGACCT GAAAATCTCG AAGCTTTCTC CCTGCGCCTG
GCGCAACAGA AAAACCGAAA TCGCGTCGGC CCCGCCGTTT CCGAGAACCA AAATGACTCT
TCTCAGTCCG AACAGGAATT TATGCACTAT AATTTGGGGC AGTGA
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| Protein sequence | MTDRESTRPA MIQIVDDDPA MRLLTRATLE QAGFSVIESA DGSEGVSLFR KMRPDLVLLD
VIMPQMDGFN VCRLLRKLPE GKEIPIIMLT GMDDVESVRK AFDAGATDFI GKPINWLLLR
YRVMHMLRSA RLCEDLRVSQ ARISLAQRIA HLGHWHFNFK TKDFVCSDAV LSLLDRRDDI
SVHNPESLLR NIHPDDKPRV QAALENAIGN RQPYQENYRI NVQGEERRIN SQGEIQTNGN
GEPEAITGII QDVTDIYHAE QKIFRLAHFD ALTGLAKRKF FMEKLAEAVF LTEHGHGQLA
VMILDLDRFK RINENLGHVP GDQILRKMAK RIQRSLQQCH VLYPSSLTED HCIARFGGNE
FAILLPEVQD THQVNRIAGH LLKDIAQPFT FDNCEVLITT SIGICLFPEG SDDQQDIIRN
ADIALRQAKS QGRDTFRLYH PSMGKPTQDR LILENDLRNA LKNDEFVLYF QPQVDIRSGQ
LLGAETLIRW QHPQQGLKLP GAFLPLALES GLIIEIDQWV LRQACAQIAR WQAAGYDKLR
LSVNVSGQLF AQEGVAALIS DIVRQSGIPT GALEIELTEN TLMQNNAQTI STLTDLKQLG
TNIAIDDFGT GYSSLSYLKN FPIDTLKIDR SFIRDLENAP GDIAITRTII ALGENLGLTT
ICEGIETHQQ KDLLVDLGCY IGQGYLFARP ENLEAFSLRL AQQKNRNRVG PAVSENQNDS
SQSEQEFMHY NLGQ
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