More than 300 homologs were found in PanDaTox collection
for query gene Daro_1669 on replicon NC_007298
Organism: Dechloromonas aromatica RCB



Page 1 of 3    << first  < prev  1  2  3    next >  last >>   


Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_007298  Daro_1669  Crp/FNR family transcriptional regulator  100 
 
 
233 aa  476  1e-133  Dechloromonas aromatica RCB  Bacteria  normal  normal 
 
 
-
 
NC_007298  Daro_3198  Crp/FNR family transcriptional regulator  57.39 
 
 
231 aa  286  2e-76  Dechloromonas aromatica RCB  Bacteria  normal  normal 
 
 
-
 
NC_007298  Daro_1036  cyclic nucleotide-binding  56.52 
 
 
245 aa  276  3e-73  Dechloromonas aromatica RCB  Bacteria  normal  normal 
 
 
-
 
NC_011662  Tmz1t_2606  transcriptional regulator, Crp/Fnr family  48.4 
 
 
253 aa  227  1e-58  Thauera sp. MZ1T  Bacteria  normal  0.193309  n/a   
 
 
-
 
NC_009080  BMA10247_1706  cyclic nucleotide-binding protein  44.69 
 
 
230 aa  207  9e-53  Burkholderia mallei NCTC 10247  Bacteria  normal  0.450772  n/a   
 
 
-
 
NC_008836  BMA10229_A2895  cyclic nucleotide-binding domain-containing protein  44.69 
 
 
230 aa  207  9e-53  Burkholderia mallei NCTC 10229  Bacteria  normal  0.869141  n/a   
 
 
-
 
NC_009076  BURPS1106A_2752  cyclic nucleotide-binding protein  44.69 
 
 
230 aa  207  9e-53  Burkholderia pseudomallei 1106a  Bacteria  normal  0.339389  n/a   
 
 
-
 
NC_008785  BMASAVP1_A2392  cyclic nucleotide-binding domain-containing protein  44.69 
 
 
230 aa  207  9e-53  Burkholderia mallei SAVP1  Bacteria  normal  n/a   
 
 
-
 
NC_006348  BMA0619  cyclic nucleotide-binding domain-containing protein  45.13 
 
 
229 aa  207  1e-52  Burkholderia mallei ATCC 23344  Bacteria  normal  n/a   
 
 
-
 
NC_007434  BURPS1710b_2817  cyclic nucleotide-binding domain-containing protein  45.13 
 
 
229 aa  207  1e-52  Burkholderia pseudomallei 1710b  Bacteria  normal  n/a   
 
 
-
 
NC_009074  BURPS668_2695  cyclic nucleotide-binding protein  45.13 
 
 
229 aa  207  1e-52  Burkholderia pseudomallei 668  Bacteria  normal  n/a   
 
 
-
 
NC_011662  Tmz1t_1286  transcriptional regulator, Crp/Fnr family  46.82 
 
 
227 aa  205  4e-52  Thauera sp. MZ1T  Bacteria  normal  n/a   
 
 
-
 
NC_007651  BTH_I1801  cyclic nucleotide-binding domain-containing protein  44.69 
 
 
229 aa  205  5e-52  Burkholderia thailandensis E264  Bacteria  normal  n/a   
 
 
-
 
NC_010524  Lcho_1454  Crp/FNR family transcriptional regulator  38.87 
 
 
252 aa  190  1e-47  Leptothrix cholodnii SP-6  Bacteria  n/a    normal 
 
 
-
 
NC_007908  Rfer_0060  Crp/FNR family transcriptional regulator  44.04 
 
 
234 aa  188  5.999999999999999e-47  Rhodoferax ferrireducens T118  Bacteria  normal  0.237094  n/a   
 
 
-
 
NC_011992  Dtpsy_1709  transcriptional regulator, Crp/Fnr family  39.34 
 
 
254 aa  183  2.0000000000000003e-45  Acidovorax ebreus TPSY  Bacteria  normal  0.0525745  n/a   
 
 
-
 
NC_008782  Ajs_1904  CRP/FNR family transcriptional regulator  39.34 
 
 
254 aa  183  2.0000000000000003e-45  Acidovorax sp. JS42  Bacteria  normal  0.0603838  normal  0.510939 
 
 
-
 
NC_013510  Tcur_0407  transcriptional regulator, Crp/Fnr family  42.52 
 
 
243 aa  174  9.999999999999999e-43  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_008825  Mpe_A1691  CRP/FNR family transcriptional regulator  41.26 
 
 
232 aa  172  5e-42  Methylibium petroleiphilum PM1  Bacteria  hitchhiker  0.00272653  normal  0.637065 
 
 
-
 
NC_011992  Dtpsy_3443  transcriptional regulator, Crp/Fnr family  34.51 
 
 
229 aa  160  2e-38  Acidovorax ebreus TPSY  Bacteria  normal  0.12986  n/a   
 
 
-
 
NC_009953  Sare_4620  Crp/FNR family transcriptional regulator  36.99 
 
 
237 aa  148  9e-35  Salinispora arenicola CNS-205  Bacteria  normal  normal  0.128051 
 
 
-
 
NC_003296  RS02297  transcription regulator protein  35.43 
 
 
225 aa  134  8e-31  Ralstonia solanacearum GMI1000  Bacteria  normal  normal  0.419231 
 
 
-
 
NC_010678  Rpic_4660  transcriptional regulator, Crp/Fnr family  34.62 
 
 
225 aa  131  7.999999999999999e-30  Ralstonia pickettii 12J  Bacteria  normal  normal 
 
 
-
 
NC_012857  Rpic12D_3583  transcriptional regulator, Crp/Fnr family  34.62 
 
 
225 aa  131  7.999999999999999e-30  Ralstonia pickettii 12D  Bacteria  normal  normal 
 
 
-
 
NC_012856  Rpic12D_1785  transcriptional regulator, Crp/Fnr family  34.27 
 
 
225 aa  128  8.000000000000001e-29  Ralstonia pickettii 12D  Bacteria  normal  0.0232074  normal  0.813169 
 
 
-
 
NC_010682  Rpic_2109  transcriptional regulator, Crp/Fnr family  33.33 
 
 
225 aa  124  9e-28  Ralstonia pickettii 12J  Bacteria  normal  0.170093  normal 
 
 
-
 
NC_011206  Lferr_0981  transcriptional regulator, Crp/Fnr family  34.15 
 
 
246 aa  123  2e-27  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria  normal  normal  0.0154476 
 
 
-
 
NC_011761  AFE_0857  transcriptional regulator, Crp/Fnr family  34.15 
 
 
229 aa  123  3e-27  Acidithiobacillus ferrooxidans ATCC 23270  Bacteria  normal  n/a   
 
 
-
 
NC_007498  Pcar_1491  Crp/FNR family transcriptional regulator  32.39 
 
 
224 aa  118  9.999999999999999e-26  Pelobacter carbinolicus DSM 2380  Bacteria  hitchhiker  0.00000000413534  n/a   
 
 
-
 
NC_007954  Sden_3444  cyclic nucleotide-binding  31.42 
 
 
250 aa  117  1.9999999999999998e-25  Shewanella denitrificans OS217  Bacteria  normal  n/a   
 
 
-
 
NC_009656  PSPA7_0628  transcriptional regulator Dnr  31.86 
 
 
227 aa  115  5e-25  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_008463  PA14_06870  transcriptional regulator Dnr  31.86 
 
 
227 aa  114  8.999999999999998e-25  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  0.156456  normal 
 
 
-
 
NC_011206  Lferr_1356  transcriptional regulator, Crp/Fnr family  32.87 
 
 
222 aa  112  4.0000000000000004e-24  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria  normal  normal 
 
 
-
 
NC_007404  Tbd_0079  Crp/FNR family transcriptional regulator  30.62 
 
 
225 aa  112  4.0000000000000004e-24  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  0.849443  normal  0.162256 
 
 
-
 
NC_011662  Tmz1t_4014  transcriptional regulator, Crp/Fnr family  31.71 
 
 
233 aa  112  4.0000000000000004e-24  Thauera sp. MZ1T  Bacteria  normal  n/a   
 
 
-
 
NC_011761  AFE_1658  transcriptional regulator, Crp/Fnr family  32.87 
 
 
222 aa  112  4.0000000000000004e-24  Acidithiobacillus ferrooxidans ATCC 23270  Bacteria  normal  0.365354  n/a   
 
 
-
 
NC_009943  Dole_2102  Crp/FNR family transcriptional regulator  31.78 
 
 
226 aa  111  9e-24  Desulfococcus oleovorans Hxd3  Bacteria  hitchhiker  0.000889631  n/a   
 
 
-
 
NC_008576  Mmc1_1531  Crp/FNR family transcriptional regulator  32.2 
 
 
239 aa  109  3e-23  Magnetococcus sp. MC-1  Bacteria  normal  0.169257  normal 
 
 
-
 
NC_007348  Reut_B5062  cyclic nucleotide-binding  33.96 
 
 
254 aa  108  9.000000000000001e-23  Ralstonia eutropha JMP134  Bacteria  normal  0.319018  n/a   
 
 
-
 
NC_008576  Mmc1_0460  Crp/FNR family transcriptional regulator  31.86 
 
 
232 aa  107  1e-22  Magnetococcus sp. MC-1  Bacteria  normal  normal  0.884408 
 
 
-
 
NC_010571  Oter_2867  Crp/FNR family transcriptional regulator  29.36 
 
 
241 aa  106  2e-22  Opitutus terrae PB90-1  Bacteria  normal  0.343371  normal  0.792405 
 
 
-
 
NC_013223  Dret_1279  transcriptional regulator, Crp/Fnr family  29.81 
 
 
227 aa  106  3e-22  Desulfohalobium retbaense DSM 5692  Bacteria  normal  0.0123359  normal  0.583782 
 
 
-
 
NC_013173  Dbac_2118  transcriptional regulator, Crp/Fnr family  31.9 
 
 
227 aa  105  4e-22  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  0.545546  n/a   
 
 
-
 
NC_010571  Oter_0906  Crp/FNR family transcriptional regulator  30.09 
 
 
238 aa  104  1e-21  Opitutus terrae PB90-1  Bacteria  normal  normal 
 
 
-
 
NC_010814  Glov_2803  transcriptional regulator, Crp/Fnr family  28.37 
 
 
229 aa  103  2e-21  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_011769  DvMF_0993  transcriptional regulator, Crp/Fnr family  26.92 
 
 
229 aa  102  7e-21  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal  0.98476 
 
 
-
 
NC_007404  Tbd_2593  Crp/FNR family transcriptional regulator  31.1 
 
 
254 aa  100  2e-20  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  0.431237  normal  0.296758 
 
 
-
 
NC_011662  Tmz1t_2638  transcriptional regulator, Crp/Fnr family  26.76 
 
 
222 aa  100  2e-20  Thauera sp. MZ1T  Bacteria  normal  n/a   
 
 
-
 
NC_008700  Sama_2685  cAMP-binding protein  30.52 
 
 
272 aa  99.8  3e-20  Shewanella amazonensis SB2B  Bacteria  normal  normal 
 
 
-
 
NC_009092  Shew_3331  Crp/FNR family transcriptional regulator  29.49 
 
 
258 aa  97.8  1e-19  Shewanella loihica PV-4  Bacteria  normal  normal 
 
 
-
 
NC_008554  Sfum_3445  Crp/FNR family transcriptional regulator  30.09 
 
 
228 aa  97.8  1e-19  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  0.90711  unclonable  0.00000836213 
 
 
-
 
NC_008609  Ppro_2600  Crp/FNR family transcriptional regulator  27.83 
 
 
229 aa  97.8  1e-19  Pelobacter propionicus DSM 2379  Bacteria  normal  0.0103419  n/a   
 
 
-
 
NC_007519  Dde_2644  Crp/FNR family transcriptional regulator  27.75 
 
 
248 aa  97.1  2e-19  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  0.446339  n/a   
 
 
-
 
NC_009483  Gura_0851  CRP/FNR family transcriptional regulator  29.58 
 
 
229 aa  93.2  3e-18  Geobacter uraniireducens Rf4  Bacteria  normal  0.0183246  n/a   
 
 
-
 
NC_008751  Dvul_0700  CRP/FNR family transcriptional regulator  27.4 
 
 
228 aa  93.6  3e-18  Desulfovibrio vulgaris DP4  Bacteria  normal  normal  0.259996 
 
 
-
 
NC_008740  Maqu_3081  CRP/FNR family transcriptional regulator  26.77 
 
 
249 aa  91.7  8e-18  Marinobacter aquaeolei VT8  Bacteria  normal  0.0390484  n/a   
 
 
-
 
NC_007517  Gmet_0092  Crp/FNR family transcriptional regulator  28.29 
 
 
230 aa  91.3  1e-17  Geobacter metallireducens GS-15  Bacteria  hitchhiker  0.0000000552774  hitchhiker  0.0000198015 
 
 
-
 
NC_002939  GSU3421  Crp/FNR family transcriptional regulator  26.96 
 
 
241 aa  87.4  2e-16  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_007413  Ava_3187  Crp/FNR family transcriptional regulator  25.44 
 
 
231 aa  87.4  2e-16  Anabaena variabilis ATCC 29413  Bacteria  normal  normal  0.0154809 
 
 
-
 
NC_007643  Rru_A2636  Crp/FNR family transcriptional regulator  30.35 
 
 
234 aa  87  2e-16  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  n/a   
 
 
-
 
NC_011146  Gbem_3406  transcriptional regulator, Crp/Fnr family  27.14 
 
 
227 aa  86.7  3e-16  Geobacter bemidjiensis Bem  Bacteria  normal  0.757412  n/a   
 
 
-
 
NC_012918  GM21_3468  transcriptional regulator, Crp/Fnr family  27.14 
 
 
227 aa  86.3  4e-16  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_011884  Cyan7425_2574  transcriptional regulator, Crp/Fnr family  27.23 
 
 
236 aa  85.1  9e-16  Cyanothece sp. PCC 7425  Bacteria  normal  normal 
 
 
-
 
NC_013223  Dret_1643  transcriptional regulator, Crp/Fnr family  26.79 
 
 
227 aa  84.3  0.000000000000001  Desulfohalobium retbaense DSM 5692  Bacteria  normal  normal 
 
 
-
 
NC_009952  Dshi_3189  transcriptional regulator  27.27 
 
 
236 aa  83.2  0.000000000000003  Dinoroseobacter shibae DFL 12  Bacteria  normal  normal 
 
 
-
 
NC_011899  Hore_18160  putative transcriptional regulator, Crp/Fnr family  24.17 
 
 
219 aa  80.9  0.00000000000002  Halothermothrix orenii H 168  Bacteria  hitchhiker  0.000000607267  n/a   
 
 
-
 
NC_007298  Daro_3322  cyclic nucleotide-binding  28.02 
 
 
495 aa  80.1  0.00000000000003  Dechloromonas aromatica RCB  Bacteria  normal  hitchhiker  0.000319874 
 
 
-
 
NC_007925  RPC_3945  Crp/FNR family transcriptional regulator  26.6 
 
 
240 aa  78.6  0.00000000000008  Rhodopseudomonas palustris BisB18  Bacteria  decreased coverage  0.0000374248  normal 
 
 
-
 
NC_011899  Hore_05940  putative transcriptional regulator, Crp/Fnr family  28.1 
 
 
231 aa  78.6  0.00000000000008  Halothermothrix orenii H 168  Bacteria  normal  0.558941  n/a   
 
 
-
 
NC_010320  Teth514_2386  CRP/FNR family transcriptional regulator  23.15 
 
 
225 aa  77.8  0.0000000000001  Thermoanaerobacter sp. X514  Bacteria  normal  n/a   
 
 
-
 
NC_009636  Smed_2376  CRP/FNR family transcriptional regulator  29.95 
 
 
226 aa  77.4  0.0000000000002  Sinorhizobium medicae WSM419  Bacteria  normal  normal  0.253524 
 
 
-
 
NC_008262  CPR_2531  cyclic nucleotide-binding domain-containing protein  24.2 
 
 
226 aa  77.4  0.0000000000002  Clostridium perfringens SM101  Bacteria  normal  n/a   
 
 
-
 
NC_011004  Rpal_0740  transcriptional regulator, Crp/Fnr family  24.54 
 
 
255 aa  76.3  0.0000000000004  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_007925  RPC_1012  Crp/FNR family transcriptional regulator  24.07 
 
 
241 aa  76.3  0.0000000000004  Rhodopseudomonas palustris BisB18  Bacteria  normal  0.88102  normal  0.736744 
 
 
-
 
NC_008261  CPF_2845  cyclic nucleotide-binding domain-containing protein  23.74 
 
 
226 aa  75.9  0.0000000000005  Clostridium perfringens ATCC 13124  Bacteria  normal  n/a   
 
 
-
 
NC_009952  Dshi_3191  transcriptional regulator Dnr  22.79 
 
 
227 aa  75.1  0.0000000000009  Dinoroseobacter shibae DFL 12  Bacteria  normal  normal 
 
 
-
 
NC_008699  Noca_1619  cyclic nucleotide-binding  28.11 
 
 
235 aa  73.6  0.000000000003  Nocardioides sp. JS614  Bacteria  normal  0.146026  n/a   
 
 
-
 
NC_007651  BTH_I0747  transcriptional regulator, putative  24.88 
 
 
266 aa  73.2  0.000000000003  Burkholderia thailandensis E264  Bacteria  normal  0.59923  n/a   
 
 
-
 
NC_008390  Bamb_2589  Crp/FNR family transcriptional regulator  23.91 
 
 
235 aa  73.6  0.000000000003  Burkholderia ambifaria AMMD  Bacteria  normal  0.0679634  n/a   
 
 
-
 
NC_006348  BMA2266  transcriptional regulator, putative  25.6 
 
 
251 aa  73.2  0.000000000004  Burkholderia mallei ATCC 23344  Bacteria  normal  0.578468  n/a   
 
 
-
 
NC_007434  BURPS1710b_1089  cyclic nucleotide-binding protein  25.6 
 
 
251 aa  73.2  0.000000000004  Burkholderia pseudomallei 1710b  Bacteria  normal  0.30583  n/a   
 
 
-
 
NC_007498  Pcar_2562  cyclic AMP receptor protein  28.29 
 
 
222 aa  72.8  0.000000000004  Pelobacter carbinolicus DSM 2380  Bacteria  normal  0.553837  n/a   
 
 
-
 
NC_009074  BURPS668_0934  cyclic nucleotide-binding  25.6 
 
 
251 aa  73.2  0.000000000004  Burkholderia pseudomallei 668  Bacteria  normal  0.059861  n/a   
 
 
-
 
NC_009076  BURPS1106A_0938  cyclic nucleotide-binding protein  25.6 
 
 
251 aa  73.2  0.000000000004  Burkholderia pseudomallei 1106a  Bacteria  normal  0.914927  n/a   
 
 
-
 
NC_009080  BMA10247_2143  putative transcriptional regulator  25.6 
 
 
251 aa  73.2  0.000000000004  Burkholderia mallei NCTC 10247  Bacteria  normal  n/a   
 
 
-
 
NC_011898  Ccel_1678  transcriptional regulator, Crp/Fnr family  23.58 
 
 
234 aa  72.4  0.000000000006  Clostridium cellulolyticum H10  Bacteria  normal  n/a   
 
 
-
 
NC_010508  Bcenmc03_2565  Crp/FNR family transcriptional regulator  24.34 
 
 
235 aa  72.4  0.000000000006  Burkholderia cenocepacia MC0-3  Bacteria  normal  0.0695171  normal  0.0307054 
 
 
-
 
NC_011989  Avi_3466  regulator of Biofilm formation Fnr Family  23.35 
 
 
235 aa  72  0.000000000007  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_008060  Bcen_1929  Crp/FNR family transcriptional regulator  24.34 
 
 
235 aa  72  0.000000000008  Burkholderia cenocepacia AU 1054  Bacteria  normal  0.589711  n/a   
 
 
-
 
NC_010718  Nther_2034  transcriptional regulator, Crp/Fnr family  24.57 
 
 
243 aa  72  0.000000000008  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  normal  0.663242  normal  0.0439569 
 
 
-
 
NC_008542  Bcen2424_2541  Crp/FNR family transcriptional regulator  24.34 
 
 
235 aa  72  0.000000000008  Burkholderia cenocepacia HI2424  Bacteria  hitchhiker  0.000812643  n/a   
 
 
-
 
NC_013174  Jden_1939  transcriptional regulator, Crp/Fnr family  27.73 
 
 
235 aa  71.6  0.000000000009  Jonesia denitrificans DSM 20603  Bacteria  normal  normal 
 
 
-
 
NC_007958  RPD_1522  cyclic nucleotide-binding  23.15 
 
 
241 aa  71.6  0.000000000009  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.500349  normal  0.967279 
 
 
-
 
NC_013132  Cpin_4234  transcriptional regulator, Crp/Fnr family  23.58 
 
 
248 aa  71.2  0.00000000001  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_008262  CPR_1062  Crp/FNR family transcriptional regulator  27.23 
 
 
236 aa  71.6  0.00000000001  Clostridium perfringens SM101  Bacteria  normal  n/a   
 
 
-
 
NC_011662  Tmz1t_1763  transcriptional regulator, Crp/Fnr family  25.5 
 
 
223 aa  70.5  0.00000000002  Thauera sp. MZ1T  Bacteria  normal  0.796832  n/a   
 
 
-
 
NC_012850  Rleg_3301  transcriptional regulator, Crp/Fnr family  25.86 
 
 
227 aa  70.5  0.00000000002  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.306356 
 
 
-
 
NC_008261  CPF_1250  Crp/FNR family transcriptional regulator  26.81 
 
 
236 aa  70.5  0.00000000002  Clostridium perfringens ATCC 13124  Bacteria  normal  0.403908  n/a   
 
 
-
 
NC_010084  Bmul_0755  Crp/FNR family transcriptional regulator  25.22 
 
 
235 aa  70.5  0.00000000002  Burkholderia multivorans ATCC 17616  Bacteria  normal  0.027549  normal  0.149867 
 
 
-
 
NC_007510  Bcep18194_A5872  Crp/FNR family transcriptional regulator  24.35 
 
 
235 aa  70.1  0.00000000003  Burkholderia sp. 383  Bacteria  normal  0.142608  normal  0.264846 
 
 
-
 
Page 1 of 3    << first  < prev  1  2  3    next >  last >>