More than 300 homologs were found in PanDaTox collection
for query gene Bamb_3723 on replicon NC_008391
Organism: Burkholderia ambifaria AMMD



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_008391  Bamb_3723  short-chain dehydrogenase/reductase SDR  100 
 
 
266 aa  531  1e-150  Burkholderia ambifaria AMMD  Bacteria  normal  0.662669  normal  0.858524 
 
 
-
 
NC_010552  BamMC406_4199  short-chain dehydrogenase/reductase SDR  98.5 
 
 
266 aa  521  1e-147  Burkholderia ambifaria MC40-6  Bacteria  normal  0.308915  normal  0.0922746 
 
 
-
 
NC_007511  Bcep18194_B1706  Short-chain dehydrogenase/reductase SDR  91.32 
 
 
266 aa  494  1e-139  Burkholderia sp. 383  Bacteria  normal  0.951732  normal 
 
 
-
 
NC_008061  Bcen_4061  short-chain dehydrogenase/reductase SDR  91.35 
 
 
281 aa  496  1e-139  Burkholderia cenocepacia AU 1054  Bacteria  normal  0.786818  n/a   
 
 
-
 
NC_008543  Bcen2424_4305  short-chain dehydrogenase/reductase SDR  91.35 
 
 
281 aa  496  1e-139  Burkholderia cenocepacia HI2424  Bacteria  normal  normal  0.699263 
 
 
-
 
NC_010515  Bcenmc03_3212  short-chain dehydrogenase/reductase SDR  90.6 
 
 
266 aa  493  9.999999999999999e-139  Burkholderia cenocepacia MC0-3  Bacteria  normal  0.177624  normal 
 
 
-
 
NC_010086  Bmul_4300  short-chain dehydrogenase/reductase SDR  87.97 
 
 
266 aa  479  1e-134  Burkholderia multivorans ATCC 17616  Bacteria  normal  0.498015  normal 
 
 
-
 
NC_007974  Rmet_4523  short-chain dehydrogenase/reductase SDR  79.7 
 
 
266 aa  431  1e-120  Cupriavidus metallidurans CH34  Bacteria  normal  0.642907  decreased coverage  0.0040913 
 
 
-
 
NC_007347  Reut_A1901  Short-chain dehydrogenase/reductase SDR  75.19 
 
 
266 aa  382  1e-105  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_007492  Pfl01_2716  Short-chain dehydrogenase/reductase SDR  65.53 
 
 
265 aa  358  6e-98  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal  0.490599 
 
 
-
 
NC_010623  Bphy_4200  short-chain dehydrogenase/reductase SDR  68.44 
 
 
271 aa  358  6e-98  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_010322  PputGB1_3070  short-chain dehydrogenase/reductase SDR  65.78 
 
 
265 aa  355  2.9999999999999997e-97  Pseudomonas putida GB-1  Bacteria  normal  0.0355963  normal 
 
 
-
 
NC_012850  Rleg_3582  short-chain dehydrogenase/reductase SDR  65.66 
 
 
265 aa  355  2.9999999999999997e-97  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.15353 
 
 
-
 
NC_011666  Msil_0129  short-chain dehydrogenase/reductase SDR  66.67 
 
 
271 aa  352  2.9999999999999997e-96  Methylocella silvestris BL2  Bacteria  n/a    normal 
 
 
-
 
NC_010681  Bphyt_3970  short-chain dehydrogenase/reductase SDR  63.98 
 
 
270 aa  340  2e-92  Burkholderia phytofirmans PsJN  Bacteria  normal  normal 
 
 
-
 
NC_007951  Bxe_A4474  putative short-chain dehydrogenase/reductase SDR  63.6 
 
 
270 aa  334  7e-91  Burkholderia xenovorans LB400  Bacteria  normal  hitchhiker  0.000662369 
 
 
-
 
NC_011368  Rleg2_5185  short-chain dehydrogenase/reductase SDR  62.26 
 
 
285 aa  333  2e-90  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal 
 
 
-
 
NC_011894  Mnod_1035  short-chain dehydrogenase/reductase SDR  63.4 
 
 
270 aa  326  3e-88  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.0312813  n/a   
 
 
-
 
NC_010511  M446_3566  short-chain dehydrogenase/reductase SDR  67.94 
 
 
269 aa  320  9.999999999999999e-87  Methylobacterium sp. 4-46  Bacteria  normal  normal  0.138362 
 
 
-
 
NC_009485  BBta_3264  putative oxidoreductase protein  62.21 
 
 
264 aa  319  3e-86  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.724633  normal 
 
 
-
 
NC_010725  Mpop_0718  short-chain dehydrogenase/reductase SDR  66.28 
 
 
263 aa  315  6e-85  Methylobacterium populi BJ001  Bacteria  normal  0.520585  normal 
 
 
-
 
NC_011757  Mchl_0153  short-chain dehydrogenase/reductase SDR  66.92 
 
 
262 aa  315  7e-85  Methylobacterium chloromethanicum CM4  Bacteria  normal  0.418257  normal  0.135019 
 
 
-
 
NC_010172  Mext_0209  short-chain dehydrogenase/reductase SDR  65.77 
 
 
262 aa  307  1.0000000000000001e-82  Methylobacterium extorquens PA1  Bacteria  normal  0.128983  normal 
 
 
-
 
NC_012858  Rleg_6849  short-chain dehydrogenase/reductase SDR  57.63 
 
 
269 aa  307  1.0000000000000001e-82  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.674583 
 
 
-
 
NC_009720  Xaut_1294  short-chain dehydrogenase/reductase SDR  63.71 
 
 
266 aa  305  4.0000000000000004e-82  Xanthobacter autotrophicus Py2  Bacteria  normal  normal 
 
 
-
 
NC_008048  Sala_0082  short-chain dehydrogenase/reductase SDR  59.25 
 
 
269 aa  297  1e-79  Sphingopyxis alaskensis RB2256  Bacteria  normal  normal 
 
 
-
 
NC_009621  Smed_5531  short-chain dehydrogenase/reductase SDR  56.11 
 
 
269 aa  295  4e-79  Sinorhizobium medicae WSM419  Bacteria  normal  0.356237  normal  0.14087 
 
 
-
 
NC_010505  Mrad2831_1275  short-chain dehydrogenase/reductase SDR  60.3 
 
 
271 aa  294  1e-78  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal 
 
 
-
 
NC_010505  Mrad2831_4718  short-chain dehydrogenase/reductase SDR  57.2 
 
 
270 aa  288  9e-77  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal 
 
 
-
 
NC_008463  PA14_63890  putative short-chain dehydrogenase  56.64 
 
 
265 aa  276  3e-73  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal 
 
 
-
 
NC_009656  PSPA7_5551  putative short-chain dehydrogenase  56.42 
 
 
265 aa  274  1.0000000000000001e-72  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_011666  Msil_0380  short-chain dehydrogenase/reductase SDR  51.53 
 
 
265 aa  274  1.0000000000000001e-72  Methylocella silvestris BL2  Bacteria  n/a    normal  0.453235 
 
 
-
 
NC_009621  Smed_5566  short-chain dehydrogenase/reductase SDR  66.49 
 
 
199 aa  257  1e-67  Sinorhizobium medicae WSM419  Bacteria  normal  normal  0.0343056 
 
 
-
 
NC_009832  Spro_3183  short-chain dehydrogenase/reductase SDR  49.81 
 
 
260 aa  252  5.000000000000001e-66  Serratia proteamaculans 568  Bacteria  normal  normal 
 
 
-
 
NC_011365  Gdia_0995  short-chain dehydrogenase/reductase SDR  50 
 
 
267 aa  251  1e-65  Gluconacetobacter diazotrophicus PAl 5  Bacteria  normal  normal 
 
 
-
 
NC_007492  Pfl01_4040  Short-chain dehydrogenase/reductase SDR  52.53 
 
 
264 aa  251  1e-65  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.128419  normal  0.923094 
 
 
-
 
NC_009439  Pmen_1100  short-chain dehydrogenase/reductase SDR  50.57 
 
 
264 aa  251  1e-65  Pseudomonas mendocina ymp  Bacteria  normal  0.576998  normal  0.0165353 
 
 
-
 
NC_002947  PP_2989  short chain dehydrogenase/reductase family oxidoreductase  49.81 
 
 
264 aa  246  3e-64  Pseudomonas putida KT2440  Bacteria  normal  normal  0.0851531 
 
 
-
 
NC_009512  Pput_2703  short-chain dehydrogenase/reductase SDR  49.42 
 
 
264 aa  245  4.9999999999999997e-64  Pseudomonas putida F1  Bacteria  normal  normal 
 
 
-
 
NC_012850  Rleg_0887  short-chain dehydrogenase/reductase SDR  47.49 
 
 
266 aa  244  6.999999999999999e-64  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal 
 
 
-
 
NC_010552  BamMC406_5270  short-chain dehydrogenase/reductase SDR  49.8 
 
 
262 aa  243  1.9999999999999999e-63  Burkholderia ambifaria MC40-6  Bacteria  normal  normal 
 
 
-
 
NC_008391  Bamb_4735  short-chain dehydrogenase/reductase SDR  50.2 
 
 
262 aa  243  1.9999999999999999e-63  Burkholderia ambifaria AMMD  Bacteria  normal  normal 
 
 
-
 
NC_007948  Bpro_2349  short-chain dehydrogenase/reductase SDR  47.88 
 
 
266 aa  243  3e-63  Polaromonas sp. JS666  Bacteria  normal  0.341044  normal 
 
 
-
 
NC_011663  Sbal223_2174  short-chain dehydrogenase/reductase SDR  47.1 
 
 
261 aa  239  2e-62  Shewanella baltica OS223  Bacteria  normal  0.30567  hitchhiker  0.00567391 
 
 
-
 
NC_004578  PSPTO_1864  oxidoreductase, short chain dehydrogenase/reductase family  48.63 
 
 
262 aa  240  2e-62  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_010338  Caul_3460  short-chain dehydrogenase/reductase SDR  50.78 
 
 
269 aa  240  2e-62  Caulobacter sp. K31  Bacteria  normal  0.590645  normal 
 
 
-
 
NC_007908  Rfer_0308  short-chain dehydrogenase/reductase SDR  50.39 
 
 
266 aa  239  2.9999999999999997e-62  Rhodoferax ferrireducens T118  Bacteria  normal  0.130238  n/a   
 
 
-
 
NC_009436  Ent638_2278  short-chain dehydrogenase/reductase SDR  46.72 
 
 
260 aa  239  4e-62  Enterobacter sp. 638  Bacteria  normal  normal  0.161761 
 
 
-
 
NC_009436  Ent638_1512  short-chain dehydrogenase/reductase SDR  46.95 
 
 
264 aa  234  9e-61  Enterobacter sp. 638  Bacteria  normal  normal  0.360234 
 
 
-
 
NC_012792  Vapar_5551  short-chain dehydrogenase/reductase SDR  49.61 
 
 
266 aa  234  1.0000000000000001e-60  Variovorax paradoxus S110  Bacteria  normal  0.614615  n/a   
 
 
-
 
NC_012912  Dd1591_2059  short-chain dehydrogenase/reductase SDR  44.96 
 
 
260 aa  233  2.0000000000000002e-60  Dickeya zeae Ech1591  Bacteria  normal  n/a   
 
 
-
 
NC_007492  Pfl01_2478  Short-chain dehydrogenase/reductase SDR  47.86 
 
 
262 aa  230  2e-59  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal 
 
 
-
 
NC_007005  Psyr_3539  Short-chain dehydrogenase/reductase SDR  45.49 
 
 
262 aa  229  4e-59  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal  0.0684522 
 
 
-
 
NC_009485  BBta_5145  putative Short-chain dehydrogenase/reductase SDR  48.85 
 
 
267 aa  228  5e-59  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.645114  normal  0.0551529 
 
 
-
 
NC_011071  Smal_2007  short-chain dehydrogenase/reductase SDR  49.41 
 
 
262 aa  219  3e-56  Stenotrophomonas maltophilia R551-3  Bacteria  normal  0.511264  normal 
 
 
-
 
NC_012912  Dd1591_3491  short-chain dehydrogenase/reductase SDR  46.67 
 
 
287 aa  214  9e-55  Dickeya zeae Ech1591  Bacteria  normal  0.210779  n/a   
 
 
-
 
NC_013421  Pecwa_2365  short-chain dehydrogenase/reductase SDR  44.53 
 
 
257 aa  205  6e-52  Pectobacterium wasabiae WPP163  Bacteria  normal  n/a   
 
 
-
 
NC_010338  Caul_0512  short-chain dehydrogenase/reductase SDR  42.64 
 
 
269 aa  200  3e-50  Caulobacter sp. K31  Bacteria  normal  normal 
 
 
-
 
NC_010002  Daci_5779  short-chain dehydrogenase/reductase SDR  46.56 
 
 
268 aa  197  2.0000000000000003e-49  Delftia acidovorans SPH-1  Bacteria  normal  hitchhiker  0.00272439 
 
 
-
 
NC_010505  Mrad2831_4444  short-chain dehydrogenase/reductase SDR  52.67 
 
 
264 aa  195  7e-49  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.241971  normal 
 
 
-
 
NC_007511  Bcep18194_B0958  Short-chain dehydrogenase/reductase SDR  44.53 
 
 
263 aa  194  1e-48  Burkholderia sp. 383  Bacteria  normal  normal 
 
 
-
 
NC_009664  Krad_2466  short-chain dehydrogenase/reductase SDR  43.48 
 
 
283 aa  176  3e-43  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal 
 
 
-
 
NC_013131  Caci_6716  short-chain dehydrogenase/reductase SDR  42.28 
 
 
259 aa  163  3e-39  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.543445  normal 
 
 
-
 
NC_009380  Strop_0124  short-chain dehydrogenase/reductase SDR  41.7 
 
 
269 aa  162  5.0000000000000005e-39  Salinispora tropica CNB-440  Bacteria  normal  normal 
 
 
-
 
NC_013510  Tcur_3579  short-chain dehydrogenase/reductase SDR  42.41 
 
 
258 aa  160  2e-38  Thermomonospora curvata DSM 43183  Bacteria  normal  0.392131  n/a   
 
 
-
 
NC_013159  Svir_38500  short-chain dehydrogenase of unknown substrate specificity  43.75 
 
 
253 aa  160  3e-38  Saccharomonospora viridis DSM 43017  Bacteria  normal  normal 
 
 
-
 
NC_014165  Tbis_2195  short-chain dehydrogenase/reductase SDR  40.71 
 
 
250 aa  155  4e-37  Thermobispora bispora DSM 43833  Bacteria  normal  normal  0.92313 
 
 
-
 
NC_009953  Sare_0129  short-chain dehydrogenase/reductase SDR  40.81 
 
 
269 aa  155  7e-37  Salinispora arenicola CNS-205  Bacteria  normal  decreased coverage  0.0000288771 
 
 
-
 
NC_008699  Noca_1466  short-chain dehydrogenase/reductase SDR  40.44 
 
 
253 aa  153  2.9999999999999998e-36  Nocardioides sp. JS614  Bacteria  normal  0.0605466  n/a   
 
 
-
 
NC_013510  Tcur_1833  short-chain dehydrogenase/reductase SDR  40.44 
 
 
252 aa  152  4e-36  Thermomonospora curvata DSM 43183  Bacteria  normal  0.092001  n/a   
 
 
-
 
NC_014148  Plim_1352  short-chain dehydrogenase/reductase SDR  36.06 
 
 
271 aa  152  7e-36  Planctomyces limnophilus DSM 3776  Bacteria  normal  0.708878  n/a   
 
 
-
 
NC_008726  Mvan_3113  short-chain dehydrogenase/reductase SDR  40.09 
 
 
262 aa  151  1e-35  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  normal  0.999856 
 
 
-
 
NC_009718  Fnod_0523  short-chain dehydrogenase/reductase SDR  36.89 
 
 
255 aa  147  1.0000000000000001e-34  Fervidobacterium nodosum Rt17-B1  Bacteria  normal  n/a   
 
 
-
 
NC_008463  PA14_08440  putative short chain alcohol dehydrogenase  38.67 
 
 
266 aa  147  2.0000000000000003e-34  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  hitchhiker  0.0000000229698 
 
 
-
 
NC_013161  Cyan8802_0137  short-chain dehydrogenase/reductase SDR  37.84 
 
 
261 aa  146  3e-34  Cyanothece sp. PCC 8802  Bacteria  normal  hitchhiker  0.00000076045 
 
 
-
 
NC_014151  Cfla_2979  short-chain dehydrogenase/reductase SDR  39.47 
 
 
269 aa  145  7.0000000000000006e-34  Cellulomonas flavigena DSM 20109  Bacteria  normal  normal 
 
 
-
 
NC_012669  Bcav_3647  short-chain dehydrogenase/reductase SDR  39.91 
 
 
255 aa  145  8.000000000000001e-34  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal 
 
 
-
 
NC_009656  PSPA7_0799  short chain dehydrogenase/reductase family oxidoreductase  38.67 
 
 
266 aa  144  2e-33  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_011726  PCC8801_0140  short-chain dehydrogenase/reductase SDR  37.39 
 
 
261 aa  143  2e-33  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_013093  Amir_6941  short-chain dehydrogenase/reductase SDR  39.56 
 
 
259 aa  144  2e-33  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_008312  Tery_1795  short-chain dehydrogenase/reductase SDR  40.41 
 
 
264 aa  143  3e-33  Trichodesmium erythraeum IMS101  Bacteria  normal  0.711928  normal 
 
 
-
 
NC_013169  Ksed_05610  short-chain dehydrogenase of unknown substrate specificity  38.5 
 
 
296 aa  142  4e-33  Kytococcus sedentarius DSM 20547  Bacteria  normal  0.100134  normal  0.886117 
 
 
-
 
NC_013131  Caci_8914  short-chain dehydrogenase/reductase SDR  40.27 
 
 
255 aa  142  5e-33  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal  0.505504 
 
 
-
 
NC_008578  Acel_2122  short-chain dehydrogenase/reductase SDR  39.46 
 
 
249 aa  142  5e-33  Acidothermus cellulolyticus 11B  Bacteria  normal  normal  0.617745 
 
 
-
 
NC_013595  Sros_6514  short-chain dehydrogenase/reductase SDR  41.41 
 
 
250 aa  142  7e-33  Streptosporangium roseum DSM 43021  Bacteria  normal  0.757683  normal  0.645684 
 
 
-
 
NC_009565  TBFG_11577  ketoacyl reductase  39.82 
 
 
267 aa  142  7e-33  Mycobacterium tuberculosis F11  Bacteria  normal  normal 
 
 
-
 
NC_009338  Mflv_3538  short-chain dehydrogenase/reductase SDR  36.48 
 
 
259 aa  140  1.9999999999999998e-32  Mycobacterium gilvum PYR-GCK  Bacteria  normal  0.0177311  normal  0.151964 
 
 
-
 
NC_007492  Pfl01_5106  Short-chain dehydrogenase/reductase SDR  37.29 
 
 
262 aa  140  3e-32  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.311622  normal  0.753041 
 
 
-
 
NC_013947  Snas_6420  short-chain dehydrogenase/reductase SDR  40.27 
 
 
259 aa  139  3.9999999999999997e-32  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal 
 
 
-
 
NC_008541  Arth_0289  short-chain dehydrogenase/reductase SDR  37.61 
 
 
258 aa  139  3.9999999999999997e-32  Arthrobacter sp. FB24  Bacteria  normal  n/a   
 
 
-
 
NC_004578  PSPTO_0601  oxidoreductase, short chain dehydrogenase/reductase family  38.94 
 
 
258 aa  138  7.999999999999999e-32  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_013235  Namu_0089  short-chain dehydrogenase/reductase SDR  44.15 
 
 
264 aa  138  8.999999999999999e-32  Nakamurella multipartita DSM 44233  Bacteria  normal  normal 
 
 
-
 
NC_009338  Mflv_0138  short-chain dehydrogenase/reductase SDR  36.15 
 
 
273 aa  138  8.999999999999999e-32  Mycobacterium gilvum PYR-GCK  Bacteria  normal  normal 
 
 
-
 
NC_013521  Sked_35320  short-chain dehydrogenase of unknown substrate specificity  38.33 
 
 
249 aa  137  2e-31  Sanguibacter keddieii DSM 10542  Bacteria  normal  0.135035  normal  0.316469 
 
 
-
 
NC_013174  Jden_2426  short-chain dehydrogenase/reductase SDR  37.89 
 
 
269 aa  137  2e-31  Jonesia denitrificans DSM 20603  Bacteria  normal  normal  0.316114 
 
 
-
 
NC_014211  Ndas_5378  short-chain dehydrogenase/reductase SDR  41.67 
 
 
277 aa  136  3.0000000000000003e-31  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal 
 
 
-
 
NC_008146  Mmcs_4085  short-chain dehydrogenase/reductase SDR  39.13 
 
 
267 aa  135  5e-31  Mycobacterium sp. MCS  Bacteria  normal  n/a   
 
 
-
 
NC_008705  Mkms_4161  short-chain dehydrogenase/reductase SDR  39.13 
 
 
267 aa  135  5e-31  Mycobacterium sp. KMS  Bacteria  normal  0.209625  normal 
 
 
-
 
NC_013131  Caci_8408  short-chain dehydrogenase/reductase SDR  39.91 
 
 
254 aa  135  5e-31  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.485174  normal 
 
 
-
 
NC_007005  Psyr_4572  Short-chain dehydrogenase/reductase SDR  43.46 
 
 
258 aa  135  6.0000000000000005e-31  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal 
 
 
-
 
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