More than 300 homologs were found in PanDaTox collection
for query gene Bamb_4735 on replicon NC_008391
Organism: Burkholderia ambifaria AMMD



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_008391  Bamb_4735  short-chain dehydrogenase/reductase SDR  100 
 
 
262 aa  518  1e-146  Burkholderia ambifaria AMMD  Bacteria  normal  normal 
 
 
-
 
NC_010552  BamMC406_5270  short-chain dehydrogenase/reductase SDR  97.33 
 
 
262 aa  505  9.999999999999999e-143  Burkholderia ambifaria MC40-6  Bacteria  normal  normal 
 
 
-
 
NC_002947  PP_2989  short chain dehydrogenase/reductase family oxidoreductase  85.33 
 
 
264 aa  449  1e-125  Pseudomonas putida KT2440  Bacteria  normal  normal  0.0851531 
 
 
-
 
NC_009512  Pput_2703  short-chain dehydrogenase/reductase SDR  84.56 
 
 
264 aa  446  1.0000000000000001e-124  Pseudomonas putida F1  Bacteria  normal  normal 
 
 
-
 
NC_004578  PSPTO_1864  oxidoreductase, short chain dehydrogenase/reductase family  81.68 
 
 
262 aa  435  1e-121  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_007005  Psyr_3539  Short-chain dehydrogenase/reductase SDR  80.53 
 
 
262 aa  431  1e-120  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal  0.0684522 
 
 
-
 
NC_009832  Spro_3183  short-chain dehydrogenase/reductase SDR  77.65 
 
 
260 aa  407  1.0000000000000001e-112  Serratia proteamaculans 568  Bacteria  normal  normal 
 
 
-
 
NC_011071  Smal_2007  short-chain dehydrogenase/reductase SDR  79.54 
 
 
262 aa  400  9.999999999999999e-111  Stenotrophomonas maltophilia R551-3  Bacteria  normal  0.511264  normal 
 
 
-
 
NC_007492  Pfl01_2478  Short-chain dehydrogenase/reductase SDR  74.13 
 
 
262 aa  395  1e-109  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal 
 
 
-
 
NC_009436  Ent638_2278  short-chain dehydrogenase/reductase SDR  72.83 
 
 
260 aa  389  1e-107  Enterobacter sp. 638  Bacteria  normal  normal  0.161761 
 
 
-
 
NC_011663  Sbal223_2174  short-chain dehydrogenase/reductase SDR  68.11 
 
 
261 aa  359  3e-98  Shewanella baltica OS223  Bacteria  normal  0.30567  hitchhiker  0.00567391 
 
 
-
 
NC_012912  Dd1591_2059  short-chain dehydrogenase/reductase SDR  67.32 
 
 
260 aa  355  3.9999999999999996e-97  Dickeya zeae Ech1591  Bacteria  normal  n/a   
 
 
-
 
NC_012912  Dd1591_3491  short-chain dehydrogenase/reductase SDR  64.23 
 
 
287 aa  340  1e-92  Dickeya zeae Ech1591  Bacteria  normal  0.210779  n/a   
 
 
-
 
NC_008463  PA14_63890  putative short-chain dehydrogenase  58.89 
 
 
265 aa  271  6e-72  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal 
 
 
-
 
NC_009656  PSPA7_5551  putative short-chain dehydrogenase  58.89 
 
 
265 aa  269  2.9999999999999997e-71  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_009439  Pmen_1100  short-chain dehydrogenase/reductase SDR  58.98 
 
 
264 aa  265  4e-70  Pseudomonas mendocina ymp  Bacteria  normal  0.576998  normal  0.0165353 
 
 
-
 
NC_013421  Pecwa_2365  short-chain dehydrogenase/reductase SDR  51.76 
 
 
257 aa  258  6e-68  Pectobacterium wasabiae WPP163  Bacteria  normal  n/a   
 
 
-
 
NC_010338  Caul_3460  short-chain dehydrogenase/reductase SDR  55.21 
 
 
269 aa  254  1.0000000000000001e-66  Caulobacter sp. K31  Bacteria  normal  0.590645  normal 
 
 
-
 
NC_011365  Gdia_0995  short-chain dehydrogenase/reductase SDR  52.47 
 
 
267 aa  251  9.000000000000001e-66  Gluconacetobacter diazotrophicus PAl 5  Bacteria  normal  normal 
 
 
-
 
NC_010086  Bmul_4300  short-chain dehydrogenase/reductase SDR  49.41 
 
 
266 aa  249  3e-65  Burkholderia multivorans ATCC 17616  Bacteria  normal  0.498015  normal 
 
 
-
 
NC_011666  Msil_0129  short-chain dehydrogenase/reductase SDR  53.73 
 
 
271 aa  248  5e-65  Methylocella silvestris BL2  Bacteria  n/a    normal 
 
 
-
 
NC_007951  Bxe_A4474  putative short-chain dehydrogenase/reductase SDR  52.16 
 
 
270 aa  248  8e-65  Burkholderia xenovorans LB400  Bacteria  normal  hitchhiker  0.000662369 
 
 
-
 
NC_007492  Pfl01_4040  Short-chain dehydrogenase/reductase SDR  56.25 
 
 
264 aa  247  2e-64  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.128419  normal  0.923094 
 
 
-
 
NC_007974  Rmet_4523  short-chain dehydrogenase/reductase SDR  50.58 
 
 
266 aa  246  4e-64  Cupriavidus metallidurans CH34  Bacteria  normal  0.642907  decreased coverage  0.0040913 
 
 
-
 
NC_010515  Bcenmc03_3212  short-chain dehydrogenase/reductase SDR  49.8 
 
 
266 aa  243  1.9999999999999999e-63  Burkholderia cenocepacia MC0-3  Bacteria  normal  0.177624  normal 
 
 
-
 
NC_008391  Bamb_3723  short-chain dehydrogenase/reductase SDR  50.2 
 
 
266 aa  243  1.9999999999999999e-63  Burkholderia ambifaria AMMD  Bacteria  normal  0.662669  normal  0.858524 
 
 
-
 
NC_010623  Bphy_4200  short-chain dehydrogenase/reductase SDR  49.61 
 
 
271 aa  242  5e-63  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_008061  Bcen_4061  short-chain dehydrogenase/reductase SDR  49.41 
 
 
281 aa  242  6e-63  Burkholderia cenocepacia AU 1054  Bacteria  normal  0.786818  n/a   
 
 
-
 
NC_008543  Bcen2424_4305  short-chain dehydrogenase/reductase SDR  49.41 
 
 
281 aa  242  6e-63  Burkholderia cenocepacia HI2424  Bacteria  normal  normal  0.699263 
 
 
-
 
NC_007511  Bcep18194_B1706  Short-chain dehydrogenase/reductase SDR  49.8 
 
 
266 aa  240  2e-62  Burkholderia sp. 383  Bacteria  normal  0.951732  normal 
 
 
-
 
NC_011666  Msil_0380  short-chain dehydrogenase/reductase SDR  49.03 
 
 
265 aa  239  2.9999999999999997e-62  Methylocella silvestris BL2  Bacteria  n/a    normal  0.453235 
 
 
-
 
NC_010681  Bphyt_3970  short-chain dehydrogenase/reductase SDR  50.98 
 
 
270 aa  239  4e-62  Burkholderia phytofirmans PsJN  Bacteria  normal  normal 
 
 
-
 
NC_007347  Reut_A1901  Short-chain dehydrogenase/reductase SDR  52.94 
 
 
266 aa  238  1e-61  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_010552  BamMC406_4199  short-chain dehydrogenase/reductase SDR  49.02 
 
 
266 aa  235  4e-61  Burkholderia ambifaria MC40-6  Bacteria  normal  0.308915  normal  0.0922746 
 
 
-
 
NC_009720  Xaut_1294  short-chain dehydrogenase/reductase SDR  50.38 
 
 
266 aa  234  2.0000000000000002e-60  Xanthobacter autotrophicus Py2  Bacteria  normal  normal 
 
 
-
 
NC_009436  Ent638_1512  short-chain dehydrogenase/reductase SDR  49.81 
 
 
264 aa  231  7.000000000000001e-60  Enterobacter sp. 638  Bacteria  normal  normal  0.360234 
 
 
-
 
NC_009485  BBta_3264  putative oxidoreductase protein  50 
 
 
264 aa  228  5e-59  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.724633  normal 
 
 
-
 
NC_010322  PputGB1_3070  short-chain dehydrogenase/reductase SDR  48.25 
 
 
265 aa  226  3e-58  Pseudomonas putida GB-1  Bacteria  normal  0.0355963  normal 
 
 
-
 
NC_012850  Rleg_3582  short-chain dehydrogenase/reductase SDR  47.47 
 
 
265 aa  225  5.0000000000000005e-58  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.15353 
 
 
-
 
NC_011894  Mnod_1035  short-chain dehydrogenase/reductase SDR  49.03 
 
 
270 aa  224  8e-58  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.0312813  n/a   
 
 
-
 
NC_008048  Sala_0082  short-chain dehydrogenase/reductase SDR  47.47 
 
 
269 aa  223  2e-57  Sphingopyxis alaskensis RB2256  Bacteria  normal  normal 
 
 
-
 
NC_011757  Mchl_0153  short-chain dehydrogenase/reductase SDR  50.39 
 
 
262 aa  222  6e-57  Methylobacterium chloromethanicum CM4  Bacteria  normal  0.418257  normal  0.135019 
 
 
-
 
NC_007492  Pfl01_2716  Short-chain dehydrogenase/reductase SDR  46.48 
 
 
265 aa  222  6e-57  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal  0.490599 
 
 
-
 
NC_010172  Mext_0209  short-chain dehydrogenase/reductase SDR  50 
 
 
262 aa  218  1e-55  Methylobacterium extorquens PA1  Bacteria  normal  0.128983  normal 
 
 
-
 
NC_010505  Mrad2831_1275  short-chain dehydrogenase/reductase SDR  50.59 
 
 
271 aa  216  2.9999999999999998e-55  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal 
 
 
-
 
NC_009621  Smed_5531  short-chain dehydrogenase/reductase SDR  45.56 
 
 
269 aa  215  5.9999999999999996e-55  Sinorhizobium medicae WSM419  Bacteria  normal  0.356237  normal  0.14087 
 
 
-
 
NC_010725  Mpop_0718  short-chain dehydrogenase/reductase SDR  49.22 
 
 
263 aa  214  8e-55  Methylobacterium populi BJ001  Bacteria  normal  0.520585  normal 
 
 
-
 
NC_012858  Rleg_6849  short-chain dehydrogenase/reductase SDR  45.63 
 
 
269 aa  213  1.9999999999999998e-54  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.674583 
 
 
-
 
NC_011368  Rleg2_5185  short-chain dehydrogenase/reductase SDR  47.08 
 
 
285 aa  213  2.9999999999999995e-54  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal 
 
 
-
 
NC_010505  Mrad2831_4718  short-chain dehydrogenase/reductase SDR  48.82 
 
 
270 aa  211  1e-53  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal 
 
 
-
 
NC_010511  M446_3566  short-chain dehydrogenase/reductase SDR  50.76 
 
 
269 aa  208  7e-53  Methylobacterium sp. 4-46  Bacteria  normal  normal  0.138362 
 
 
-
 
NC_012850  Rleg_0887  short-chain dehydrogenase/reductase SDR  43.58 
 
 
266 aa  203  3e-51  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal 
 
 
-
 
NC_007948  Bpro_2349  short-chain dehydrogenase/reductase SDR  43.68 
 
 
266 aa  199  3.9999999999999996e-50  Polaromonas sp. JS666  Bacteria  normal  0.341044  normal 
 
 
-
 
NC_012792  Vapar_5551  short-chain dehydrogenase/reductase SDR  44.44 
 
 
266 aa  196  2.0000000000000003e-49  Variovorax paradoxus S110  Bacteria  normal  0.614615  n/a   
 
 
-
 
NC_007908  Rfer_0308  short-chain dehydrogenase/reductase SDR  43.3 
 
 
266 aa  190  2e-47  Rhodoferax ferrireducens T118  Bacteria  normal  0.130238  n/a   
 
 
-
 
NC_010338  Caul_0512  short-chain dehydrogenase/reductase SDR  45.65 
 
 
269 aa  176  2e-43  Caulobacter sp. K31  Bacteria  normal  normal 
 
 
-
 
NC_009485  BBta_5145  putative Short-chain dehydrogenase/reductase SDR  40.08 
 
 
267 aa  175  6e-43  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.645114  normal  0.0551529 
 
 
-
 
NC_010505  Mrad2831_4444  short-chain dehydrogenase/reductase SDR  51.76 
 
 
264 aa  171  9e-42  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.241971  normal 
 
 
-
 
NC_007511  Bcep18194_B0958  Short-chain dehydrogenase/reductase SDR  41.02 
 
 
263 aa  169  3e-41  Burkholderia sp. 383  Bacteria  normal  normal 
 
 
-
 
NC_013169  Ksed_05610  short-chain dehydrogenase of unknown substrate specificity  44.16 
 
 
296 aa  166  4e-40  Kytococcus sedentarius DSM 20547  Bacteria  normal  0.100134  normal  0.886117 
 
 
-
 
NC_009621  Smed_5566  short-chain dehydrogenase/reductase SDR  44.56 
 
 
199 aa  160  1e-38  Sinorhizobium medicae WSM419  Bacteria  normal  normal  0.0343056 
 
 
-
 
NC_013510  Tcur_1833  short-chain dehydrogenase/reductase SDR  42.29 
 
 
252 aa  154  2e-36  Thermomonospora curvata DSM 43183  Bacteria  normal  0.092001  n/a   
 
 
-
 
NC_010002  Daci_5779  short-chain dehydrogenase/reductase SDR  40.86 
 
 
268 aa  153  2.9999999999999998e-36  Delftia acidovorans SPH-1  Bacteria  normal  hitchhiker  0.00272439 
 
 
-
 
NC_008699  Noca_1466  short-chain dehydrogenase/reductase SDR  43.81 
 
 
253 aa  152  4e-36  Nocardioides sp. JS614  Bacteria  normal  0.0605466  n/a   
 
 
-
 
NC_009953  Sare_0129  short-chain dehydrogenase/reductase SDR  40.54 
 
 
269 aa  152  5.9999999999999996e-36  Salinispora arenicola CNS-205  Bacteria  normal  decreased coverage  0.0000288771 
 
 
-
 
NC_009718  Fnod_0523  short-chain dehydrogenase/reductase SDR  37.73 
 
 
255 aa  150  2e-35  Fervidobacterium nodosum Rt17-B1  Bacteria  normal  n/a   
 
 
-
 
NC_013093  Amir_6941  short-chain dehydrogenase/reductase SDR  40.97 
 
 
259 aa  150  3e-35  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_009380  Strop_0124  short-chain dehydrogenase/reductase SDR  38.29 
 
 
269 aa  145  6e-34  Salinispora tropica CNB-440  Bacteria  normal  normal 
 
 
-
 
NC_013235  Namu_5163  short-chain dehydrogenase/reductase SDR  38.63 
 
 
258 aa  145  8.000000000000001e-34  Nakamurella multipartita DSM 44233  Bacteria  normal  normal 
 
 
-
 
NC_009077  Mjls_0469  short-chain dehydrogenase/reductase SDR  40.89 
 
 
258 aa  144  1e-33  Mycobacterium sp. JLS  Bacteria  normal  normal 
 
 
-
 
NC_008146  Mmcs_0480  short-chain dehydrogenase/reductase SDR  40.89 
 
 
258 aa  144  1e-33  Mycobacterium sp. MCS  Bacteria  normal  n/a   
 
 
-
 
NC_008705  Mkms_0491  short-chain dehydrogenase/reductase SDR  40.89 
 
 
258 aa  144  1e-33  Mycobacterium sp. KMS  Bacteria  normal  normal  0.354983 
 
 
-
 
NC_013131  Caci_8914  short-chain dehydrogenase/reductase SDR  44.72 
 
 
255 aa  143  3e-33  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal  0.505504 
 
 
-
 
NC_009664  Krad_2466  short-chain dehydrogenase/reductase SDR  37.97 
 
 
283 aa  143  3e-33  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal 
 
 
-
 
NC_008578  Acel_2122  short-chain dehydrogenase/reductase SDR  40.18 
 
 
249 aa  143  3e-33  Acidothermus cellulolyticus 11B  Bacteria  normal  normal  0.617745 
 
 
-
 
NC_013440  Hoch_2231  short-chain dehydrogenase/reductase SDR  40.5 
 
 
263 aa  142  4e-33  Haliangium ochraceum DSM 14365  Bacteria  normal  0.19807  normal 
 
 
-
 
NC_013510  Tcur_3579  short-chain dehydrogenase/reductase SDR  45.65 
 
 
258 aa  142  5e-33  Thermomonospora curvata DSM 43183  Bacteria  normal  0.392131  n/a   
 
 
-
 
NC_008463  PA14_08440  putative short chain alcohol dehydrogenase  40.62 
 
 
266 aa  142  6e-33  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  hitchhiker  0.0000000229698 
 
 
-
 
NC_009656  PSPA7_0799  short chain dehydrogenase/reductase family oxidoreductase  40.18 
 
 
266 aa  142  8e-33  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_009664  Krad_1004  short-chain dehydrogenase/reductase SDR  39.53 
 
 
276 aa  140  1.9999999999999998e-32  Kineococcus radiotolerans SRS30216  Bacteria  normal  0.118299  decreased coverage  0.00158374 
 
 
-
 
NC_009338  Mflv_0244  short-chain dehydrogenase/reductase SDR  39.91 
 
 
258 aa  139  3.9999999999999997e-32  Mycobacterium gilvum PYR-GCK  Bacteria  normal  normal 
 
 
-
 
NC_013174  Jden_2426  short-chain dehydrogenase/reductase SDR  39.06 
 
 
269 aa  136  4e-31  Jonesia denitrificans DSM 20603  Bacteria  normal  normal  0.316114 
 
 
-
 
NC_007512  Plut_1969  short chain dehydrogenase/reductase family oxidoreductase  37.99 
 
 
260 aa  136  4e-31  Chlorobium luteolum DSM 273  Bacteria  normal  normal 
 
 
-
 
NC_009338  Mflv_3538  short-chain dehydrogenase/reductase SDR  38.56 
 
 
259 aa  135  6.0000000000000005e-31  Mycobacterium gilvum PYR-GCK  Bacteria  normal  0.0177311  normal  0.151964 
 
 
-
 
NC_013235  Namu_0089  short-chain dehydrogenase/reductase SDR  39.74 
 
 
264 aa  135  8e-31  Nakamurella multipartita DSM 44233  Bacteria  normal  normal 
 
 
-
 
NC_013093  Amir_2216  short-chain dehydrogenase/reductase SDR  43.75 
 
 
266 aa  133  1.9999999999999998e-30  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_014165  Tbis_2195  short-chain dehydrogenase/reductase SDR  37.12 
 
 
250 aa  133  3e-30  Thermobispora bispora DSM 43833  Bacteria  normal  normal  0.92313 
 
 
-
 
NC_009439  Pmen_3938  short-chain dehydrogenase/reductase SDR  37.05 
 
 
262 aa  132  3.9999999999999996e-30  Pseudomonas mendocina ymp  Bacteria  normal  normal 
 
 
-
 
NC_004578  PSPTO_0601  oxidoreductase, short chain dehydrogenase/reductase family  38.91 
 
 
258 aa  132  5e-30  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_009565  TBFG_11577  ketoacyl reductase  43.65 
 
 
267 aa  132  6.999999999999999e-30  Mycobacterium tuberculosis F11  Bacteria  normal  normal 
 
 
-
 
NC_012669  Bcav_3647  short-chain dehydrogenase/reductase SDR  39.56 
 
 
255 aa  131  1.0000000000000001e-29  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal 
 
 
-
 
NC_007005  Psyr_4572  Short-chain dehydrogenase/reductase SDR  43.01 
 
 
258 aa  131  1.0000000000000001e-29  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal 
 
 
-
 
NC_014151  Cfla_2979  short-chain dehydrogenase/reductase SDR  37.12 
 
 
269 aa  130  2.0000000000000002e-29  Cellulomonas flavigena DSM 20109  Bacteria  normal  normal 
 
 
-
 
NC_009077  Mjls_0177  short-chain dehydrogenase/reductase SDR  38.26 
 
 
262 aa  129  3e-29  Mycobacterium sp. JLS  Bacteria  normal  normal  0.721122 
 
 
-
 
NC_011886  Achl_0516  short-chain dehydrogenase/reductase SDR  38.92 
 
 
263 aa  130  3e-29  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal 
 
 
-
 
NC_013595  Sros_6514  short-chain dehydrogenase/reductase SDR  39.33 
 
 
250 aa  130  3e-29  Streptosporangium roseum DSM 43021  Bacteria  normal  0.757683  normal  0.645684 
 
 
-
 
NC_008146  Mmcs_0188  short-chain dehydrogenase/reductase SDR  37.83 
 
 
262 aa  130  3e-29  Mycobacterium sp. MCS  Bacteria  normal  n/a   
 
 
-
 
NC_008705  Mkms_0197  short-chain dehydrogenase/reductase SDR  37.83 
 
 
262 aa  130  3e-29  Mycobacterium sp. KMS  Bacteria  normal  normal 
 
 
-
 
NC_008726  Mvan_0661  short-chain dehydrogenase/reductase SDR  39.13 
 
 
258 aa  130  3e-29  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  normal  0.381329 
 
 
-
 
NC_008726  Mvan_3113  short-chain dehydrogenase/reductase SDR  39.82 
 
 
262 aa  129  3e-29  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  normal  0.999856 
 
 
-
 
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