More than 300 homologs were found in PanDaTox collection
for query gene BamMC406_4199 on replicon NC_010552
Organism: Burkholderia ambifaria MC40-6



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_010552  BamMC406_4199  short-chain dehydrogenase/reductase SDR  100 
 
 
266 aa  531  1e-150  Burkholderia ambifaria MC40-6  Bacteria  normal  0.308915  normal  0.0922746 
 
 
-
 
NC_008391  Bamb_3723  short-chain dehydrogenase/reductase SDR  98.5 
 
 
266 aa  521  1e-147  Burkholderia ambifaria AMMD  Bacteria  normal  0.662669  normal  0.858524 
 
 
-
 
NC_007511  Bcep18194_B1706  Short-chain dehydrogenase/reductase SDR  91.7 
 
 
266 aa  495  1e-139  Burkholderia sp. 383  Bacteria  normal  0.951732  normal 
 
 
-
 
NC_008061  Bcen_4061  short-chain dehydrogenase/reductase SDR  91.35 
 
 
281 aa  495  1e-139  Burkholderia cenocepacia AU 1054  Bacteria  normal  0.786818  n/a   
 
 
-
 
NC_008543  Bcen2424_4305  short-chain dehydrogenase/reductase SDR  91.35 
 
 
281 aa  495  1e-139  Burkholderia cenocepacia HI2424  Bacteria  normal  normal  0.699263 
 
 
-
 
NC_010515  Bcenmc03_3212  short-chain dehydrogenase/reductase SDR  90.98 
 
 
266 aa  493  9.999999999999999e-139  Burkholderia cenocepacia MC0-3  Bacteria  normal  0.177624  normal 
 
 
-
 
NC_010086  Bmul_4300  short-chain dehydrogenase/reductase SDR  87.22 
 
 
266 aa  474  1e-133  Burkholderia multivorans ATCC 17616  Bacteria  normal  0.498015  normal 
 
 
-
 
NC_007974  Rmet_4523  short-chain dehydrogenase/reductase SDR  79.32 
 
 
266 aa  428  1e-119  Cupriavidus metallidurans CH34  Bacteria  normal  0.642907  decreased coverage  0.0040913 
 
 
-
 
NC_007347  Reut_A1901  Short-chain dehydrogenase/reductase SDR  74.81 
 
 
266 aa  378  1e-104  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_007492  Pfl01_2716  Short-chain dehydrogenase/reductase SDR  65.53 
 
 
265 aa  355  5.999999999999999e-97  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal  0.490599 
 
 
-
 
NC_010623  Bphy_4200  short-chain dehydrogenase/reductase SDR  68.06 
 
 
271 aa  355  5.999999999999999e-97  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_012850  Rleg_3582  short-chain dehydrogenase/reductase SDR  65.66 
 
 
265 aa  352  2.9999999999999997e-96  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.15353 
 
 
-
 
NC_010322  PputGB1_3070  short-chain dehydrogenase/reductase SDR  65.02 
 
 
265 aa  349  3e-95  Pseudomonas putida GB-1  Bacteria  normal  0.0355963  normal 
 
 
-
 
NC_011666  Msil_0129  short-chain dehydrogenase/reductase SDR  66.28 
 
 
271 aa  347  9e-95  Methylocella silvestris BL2  Bacteria  n/a    normal 
 
 
-
 
NC_010681  Bphyt_3970  short-chain dehydrogenase/reductase SDR  63.98 
 
 
270 aa  336  1.9999999999999998e-91  Burkholderia phytofirmans PsJN  Bacteria  normal  normal 
 
 
-
 
NC_007951  Bxe_A4474  putative short-chain dehydrogenase/reductase SDR  62.84 
 
 
270 aa  328  6e-89  Burkholderia xenovorans LB400  Bacteria  normal  hitchhiker  0.000662369 
 
 
-
 
NC_011368  Rleg2_5185  short-chain dehydrogenase/reductase SDR  61.51 
 
 
285 aa  327  1.0000000000000001e-88  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal 
 
 
-
 
NC_011894  Mnod_1035  short-chain dehydrogenase/reductase SDR  63.77 
 
 
270 aa  325  4.0000000000000003e-88  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.0312813  n/a   
 
 
-
 
NC_009485  BBta_3264  putative oxidoreductase protein  62.6 
 
 
264 aa  322  4e-87  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.724633  normal 
 
 
-
 
NC_010511  M446_3566  short-chain dehydrogenase/reductase SDR  67.56 
 
 
269 aa  319  3.9999999999999996e-86  Methylobacterium sp. 4-46  Bacteria  normal  normal  0.138362 
 
 
-
 
NC_010725  Mpop_0718  short-chain dehydrogenase/reductase SDR  65.9 
 
 
263 aa  316  3e-85  Methylobacterium populi BJ001  Bacteria  normal  0.520585  normal 
 
 
-
 
NC_011757  Mchl_0153  short-chain dehydrogenase/reductase SDR  66.15 
 
 
262 aa  313  1.9999999999999998e-84  Methylobacterium chloromethanicum CM4  Bacteria  normal  0.418257  normal  0.135019 
 
 
-
 
NC_010172  Mext_0209  short-chain dehydrogenase/reductase SDR  65.38 
 
 
262 aa  309  2e-83  Methylobacterium extorquens PA1  Bacteria  normal  0.128983  normal 
 
 
-
 
NC_009720  Xaut_1294  short-chain dehydrogenase/reductase SDR  64.09 
 
 
266 aa  306  3e-82  Xanthobacter autotrophicus Py2  Bacteria  normal  normal 
 
 
-
 
NC_012858  Rleg_6849  short-chain dehydrogenase/reductase SDR  57.25 
 
 
269 aa  301  5.000000000000001e-81  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.674583 
 
 
-
 
NC_010505  Mrad2831_1275  short-chain dehydrogenase/reductase SDR  60.3 
 
 
271 aa  295  5e-79  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal 
 
 
-
 
NC_008048  Sala_0082  short-chain dehydrogenase/reductase SDR  58.49 
 
 
269 aa  291  6e-78  Sphingopyxis alaskensis RB2256  Bacteria  normal  normal 
 
 
-
 
NC_009621  Smed_5531  short-chain dehydrogenase/reductase SDR  55.73 
 
 
269 aa  291  1e-77  Sinorhizobium medicae WSM419  Bacteria  normal  0.356237  normal  0.14087 
 
 
-
 
NC_010505  Mrad2831_4718  short-chain dehydrogenase/reductase SDR  57.2 
 
 
270 aa  285  5.999999999999999e-76  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal 
 
 
-
 
NC_008463  PA14_63890  putative short-chain dehydrogenase  56.25 
 
 
265 aa  273  2.0000000000000002e-72  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal 
 
 
-
 
NC_011666  Msil_0380  short-chain dehydrogenase/reductase SDR  51.15 
 
 
265 aa  270  1e-71  Methylocella silvestris BL2  Bacteria  n/a    normal  0.453235 
 
 
-
 
NC_009656  PSPA7_5551  putative short-chain dehydrogenase  55.64 
 
 
265 aa  270  2e-71  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_009621  Smed_5566  short-chain dehydrogenase/reductase SDR  64.68 
 
 
199 aa  256  3e-67  Sinorhizobium medicae WSM419  Bacteria  normal  normal  0.0343056 
 
 
-
 
NC_007492  Pfl01_4040  Short-chain dehydrogenase/reductase SDR  52.14 
 
 
264 aa  249  2e-65  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.128419  normal  0.923094 
 
 
-
 
NC_011365  Gdia_0995  short-chain dehydrogenase/reductase SDR  49.62 
 
 
267 aa  247  2e-64  Gluconacetobacter diazotrophicus PAl 5  Bacteria  normal  normal 
 
 
-
 
NC_009439  Pmen_1100  short-chain dehydrogenase/reductase SDR  50.19 
 
 
264 aa  245  4.9999999999999997e-64  Pseudomonas mendocina ymp  Bacteria  normal  0.576998  normal  0.0165353 
 
 
-
 
NC_009832  Spro_3183  short-chain dehydrogenase/reductase SDR  48.64 
 
 
260 aa  244  9.999999999999999e-64  Serratia proteamaculans 568  Bacteria  normal  normal 
 
 
-
 
NC_012850  Rleg_0887  short-chain dehydrogenase/reductase SDR  47.1 
 
 
266 aa  241  1e-62  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal 
 
 
-
 
NC_002947  PP_2989  short chain dehydrogenase/reductase family oxidoreductase  49.03 
 
 
264 aa  239  2e-62  Pseudomonas putida KT2440  Bacteria  normal  normal  0.0851531 
 
 
-
 
NC_007948  Bpro_2349  short-chain dehydrogenase/reductase SDR  47.49 
 
 
266 aa  240  2e-62  Polaromonas sp. JS666  Bacteria  normal  0.341044  normal 
 
 
-
 
NC_009512  Pput_2703  short-chain dehydrogenase/reductase SDR  48.64 
 
 
264 aa  238  5e-62  Pseudomonas putida F1  Bacteria  normal  normal 
 
 
-
 
NC_010338  Caul_3460  short-chain dehydrogenase/reductase SDR  50.39 
 
 
269 aa  236  2e-61  Caulobacter sp. K31  Bacteria  normal  0.590645  normal 
 
 
-
 
NC_007908  Rfer_0308  short-chain dehydrogenase/reductase SDR  50 
 
 
266 aa  236  2e-61  Rhodoferax ferrireducens T118  Bacteria  normal  0.130238  n/a   
 
 
-
 
NC_008391  Bamb_4735  short-chain dehydrogenase/reductase SDR  49.02 
 
 
262 aa  235  4e-61  Burkholderia ambifaria AMMD  Bacteria  normal  normal 
 
 
-
 
NC_009436  Ent638_1512  short-chain dehydrogenase/reductase SDR  46.95 
 
 
264 aa  236  4e-61  Enterobacter sp. 638  Bacteria  normal  normal  0.360234 
 
 
-
 
NC_010552  BamMC406_5270  short-chain dehydrogenase/reductase SDR  48.63 
 
 
262 aa  235  5.0000000000000005e-61  Burkholderia ambifaria MC40-6  Bacteria  normal  normal 
 
 
-
 
NC_009436  Ent638_2278  short-chain dehydrogenase/reductase SDR  46.33 
 
 
260 aa  234  8e-61  Enterobacter sp. 638  Bacteria  normal  normal  0.161761 
 
 
-
 
NC_011663  Sbal223_2174  short-chain dehydrogenase/reductase SDR  46.33 
 
 
261 aa  234  2.0000000000000002e-60  Shewanella baltica OS223  Bacteria  normal  0.30567  hitchhiker  0.00567391 
 
 
-
 
NC_004578  PSPTO_1864  oxidoreductase, short chain dehydrogenase/reductase family  47.45 
 
 
262 aa  232  4.0000000000000004e-60  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_012792  Vapar_5551  short-chain dehydrogenase/reductase SDR  49.22 
 
 
266 aa  232  6e-60  Variovorax paradoxus S110  Bacteria  normal  0.614615  n/a   
 
 
-
 
NC_009485  BBta_5145  putative Short-chain dehydrogenase/reductase SDR  48.85 
 
 
267 aa  228  8e-59  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.645114  normal  0.0551529 
 
 
-
 
NC_007492  Pfl01_2478  Short-chain dehydrogenase/reductase SDR  47.86 
 
 
262 aa  228  1e-58  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal 
 
 
-
 
NC_012912  Dd1591_2059  short-chain dehydrogenase/reductase SDR  44.19 
 
 
260 aa  228  1e-58  Dickeya zeae Ech1591  Bacteria  normal  n/a   
 
 
-
 
NC_007005  Psyr_3539  Short-chain dehydrogenase/reductase SDR  44.31 
 
 
262 aa  221  9.999999999999999e-57  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal  0.0684522 
 
 
-
 
NC_012912  Dd1591_3491  short-chain dehydrogenase/reductase SDR  46.67 
 
 
287 aa  214  9.999999999999999e-55  Dickeya zeae Ech1591  Bacteria  normal  0.210779  n/a   
 
 
-
 
NC_011071  Smal_2007  short-chain dehydrogenase/reductase SDR  48.24 
 
 
262 aa  212  5.999999999999999e-54  Stenotrophomonas maltophilia R551-3  Bacteria  normal  0.511264  normal 
 
 
-
 
NC_013421  Pecwa_2365  short-chain dehydrogenase/reductase SDR  44.53 
 
 
257 aa  204  1e-51  Pectobacterium wasabiae WPP163  Bacteria  normal  n/a   
 
 
-
 
NC_010338  Caul_0512  short-chain dehydrogenase/reductase SDR  42.64 
 
 
269 aa  201  7e-51  Caulobacter sp. K31  Bacteria  normal  normal 
 
 
-
 
NC_010002  Daci_5779  short-chain dehydrogenase/reductase SDR  46.56 
 
 
268 aa  198  9e-50  Delftia acidovorans SPH-1  Bacteria  normal  hitchhiker  0.00272439 
 
 
-
 
NC_007511  Bcep18194_B0958  Short-chain dehydrogenase/reductase SDR  44.53 
 
 
263 aa  197  2.0000000000000003e-49  Burkholderia sp. 383  Bacteria  normal  normal 
 
 
-
 
NC_010505  Mrad2831_4444  short-chain dehydrogenase/reductase SDR  52.29 
 
 
264 aa  196  4.0000000000000005e-49  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.241971  normal 
 
 
-
 
NC_009664  Krad_2466  short-chain dehydrogenase/reductase SDR  43.87 
 
 
283 aa  175  6e-43  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal 
 
 
-
 
NC_013131  Caci_6716  short-chain dehydrogenase/reductase SDR  42.28 
 
 
259 aa  167  2e-40  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.543445  normal 
 
 
-
 
NC_009380  Strop_0124  short-chain dehydrogenase/reductase SDR  41.7 
 
 
269 aa  164  1.0000000000000001e-39  Salinispora tropica CNB-440  Bacteria  normal  normal 
 
 
-
 
NC_013159  Svir_38500  short-chain dehydrogenase of unknown substrate specificity  43.75 
 
 
253 aa  162  7e-39  Saccharomonospora viridis DSM 43017  Bacteria  normal  normal 
 
 
-
 
NC_013510  Tcur_3579  short-chain dehydrogenase/reductase SDR  42.41 
 
 
258 aa  160  2e-38  Thermomonospora curvata DSM 43183  Bacteria  normal  0.392131  n/a   
 
 
-
 
NC_009953  Sare_0129  short-chain dehydrogenase/reductase SDR  40.81 
 
 
269 aa  157  2e-37  Salinispora arenicola CNS-205  Bacteria  normal  decreased coverage  0.0000288771 
 
 
-
 
NC_014165  Tbis_2195  short-chain dehydrogenase/reductase SDR  40.27 
 
 
250 aa  156  4e-37  Thermobispora bispora DSM 43833  Bacteria  normal  normal  0.92313 
 
 
-
 
NC_014148  Plim_1352  short-chain dehydrogenase/reductase SDR  36.78 
 
 
271 aa  155  9e-37  Planctomyces limnophilus DSM 3776  Bacteria  normal  0.708878  n/a   
 
 
-
 
NC_013510  Tcur_1833  short-chain dehydrogenase/reductase SDR  40 
 
 
252 aa  152  7e-36  Thermomonospora curvata DSM 43183  Bacteria  normal  0.092001  n/a   
 
 
-
 
NC_008699  Noca_1466  short-chain dehydrogenase/reductase SDR  40.44 
 
 
253 aa  151  8e-36  Nocardioides sp. JS614  Bacteria  normal  0.0605466  n/a   
 
 
-
 
NC_008726  Mvan_3113  short-chain dehydrogenase/reductase SDR  40.09 
 
 
262 aa  149  3e-35  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  normal  0.999856 
 
 
-
 
NC_013161  Cyan8802_0137  short-chain dehydrogenase/reductase SDR  37.84 
 
 
261 aa  147  1.0000000000000001e-34  Cyanothece sp. PCC 8802  Bacteria  normal  hitchhiker  0.00000076045 
 
 
-
 
NC_009565  TBFG_11577  ketoacyl reductase  40.71 
 
 
267 aa  147  2.0000000000000003e-34  Mycobacterium tuberculosis F11  Bacteria  normal  normal 
 
 
-
 
NC_008312  Tery_1795  short-chain dehydrogenase/reductase SDR  38.74 
 
 
264 aa  146  4.0000000000000006e-34  Trichodesmium erythraeum IMS101  Bacteria  normal  0.711928  normal 
 
 
-
 
NC_013093  Amir_6941  short-chain dehydrogenase/reductase SDR  39.56 
 
 
259 aa  145  5e-34  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_012669  Bcav_3647  short-chain dehydrogenase/reductase SDR  38.93 
 
 
255 aa  145  8.000000000000001e-34  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal 
 
 
-
 
NC_009718  Fnod_0523  short-chain dehydrogenase/reductase SDR  36.77 
 
 
255 aa  144  1e-33  Fervidobacterium nodosum Rt17-B1  Bacteria  normal  n/a   
 
 
-
 
NC_011726  PCC8801_0140  short-chain dehydrogenase/reductase SDR  37.39 
 
 
261 aa  144  1e-33  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_014151  Cfla_2979  short-chain dehydrogenase/reductase SDR  39.3 
 
 
269 aa  144  2e-33  Cellulomonas flavigena DSM 20109  Bacteria  normal  normal 
 
 
-
 
NC_013131  Caci_8914  short-chain dehydrogenase/reductase SDR  40.27 
 
 
255 aa  144  2e-33  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal  0.505504 
 
 
-
 
NC_008578  Acel_2122  short-chain dehydrogenase/reductase SDR  39.91 
 
 
249 aa  143  3e-33  Acidothermus cellulolyticus 11B  Bacteria  normal  normal  0.617745 
 
 
-
 
NC_013595  Sros_6514  short-chain dehydrogenase/reductase SDR  40.97 
 
 
250 aa  142  4e-33  Streptosporangium roseum DSM 43021  Bacteria  normal  0.757683  normal  0.645684 
 
 
-
 
NC_008463  PA14_08440  putative short chain alcohol dehydrogenase  38.22 
 
 
266 aa  142  6e-33  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  hitchhiker  0.0000000229698 
 
 
-
 
NC_013169  Ksed_05610  short-chain dehydrogenase of unknown substrate specificity  38.5 
 
 
296 aa  142  6e-33  Kytococcus sedentarius DSM 20547  Bacteria  normal  0.100134  normal  0.886117 
 
 
-
 
NC_009338  Mflv_0138  short-chain dehydrogenase/reductase SDR  36.54 
 
 
273 aa  140  1.9999999999999998e-32  Mycobacterium gilvum PYR-GCK  Bacteria  normal  normal 
 
 
-
 
NC_013947  Snas_6420  short-chain dehydrogenase/reductase SDR  40.71 
 
 
259 aa  140  3e-32  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal 
 
 
-
 
NC_013174  Jden_2426  short-chain dehydrogenase/reductase SDR  37.89 
 
 
269 aa  139  3.9999999999999997e-32  Jonesia denitrificans DSM 20603  Bacteria  normal  normal  0.316114 
 
 
-
 
NC_013517  Sterm_2330  short-chain dehydrogenase/reductase SDR  38.57 
 
 
257 aa  139  4.999999999999999e-32  Sebaldella termitidis ATCC 33386  Bacteria  hitchhiker  0.000620196  n/a   
 
 
-
 
NC_009656  PSPA7_0799  short chain dehydrogenase/reductase family oxidoreductase  38.22 
 
 
266 aa  139  4.999999999999999e-32  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_008541  Arth_0289  short-chain dehydrogenase/reductase SDR  35 
 
 
258 aa  138  7.999999999999999e-32  Arthrobacter sp. FB24  Bacteria  normal  n/a   
 
 
-
 
NC_014211  Ndas_5378  short-chain dehydrogenase/reductase SDR  41.67 
 
 
277 aa  137  2e-31  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal 
 
 
-
 
NC_009338  Mflv_3538  short-chain dehydrogenase/reductase SDR  36.07 
 
 
259 aa  137  2e-31  Mycobacterium gilvum PYR-GCK  Bacteria  normal  0.0177311  normal  0.151964 
 
 
-
 
NC_013172  Bfae_25790  short-chain dehydrogenase of unknown substrate specificity  37.89 
 
 
282 aa  137  2e-31  Brachybacterium faecium DSM 4810  Bacteria  normal  n/a   
 
 
-
 
NC_013235  Namu_0089  short-chain dehydrogenase/reductase SDR  44.15 
 
 
264 aa  137  2e-31  Nakamurella multipartita DSM 44233  Bacteria  normal  normal 
 
 
-
 
NC_007413  Ava_1011  Short-chain dehydrogenase/reductase SDR  36.68 
 
 
258 aa  136  3.0000000000000003e-31  Anabaena variabilis ATCC 29413  Bacteria  normal  0.968961  hitchhiker  0.00922057 
 
 
-
 
NC_013131  Caci_8408  short-chain dehydrogenase/reductase SDR  39.91 
 
 
254 aa  136  3.0000000000000003e-31  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.485174  normal 
 
 
-
 
NC_013521  Sked_35320  short-chain dehydrogenase of unknown substrate specificity  38.33 
 
 
249 aa  136  4e-31  Sanguibacter keddieii DSM 10542  Bacteria  normal  0.135035  normal  0.316469 
 
 
-
 
NC_007777  Francci3_0351  short-chain dehydrogenase/reductase SDR  44.62 
 
 
291 aa  136  4e-31  Frankia sp. CcI3  Bacteria  normal  normal 
 
 
-
 
NC_013510  Tcur_2692  short-chain dehydrogenase/reductase SDR  38.24 
 
 
267 aa  136  4e-31  Thermomonospora curvata DSM 43183  Bacteria  decreased coverage  0.0000430049  n/a   
 
 
-
 
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