More than 300 homologs were found in PanDaTox collection
for query gene Rfer_0308 on replicon NC_007908
Organism: Rhodoferax ferrireducens T118



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_007908  Rfer_0308  short-chain dehydrogenase/reductase SDR  100 
 
 
266 aa  535  1e-151  Rhodoferax ferrireducens T118  Bacteria  normal  0.130238  n/a   
 
 
-
 
NC_007948  Bpro_2349  short-chain dehydrogenase/reductase SDR  87.17 
 
 
266 aa  481  1e-135  Polaromonas sp. JS666  Bacteria  normal  0.341044  normal 
 
 
-
 
NC_012792  Vapar_5551  short-chain dehydrogenase/reductase SDR  83.08 
 
 
266 aa  458  9.999999999999999e-129  Variovorax paradoxus S110  Bacteria  normal  0.614615  n/a   
 
 
-
 
NC_012850  Rleg_0887  short-chain dehydrogenase/reductase SDR  67.05 
 
 
266 aa  365  1e-100  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal 
 
 
-
 
NC_009436  Ent638_1512  short-chain dehydrogenase/reductase SDR  54.33 
 
 
264 aa  278  5e-74  Enterobacter sp. 638  Bacteria  normal  normal  0.360234 
 
 
-
 
NC_011666  Msil_0129  short-chain dehydrogenase/reductase SDR  50.94 
 
 
271 aa  253  2.0000000000000002e-66  Methylocella silvestris BL2  Bacteria  n/a    normal 
 
 
-
 
NC_012850  Rleg_3582  short-chain dehydrogenase/reductase SDR  50.58 
 
 
265 aa  249  4e-65  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.15353 
 
 
-
 
NC_009485  BBta_3264  putative oxidoreductase protein  48.86 
 
 
264 aa  248  5e-65  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.724633  normal 
 
 
-
 
NC_010623  Bphy_4200  short-chain dehydrogenase/reductase SDR  49.26 
 
 
271 aa  247  1e-64  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_010515  Bcenmc03_3212  short-chain dehydrogenase/reductase SDR  51.75 
 
 
266 aa  246  2e-64  Burkholderia cenocepacia MC0-3  Bacteria  normal  0.177624  normal 
 
 
-
 
NC_008061  Bcen_4061  short-chain dehydrogenase/reductase SDR  51.36 
 
 
281 aa  246  3e-64  Burkholderia cenocepacia AU 1054  Bacteria  normal  0.786818  n/a   
 
 
-
 
NC_008543  Bcen2424_4305  short-chain dehydrogenase/reductase SDR  51.36 
 
 
281 aa  246  3e-64  Burkholderia cenocepacia HI2424  Bacteria  normal  normal  0.699263 
 
 
-
 
NC_011894  Mnod_1035  short-chain dehydrogenase/reductase SDR  48.68 
 
 
270 aa  244  9.999999999999999e-64  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.0312813  n/a   
 
 
-
 
NC_011368  Rleg2_5185  short-chain dehydrogenase/reductase SDR  48.46 
 
 
285 aa  244  9.999999999999999e-64  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal 
 
 
-
 
NC_007951  Bxe_A4474  putative short-chain dehydrogenase/reductase SDR  49.81 
 
 
270 aa  243  3e-63  Burkholderia xenovorans LB400  Bacteria  normal  hitchhiker  0.000662369 
 
 
-
 
NC_007511  Bcep18194_B1706  Short-chain dehydrogenase/reductase SDR  50.19 
 
 
266 aa  240  2e-62  Burkholderia sp. 383  Bacteria  normal  0.951732  normal 
 
 
-
 
NC_009485  BBta_5145  putative Short-chain dehydrogenase/reductase SDR  50 
 
 
267 aa  239  2.9999999999999997e-62  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.645114  normal  0.0551529 
 
 
-
 
NC_008391  Bamb_3723  short-chain dehydrogenase/reductase SDR  50.39 
 
 
266 aa  239  2.9999999999999997e-62  Burkholderia ambifaria AMMD  Bacteria  normal  0.662669  normal  0.858524 
 
 
-
 
NC_011757  Mchl_0153  short-chain dehydrogenase/reductase SDR  50.97 
 
 
262 aa  239  2.9999999999999997e-62  Methylobacterium chloromethanicum CM4  Bacteria  normal  0.418257  normal  0.135019 
 
 
-
 
NC_010552  BamMC406_4199  short-chain dehydrogenase/reductase SDR  50 
 
 
266 aa  236  2e-61  Burkholderia ambifaria MC40-6  Bacteria  normal  0.308915  normal  0.0922746 
 
 
-
 
NC_010681  Bphyt_3970  short-chain dehydrogenase/reductase SDR  47.74 
 
 
270 aa  236  3e-61  Burkholderia phytofirmans PsJN  Bacteria  normal  normal 
 
 
-
 
NC_010172  Mext_0209  short-chain dehydrogenase/reductase SDR  50.97 
 
 
262 aa  236  3e-61  Methylobacterium extorquens PA1  Bacteria  normal  0.128983  normal 
 
 
-
 
NC_007974  Rmet_4523  short-chain dehydrogenase/reductase SDR  47.86 
 
 
266 aa  233  2.0000000000000002e-60  Cupriavidus metallidurans CH34  Bacteria  normal  0.642907  decreased coverage  0.0040913 
 
 
-
 
NC_012858  Rleg_6849  short-chain dehydrogenase/reductase SDR  47.73 
 
 
269 aa  232  4.0000000000000004e-60  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.674583 
 
 
-
 
NC_010725  Mpop_0718  short-chain dehydrogenase/reductase SDR  50.19 
 
 
263 aa  232  5e-60  Methylobacterium populi BJ001  Bacteria  normal  0.520585  normal 
 
 
-
 
NC_010505  Mrad2831_4718  short-chain dehydrogenase/reductase SDR  48.3 
 
 
270 aa  230  2e-59  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal 
 
 
-
 
NC_010086  Bmul_4300  short-chain dehydrogenase/reductase SDR  46.69 
 
 
266 aa  229  3e-59  Burkholderia multivorans ATCC 17616  Bacteria  normal  0.498015  normal 
 
 
-
 
NC_009621  Smed_5531  short-chain dehydrogenase/reductase SDR  46.33 
 
 
269 aa  227  1e-58  Sinorhizobium medicae WSM419  Bacteria  normal  0.356237  normal  0.14087 
 
 
-
 
NC_009720  Xaut_1294  short-chain dehydrogenase/reductase SDR  47.88 
 
 
266 aa  222  4.9999999999999996e-57  Xanthobacter autotrophicus Py2  Bacteria  normal  normal 
 
 
-
 
NC_008048  Sala_0082  short-chain dehydrogenase/reductase SDR  47.31 
 
 
269 aa  221  8e-57  Sphingopyxis alaskensis RB2256  Bacteria  normal  normal 
 
 
-
 
NC_010322  PputGB1_3070  short-chain dehydrogenase/reductase SDR  43.24 
 
 
265 aa  219  3e-56  Pseudomonas putida GB-1  Bacteria  normal  0.0355963  normal 
 
 
-
 
NC_011365  Gdia_0995  short-chain dehydrogenase/reductase SDR  46.54 
 
 
267 aa  216  2e-55  Gluconacetobacter diazotrophicus PAl 5  Bacteria  normal  normal 
 
 
-
 
NC_010338  Caul_0512  short-chain dehydrogenase/reductase SDR  43.45 
 
 
269 aa  217  2e-55  Caulobacter sp. K31  Bacteria  normal  normal 
 
 
-
 
NC_007347  Reut_A1901  Short-chain dehydrogenase/reductase SDR  46.56 
 
 
266 aa  214  9e-55  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_008463  PA14_63890  putative short-chain dehydrogenase  45.63 
 
 
265 aa  214  9.999999999999999e-55  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal 
 
 
-
 
NC_011666  Msil_0380  short-chain dehydrogenase/reductase SDR  45.59 
 
 
265 aa  213  1.9999999999999998e-54  Methylocella silvestris BL2  Bacteria  n/a    normal  0.453235 
 
 
-
 
NC_007492  Pfl01_2716  Short-chain dehydrogenase/reductase SDR  40.31 
 
 
265 aa  210  1e-53  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal  0.490599 
 
 
-
 
NC_009656  PSPA7_5551  putative short-chain dehydrogenase  45.25 
 
 
265 aa  209  4e-53  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_007492  Pfl01_4040  Short-chain dehydrogenase/reductase SDR  46.59 
 
 
264 aa  207  1e-52  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.128419  normal  0.923094 
 
 
-
 
NC_010511  M446_3566  short-chain dehydrogenase/reductase SDR  48.09 
 
 
269 aa  207  2e-52  Methylobacterium sp. 4-46  Bacteria  normal  normal  0.138362 
 
 
-
 
NC_010505  Mrad2831_1275  short-chain dehydrogenase/reductase SDR  46.15 
 
 
271 aa  205  6e-52  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal 
 
 
-
 
NC_010002  Daci_5779  short-chain dehydrogenase/reductase SDR  44.79 
 
 
268 aa  202  4e-51  Delftia acidovorans SPH-1  Bacteria  normal  hitchhiker  0.00272439 
 
 
-
 
NC_009832  Spro_3183  short-chain dehydrogenase/reductase SDR  42.42 
 
 
260 aa  202  5e-51  Serratia proteamaculans 568  Bacteria  normal  normal 
 
 
-
 
NC_012912  Dd1591_2059  short-chain dehydrogenase/reductase SDR  40.94 
 
 
260 aa  202  5e-51  Dickeya zeae Ech1591  Bacteria  normal  n/a   
 
 
-
 
NC_011663  Sbal223_2174  short-chain dehydrogenase/reductase SDR  42.13 
 
 
261 aa  202  6e-51  Shewanella baltica OS223  Bacteria  normal  0.30567  hitchhiker  0.00567391 
 
 
-
 
NC_009439  Pmen_1100  short-chain dehydrogenase/reductase SDR  43.94 
 
 
264 aa  198  9e-50  Pseudomonas mendocina ymp  Bacteria  normal  0.576998  normal  0.0165353 
 
 
-
 
NC_007005  Psyr_3539  Short-chain dehydrogenase/reductase SDR  42.42 
 
 
262 aa  195  5.000000000000001e-49  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal  0.0684522 
 
 
-
 
NC_010338  Caul_3460  short-chain dehydrogenase/reductase SDR  43.45 
 
 
269 aa  195  6e-49  Caulobacter sp. K31  Bacteria  normal  0.590645  normal 
 
 
-
 
NC_009436  Ent638_2278  short-chain dehydrogenase/reductase SDR  40.93 
 
 
260 aa  194  1e-48  Enterobacter sp. 638  Bacteria  normal  normal  0.161761 
 
 
-
 
NC_004578  PSPTO_1864  oxidoreductase, short chain dehydrogenase/reductase family  43.31 
 
 
262 aa  192  5e-48  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_010552  BamMC406_5270  short-chain dehydrogenase/reductase SDR  43.53 
 
 
262 aa  191  1e-47  Burkholderia ambifaria MC40-6  Bacteria  normal  normal 
 
 
-
 
NC_008391  Bamb_4735  short-chain dehydrogenase/reductase SDR  43.3 
 
 
262 aa  190  2e-47  Burkholderia ambifaria AMMD  Bacteria  normal  normal 
 
 
-
 
NC_007492  Pfl01_2478  Short-chain dehydrogenase/reductase SDR  41.92 
 
 
262 aa  187  1e-46  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal 
 
 
-
 
NC_009512  Pput_2703  short-chain dehydrogenase/reductase SDR  41.92 
 
 
264 aa  186  4e-46  Pseudomonas putida F1  Bacteria  normal  normal 
 
 
-
 
NC_002947  PP_2989  short chain dehydrogenase/reductase family oxidoreductase  41.92 
 
 
264 aa  185  6e-46  Pseudomonas putida KT2440  Bacteria  normal  normal  0.0851531 
 
 
-
 
NC_007511  Bcep18194_B0958  Short-chain dehydrogenase/reductase SDR  40.93 
 
 
263 aa  185  7e-46  Burkholderia sp. 383  Bacteria  normal  normal 
 
 
-
 
NC_009664  Krad_2466  short-chain dehydrogenase/reductase SDR  43.23 
 
 
283 aa  179  4.999999999999999e-44  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal 
 
 
-
 
NC_009621  Smed_5566  short-chain dehydrogenase/reductase SDR  46.43 
 
 
199 aa  179  5.999999999999999e-44  Sinorhizobium medicae WSM419  Bacteria  normal  normal  0.0343056 
 
 
-
 
NC_012912  Dd1591_3491  short-chain dehydrogenase/reductase SDR  40.53 
 
 
287 aa  174  9.999999999999999e-43  Dickeya zeae Ech1591  Bacteria  normal  0.210779  n/a   
 
 
-
 
NC_013421  Pecwa_2365  short-chain dehydrogenase/reductase SDR  40.94 
 
 
257 aa  173  2.9999999999999996e-42  Pectobacterium wasabiae WPP163  Bacteria  normal  n/a   
 
 
-
 
NC_011071  Smal_2007  short-chain dehydrogenase/reductase SDR  41.54 
 
 
262 aa  170  2e-41  Stenotrophomonas maltophilia R551-3  Bacteria  normal  0.511264  normal 
 
 
-
 
NC_013093  Amir_6941  short-chain dehydrogenase/reductase SDR  38.43 
 
 
259 aa  149  7e-35  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_013131  Caci_6716  short-chain dehydrogenase/reductase SDR  37.26 
 
 
259 aa  145  5e-34  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.543445  normal 
 
 
-
 
NC_009338  Mflv_3538  short-chain dehydrogenase/reductase SDR  38.31 
 
 
259 aa  144  2e-33  Mycobacterium gilvum PYR-GCK  Bacteria  normal  0.0177311  normal  0.151964 
 
 
-
 
NC_014148  Plim_1352  short-chain dehydrogenase/reductase SDR  38.12 
 
 
271 aa  144  2e-33  Planctomyces limnophilus DSM 3776  Bacteria  normal  0.708878  n/a   
 
 
-
 
NC_010505  Mrad2831_4444  short-chain dehydrogenase/reductase SDR  43.97 
 
 
264 aa  143  3e-33  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.241971  normal 
 
 
-
 
NC_013159  Svir_38500  short-chain dehydrogenase of unknown substrate specificity  39.11 
 
 
253 aa  138  1e-31  Saccharomonospora viridis DSM 43017  Bacteria  normal  normal 
 
 
-
 
NC_007777  Francci3_0351  short-chain dehydrogenase/reductase SDR  35.5 
 
 
291 aa  137  2e-31  Frankia sp. CcI3  Bacteria  normal  normal 
 
 
-
 
NC_013440  Hoch_2231  short-chain dehydrogenase/reductase SDR  41.03 
 
 
263 aa  136  4e-31  Haliangium ochraceum DSM 14365  Bacteria  normal  0.19807  normal 
 
 
-
 
NC_013510  Tcur_3579  short-chain dehydrogenase/reductase SDR  39.63 
 
 
258 aa  134  1.9999999999999998e-30  Thermomonospora curvata DSM 43183  Bacteria  normal  0.392131  n/a   
 
 
-
 
NC_008726  Mvan_3113  short-chain dehydrogenase/reductase SDR  35.32 
 
 
262 aa  133  3e-30  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  normal  0.999856 
 
 
-
 
NC_009380  Strop_0124  short-chain dehydrogenase/reductase SDR  33.91 
 
 
269 aa  133  3.9999999999999996e-30  Salinispora tropica CNB-440  Bacteria  normal  normal 
 
 
-
 
NC_009953  Sare_0129  short-chain dehydrogenase/reductase SDR  33.91 
 
 
269 aa  132  3.9999999999999996e-30  Salinispora arenicola CNS-205  Bacteria  normal  decreased coverage  0.0000288771 
 
 
-
 
NC_008726  Mvan_3324  short-chain dehydrogenase/reductase SDR  38.91 
 
 
269 aa  132  6.999999999999999e-30  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  normal  0.377978 
 
 
-
 
NC_007413  Ava_1572  Short-chain dehydrogenase/reductase SDR  34.32 
 
 
263 aa  131  1.0000000000000001e-29  Anabaena variabilis ATCC 29413  Bacteria  normal  normal  0.577459 
 
 
-
 
NC_008146  Mmcs_0188  short-chain dehydrogenase/reductase SDR  37.89 
 
 
262 aa  131  1.0000000000000001e-29  Mycobacterium sp. MCS  Bacteria  normal  n/a   
 
 
-
 
NC_008705  Mkms_0197  short-chain dehydrogenase/reductase SDR  37.89 
 
 
262 aa  131  1.0000000000000001e-29  Mycobacterium sp. KMS  Bacteria  normal  normal 
 
 
-
 
NC_009077  Mjls_4315  short-chain dehydrogenase/reductase SDR  41.12 
 
 
267 aa  130  2.0000000000000002e-29  Mycobacterium sp. JLS  Bacteria  normal  normal  0.294207 
 
 
-
 
NC_009921  Franean1_6469  short-chain dehydrogenase/reductase SDR  34.87 
 
 
263 aa  129  3e-29  Frankia sp. EAN1pec  Bacteria  normal  normal  0.0477636 
 
 
-
 
NC_009077  Mjls_0177  short-chain dehydrogenase/reductase SDR  37.89 
 
 
262 aa  130  3e-29  Mycobacterium sp. JLS  Bacteria  normal  normal  0.721122 
 
 
-
 
NC_008146  Mmcs_4085  short-chain dehydrogenase/reductase SDR  41.41 
 
 
267 aa  128  8.000000000000001e-29  Mycobacterium sp. MCS  Bacteria  normal  n/a   
 
 
-
 
NC_008705  Mkms_4161  short-chain dehydrogenase/reductase SDR  41.41 
 
 
267 aa  128  8.000000000000001e-29  Mycobacterium sp. KMS  Bacteria  normal  0.209625  normal 
 
 
-
 
NC_006369  lpl1378  hypothetical protein  32.48 
 
 
259 aa  128  1.0000000000000001e-28  Legionella pneumophila str. Lens  Bacteria  n/a    n/a   
 
 
-
 
NC_014211  Ndas_5378  short-chain dehydrogenase/reductase SDR  35.65 
 
 
277 aa  127  1.0000000000000001e-28  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal 
 
 
-
 
NC_009338  Mflv_0138  short-chain dehydrogenase/reductase SDR  35.17 
 
 
273 aa  127  1.0000000000000001e-28  Mycobacterium gilvum PYR-GCK  Bacteria  normal  normal 
 
 
-
 
NC_013510  Tcur_2692  short-chain dehydrogenase/reductase SDR  40.61 
 
 
267 aa  127  2.0000000000000002e-28  Thermomonospora curvata DSM 43183  Bacteria  decreased coverage  0.0000430049  n/a   
 
 
-
 
NC_008312  Tery_1795  short-chain dehydrogenase/reductase SDR  36.65 
 
 
264 aa  127  2.0000000000000002e-28  Trichodesmium erythraeum IMS101  Bacteria  normal  0.711928  normal 
 
 
-
 
NC_013169  Ksed_05610  short-chain dehydrogenase of unknown substrate specificity  36.36 
 
 
296 aa  127  3e-28  Kytococcus sedentarius DSM 20547  Bacteria  normal  0.100134  normal  0.886117 
 
 
-
 
NC_006368  lpp1382  hypothetical protein  31.62 
 
 
259 aa  127  3e-28  Legionella pneumophila str. Paris  Bacteria  n/a    n/a   
 
 
-
 
NC_013235  Namu_0089  short-chain dehydrogenase/reductase SDR  37.87 
 
 
264 aa  126  3e-28  Nakamurella multipartita DSM 44233  Bacteria  normal  normal 
 
 
-
 
NC_008262  CPR_0344  3-oxoacyl-[acyl-carrier protein] reductase  29.54 
 
 
265 aa  126  3e-28  Clostridium perfringens SM101  Bacteria  normal  n/a   
 
 
-
 
NC_014165  Tbis_2195  short-chain dehydrogenase/reductase SDR  34.07 
 
 
250 aa  126  4.0000000000000003e-28  Thermobispora bispora DSM 43833  Bacteria  normal  normal  0.92313 
 
 
-
 
NC_013441  Gbro_2014  short-chain dehydrogenase/reductase SDR  40.84 
 
 
268 aa  125  5e-28  Gordonia bronchialis DSM 43247  Bacteria  normal  0.700313  n/a   
 
 
-
 
NC_007413  Ava_1011  Short-chain dehydrogenase/reductase SDR  33.64 
 
 
258 aa  125  7e-28  Anabaena variabilis ATCC 29413  Bacteria  normal  0.968961  hitchhiker  0.00922057 
 
 
-
 
NC_008261  CPF_0353  short chain dehydrogenase/reductase family oxidoreductase  29.11 
 
 
265 aa  125  7e-28  Clostridium perfringens ATCC 13124  Bacteria  normal  0.45647  n/a   
 
 
-
 
NC_010338  Caul_0159  short-chain dehydrogenase/reductase SDR  39.21 
 
 
249 aa  125  8.000000000000001e-28  Caulobacter sp. K31  Bacteria  normal  0.410897  normal  0.168063 
 
 
-
 
NC_009565  TBFG_11577  ketoacyl reductase  33.89 
 
 
267 aa  124  1e-27  Mycobacterium tuberculosis F11  Bacteria  normal  normal 
 
 
-
 
NC_013132  Cpin_4109  short-chain dehydrogenase/reductase SDR  35.53 
 
 
269 aa  124  1e-27  Chitinophaga pinensis DSM 2588  Bacteria  normal  hitchhiker  0.00421935 
 
 
-
 
NC_013730  Slin_2448  short-chain dehydrogenase/reductase SDR  37.43 
 
 
257 aa  124  2e-27  Spirosoma linguale DSM 74  Bacteria  normal  normal 
 
 
-
 
NC_013517  Sterm_2330  short-chain dehydrogenase/reductase SDR  38.66 
 
 
257 aa  123  3e-27  Sebaldella termitidis ATCC 33386  Bacteria  hitchhiker  0.000620196  n/a   
 
 
-
 
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