More than 300 homologs were found in PanDaTox collection
for query gene Pfl01_4040 on replicon NC_007492
Organism: Pseudomonas fluorescens Pf0-1



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_007492  Pfl01_4040  Short-chain dehydrogenase/reductase SDR  100 
 
 
264 aa  528  1e-149  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.128419  normal  0.923094 
 
 
-
 
NC_009656  PSPA7_5551  putative short-chain dehydrogenase  67.3 
 
 
265 aa  351  5.9999999999999994e-96  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_009439  Pmen_1100  short-chain dehydrogenase/reductase SDR  68.18 
 
 
264 aa  344  8.999999999999999e-94  Pseudomonas mendocina ymp  Bacteria  normal  0.576998  normal  0.0165353 
 
 
-
 
NC_008463  PA14_63890  putative short-chain dehydrogenase  65.02 
 
 
265 aa  338  5e-92  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal 
 
 
-
 
NC_011666  Msil_0380  short-chain dehydrogenase/reductase SDR  60.92 
 
 
265 aa  321  8e-87  Methylocella silvestris BL2  Bacteria  n/a    normal  0.453235 
 
 
-
 
NC_007951  Bxe_A4474  putative short-chain dehydrogenase/reductase SDR  57.79 
 
 
270 aa  304  1.0000000000000001e-81  Burkholderia xenovorans LB400  Bacteria  normal  hitchhiker  0.000662369 
 
 
-
 
NC_010681  Bphyt_3970  short-chain dehydrogenase/reductase SDR  56.65 
 
 
270 aa  298  7e-80  Burkholderia phytofirmans PsJN  Bacteria  normal  normal 
 
 
-
 
NC_010623  Bphy_4200  short-chain dehydrogenase/reductase SDR  53.53 
 
 
271 aa  283  1.0000000000000001e-75  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_008391  Bamb_4735  short-chain dehydrogenase/reductase SDR  56.25 
 
 
262 aa  272  4.0000000000000004e-72  Burkholderia ambifaria AMMD  Bacteria  normal  normal 
 
 
-
 
NC_011666  Msil_0129  short-chain dehydrogenase/reductase SDR  53.03 
 
 
271 aa  272  5.000000000000001e-72  Methylocella silvestris BL2  Bacteria  n/a    normal 
 
 
-
 
NC_007511  Bcep18194_B1706  Short-chain dehydrogenase/reductase SDR  52.14 
 
 
266 aa  270  2e-71  Burkholderia sp. 383  Bacteria  normal  0.951732  normal 
 
 
-
 
NC_008061  Bcen_4061  short-chain dehydrogenase/reductase SDR  52.14 
 
 
281 aa  269  2.9999999999999997e-71  Burkholderia cenocepacia AU 1054  Bacteria  normal  0.786818  n/a   
 
 
-
 
NC_008543  Bcen2424_4305  short-chain dehydrogenase/reductase SDR  52.14 
 
 
281 aa  269  2.9999999999999997e-71  Burkholderia cenocepacia HI2424  Bacteria  normal  normal  0.699263 
 
 
-
 
NC_008391  Bamb_3723  short-chain dehydrogenase/reductase SDR  52.53 
 
 
266 aa  268  5e-71  Burkholderia ambifaria AMMD  Bacteria  normal  0.662669  normal  0.858524 
 
 
-
 
NC_010552  BamMC406_4199  short-chain dehydrogenase/reductase SDR  52.14 
 
 
266 aa  268  8.999999999999999e-71  Burkholderia ambifaria MC40-6  Bacteria  normal  0.308915  normal  0.0922746 
 
 
-
 
NC_008048  Sala_0082  short-chain dehydrogenase/reductase SDR  52.87 
 
 
269 aa  268  8.999999999999999e-71  Sphingopyxis alaskensis RB2256  Bacteria  normal  normal 
 
 
-
 
NC_010515  Bcenmc03_3212  short-chain dehydrogenase/reductase SDR  52.14 
 
 
266 aa  268  1e-70  Burkholderia cenocepacia MC0-3  Bacteria  normal  0.177624  normal 
 
 
-
 
NC_010552  BamMC406_5270  short-chain dehydrogenase/reductase SDR  55.08 
 
 
262 aa  265  5.999999999999999e-70  Burkholderia ambifaria MC40-6  Bacteria  normal  normal 
 
 
-
 
NC_011894  Mnod_1035  short-chain dehydrogenase/reductase SDR  52.09 
 
 
270 aa  264  1e-69  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.0312813  n/a   
 
 
-
 
NC_012850  Rleg_3582  short-chain dehydrogenase/reductase SDR  53.1 
 
 
265 aa  263  3e-69  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.15353 
 
 
-
 
NC_009485  BBta_3264  putative oxidoreductase protein  50.77 
 
 
264 aa  262  4.999999999999999e-69  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.724633  normal 
 
 
-
 
NC_013421  Pecwa_2365  short-chain dehydrogenase/reductase SDR  54.51 
 
 
257 aa  260  2e-68  Pectobacterium wasabiae WPP163  Bacteria  normal  n/a   
 
 
-
 
NC_009832  Spro_3183  short-chain dehydrogenase/reductase SDR  52.12 
 
 
260 aa  259  5.0000000000000005e-68  Serratia proteamaculans 568  Bacteria  normal  normal 
 
 
-
 
NC_009621  Smed_5531  short-chain dehydrogenase/reductase SDR  49.81 
 
 
269 aa  256  4e-67  Sinorhizobium medicae WSM419  Bacteria  normal  0.356237  normal  0.14087 
 
 
-
 
NC_010086  Bmul_4300  short-chain dehydrogenase/reductase SDR  50.97 
 
 
266 aa  256  4e-67  Burkholderia multivorans ATCC 17616  Bacteria  normal  0.498015  normal 
 
 
-
 
NC_007347  Reut_A1901  Short-chain dehydrogenase/reductase SDR  53.61 
 
 
266 aa  254  8e-67  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_009436  Ent638_2278  short-chain dehydrogenase/reductase SDR  50.19 
 
 
260 aa  254  1.0000000000000001e-66  Enterobacter sp. 638  Bacteria  normal  normal  0.161761 
 
 
-
 
NC_007005  Psyr_3539  Short-chain dehydrogenase/reductase SDR  51.14 
 
 
262 aa  253  2.0000000000000002e-66  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal  0.0684522 
 
 
-
 
NC_010338  Caul_3460  short-chain dehydrogenase/reductase SDR  51.7 
 
 
269 aa  253  2.0000000000000002e-66  Caulobacter sp. K31  Bacteria  normal  0.590645  normal 
 
 
-
 
NC_010725  Mpop_0718  short-chain dehydrogenase/reductase SDR  53.67 
 
 
263 aa  252  4.0000000000000004e-66  Methylobacterium populi BJ001  Bacteria  normal  0.520585  normal 
 
 
-
 
NC_011757  Mchl_0153  short-chain dehydrogenase/reductase SDR  54.05 
 
 
262 aa  252  4.0000000000000004e-66  Methylobacterium chloromethanicum CM4  Bacteria  normal  0.418257  normal  0.135019 
 
 
-
 
NC_007974  Rmet_4523  short-chain dehydrogenase/reductase SDR  50.78 
 
 
266 aa  252  5.000000000000001e-66  Cupriavidus metallidurans CH34  Bacteria  normal  0.642907  decreased coverage  0.0040913 
 
 
-
 
NC_009720  Xaut_1294  short-chain dehydrogenase/reductase SDR  51.16 
 
 
266 aa  249  3e-65  Xanthobacter autotrophicus Py2  Bacteria  normal  normal 
 
 
-
 
NC_012858  Rleg_6849  short-chain dehydrogenase/reductase SDR  48.67 
 
 
269 aa  249  3e-65  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.674583 
 
 
-
 
NC_010511  M446_3566  short-chain dehydrogenase/reductase SDR  54.05 
 
 
269 aa  247  1e-64  Methylobacterium sp. 4-46  Bacteria  normal  normal  0.138362 
 
 
-
 
NC_011368  Rleg2_5185  short-chain dehydrogenase/reductase SDR  47.88 
 
 
285 aa  248  1e-64  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal 
 
 
-
 
NC_002947  PP_2989  short chain dehydrogenase/reductase family oxidoreductase  51.35 
 
 
264 aa  246  2e-64  Pseudomonas putida KT2440  Bacteria  normal  normal  0.0851531 
 
 
-
 
NC_010505  Mrad2831_1275  short-chain dehydrogenase/reductase SDR  51.72 
 
 
271 aa  246  2e-64  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal 
 
 
-
 
NC_011365  Gdia_0995  short-chain dehydrogenase/reductase SDR  50.19 
 
 
267 aa  246  2e-64  Gluconacetobacter diazotrophicus PAl 5  Bacteria  normal  normal 
 
 
-
 
NC_007492  Pfl01_2478  Short-chain dehydrogenase/reductase SDR  51.17 
 
 
262 aa  246  2e-64  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal 
 
 
-
 
NC_010172  Mext_0209  short-chain dehydrogenase/reductase SDR  52.9 
 
 
262 aa  247  2e-64  Methylobacterium extorquens PA1  Bacteria  normal  0.128983  normal 
 
 
-
 
NC_009512  Pput_2703  short-chain dehydrogenase/reductase SDR  51.74 
 
 
264 aa  247  2e-64  Pseudomonas putida F1  Bacteria  normal  normal 
 
 
-
 
NC_010505  Mrad2831_4718  short-chain dehydrogenase/reductase SDR  51.33 
 
 
270 aa  246  3e-64  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal 
 
 
-
 
NC_012912  Dd1591_2059  short-chain dehydrogenase/reductase SDR  48.44 
 
 
260 aa  244  9.999999999999999e-64  Dickeya zeae Ech1591  Bacteria  normal  n/a   
 
 
-
 
NC_010322  PputGB1_3070  short-chain dehydrogenase/reductase SDR  48.25 
 
 
265 aa  241  1e-62  Pseudomonas putida GB-1  Bacteria  normal  0.0355963  normal 
 
 
-
 
NC_004578  PSPTO_1864  oxidoreductase, short chain dehydrogenase/reductase family  49.61 
 
 
262 aa  238  5.999999999999999e-62  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_011663  Sbal223_2174  short-chain dehydrogenase/reductase SDR  48.05 
 
 
261 aa  236  3e-61  Shewanella baltica OS223  Bacteria  normal  0.30567  hitchhiker  0.00567391 
 
 
-
 
NC_007492  Pfl01_2716  Short-chain dehydrogenase/reductase SDR  45.77 
 
 
265 aa  232  4.0000000000000004e-60  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal  0.490599 
 
 
-
 
NC_009485  BBta_5145  putative Short-chain dehydrogenase/reductase SDR  50 
 
 
267 aa  229  3e-59  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.645114  normal  0.0551529 
 
 
-
 
NC_011071  Smal_2007  short-chain dehydrogenase/reductase SDR  51.95 
 
 
262 aa  227  2e-58  Stenotrophomonas maltophilia R551-3  Bacteria  normal  0.511264  normal 
 
 
-
 
NC_012792  Vapar_5551  short-chain dehydrogenase/reductase SDR  47.35 
 
 
266 aa  225  7e-58  Variovorax paradoxus S110  Bacteria  normal  0.614615  n/a   
 
 
-
 
NC_007908  Rfer_0308  short-chain dehydrogenase/reductase SDR  46.59 
 
 
266 aa  224  1e-57  Rhodoferax ferrireducens T118  Bacteria  normal  0.130238  n/a   
 
 
-
 
NC_007948  Bpro_2349  short-chain dehydrogenase/reductase SDR  46.59 
 
 
266 aa  224  1e-57  Polaromonas sp. JS666  Bacteria  normal  0.341044  normal 
 
 
-
 
NC_012912  Dd1591_3491  short-chain dehydrogenase/reductase SDR  47.66 
 
 
287 aa  222  4e-57  Dickeya zeae Ech1591  Bacteria  normal  0.210779  n/a   
 
 
-
 
NC_010505  Mrad2831_4444  short-chain dehydrogenase/reductase SDR  55.98 
 
 
264 aa  220  1.9999999999999999e-56  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.241971  normal 
 
 
-
 
NC_009436  Ent638_1512  short-chain dehydrogenase/reductase SDR  46.3 
 
 
264 aa  214  8e-55  Enterobacter sp. 638  Bacteria  normal  normal  0.360234 
 
 
-
 
NC_012850  Rleg_0887  short-chain dehydrogenase/reductase SDR  43.18 
 
 
266 aa  211  9e-54  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal 
 
 
-
 
NC_007511  Bcep18194_B0958  Short-chain dehydrogenase/reductase SDR  44.44 
 
 
263 aa  205  8e-52  Burkholderia sp. 383  Bacteria  normal  normal 
 
 
-
 
NC_010338  Caul_0512  short-chain dehydrogenase/reductase SDR  47.41 
 
 
269 aa  197  1.0000000000000001e-49  Caulobacter sp. K31  Bacteria  normal  normal 
 
 
-
 
NC_010002  Daci_5779  short-chain dehydrogenase/reductase SDR  44.4 
 
 
268 aa  194  2e-48  Delftia acidovorans SPH-1  Bacteria  normal  hitchhiker  0.00272439 
 
 
-
 
NC_009621  Smed_5566  short-chain dehydrogenase/reductase SDR  48.19 
 
 
199 aa  184  2.0000000000000003e-45  Sinorhizobium medicae WSM419  Bacteria  normal  normal  0.0343056 
 
 
-
 
NC_009664  Krad_2466  short-chain dehydrogenase/reductase SDR  39.29 
 
 
283 aa  176  4e-43  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal 
 
 
-
 
NC_009953  Sare_0129  short-chain dehydrogenase/reductase SDR  40.95 
 
 
269 aa  175  6e-43  Salinispora arenicola CNS-205  Bacteria  normal  decreased coverage  0.0000288771 
 
 
-
 
NC_009380  Strop_0124  short-chain dehydrogenase/reductase SDR  40.69 
 
 
269 aa  173  2.9999999999999996e-42  Salinispora tropica CNB-440  Bacteria  normal  normal 
 
 
-
 
NC_013169  Ksed_05610  short-chain dehydrogenase of unknown substrate specificity  42.42 
 
 
296 aa  169  3e-41  Kytococcus sedentarius DSM 20547  Bacteria  normal  0.100134  normal  0.886117 
 
 
-
 
NC_014151  Cfla_2979  short-chain dehydrogenase/reductase SDR  44.3 
 
 
269 aa  169  3e-41  Cellulomonas flavigena DSM 20109  Bacteria  normal  normal 
 
 
-
 
NC_013510  Tcur_1833  short-chain dehydrogenase/reductase SDR  41.35 
 
 
252 aa  168  7e-41  Thermomonospora curvata DSM 43183  Bacteria  normal  0.092001  n/a   
 
 
-
 
NC_013159  Svir_38500  short-chain dehydrogenase of unknown substrate specificity  41.96 
 
 
253 aa  168  8e-41  Saccharomonospora viridis DSM 43017  Bacteria  normal  normal 
 
 
-
 
NC_013521  Sked_35320  short-chain dehydrogenase of unknown substrate specificity  44.49 
 
 
249 aa  167  1e-40  Sanguibacter keddieii DSM 10542  Bacteria  normal  0.135035  normal  0.316469 
 
 
-
 
NC_014165  Tbis_2195  short-chain dehydrogenase/reductase SDR  41.1 
 
 
250 aa  166  4e-40  Thermobispora bispora DSM 43833  Bacteria  normal  normal  0.92313 
 
 
-
 
NC_013093  Amir_6941  short-chain dehydrogenase/reductase SDR  42.49 
 
 
259 aa  165  5.9999999999999996e-40  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_012669  Bcav_3647  short-chain dehydrogenase/reductase SDR  43.42 
 
 
255 aa  165  8e-40  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal 
 
 
-
 
NC_009338  Mflv_0244  short-chain dehydrogenase/reductase SDR  41.78 
 
 
258 aa  162  5.0000000000000005e-39  Mycobacterium gilvum PYR-GCK  Bacteria  normal  normal 
 
 
-
 
NC_013174  Jden_2426  short-chain dehydrogenase/reductase SDR  42.42 
 
 
269 aa  159  5e-38  Jonesia denitrificans DSM 20603  Bacteria  normal  normal  0.316114 
 
 
-
 
NC_013595  Sros_6514  short-chain dehydrogenase/reductase SDR  43.36 
 
 
250 aa  159  6e-38  Streptosporangium roseum DSM 43021  Bacteria  normal  0.757683  normal  0.645684 
 
 
-
 
NC_008146  Mmcs_0480  short-chain dehydrogenase/reductase SDR  41.96 
 
 
258 aa  158  1e-37  Mycobacterium sp. MCS  Bacteria  normal  n/a   
 
 
-
 
NC_008705  Mkms_0491  short-chain dehydrogenase/reductase SDR  41.96 
 
 
258 aa  158  1e-37  Mycobacterium sp. KMS  Bacteria  normal  normal  0.354983 
 
 
-
 
NC_009077  Mjls_0469  short-chain dehydrogenase/reductase SDR  41.52 
 
 
258 aa  157  2e-37  Mycobacterium sp. JLS  Bacteria  normal  normal 
 
 
-
 
NC_009664  Krad_1004  short-chain dehydrogenase/reductase SDR  40.25 
 
 
276 aa  155  7e-37  Kineococcus radiotolerans SRS30216  Bacteria  normal  0.118299  decreased coverage  0.00158374 
 
 
-
 
NC_008699  Noca_1466  short-chain dehydrogenase/reductase SDR  41.33 
 
 
253 aa  155  8e-37  Nocardioides sp. JS614  Bacteria  normal  0.0605466  n/a   
 
 
-
 
NC_008726  Mvan_0661  short-chain dehydrogenase/reductase SDR  38.96 
 
 
258 aa  153  2e-36  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  normal  0.381329 
 
 
-
 
NC_013510  Tcur_3579  short-chain dehydrogenase/reductase SDR  47.83 
 
 
258 aa  152  5.9999999999999996e-36  Thermomonospora curvata DSM 43183  Bacteria  normal  0.392131  n/a   
 
 
-
 
NC_013947  Snas_6420  short-chain dehydrogenase/reductase SDR  42.04 
 
 
259 aa  149  3e-35  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal 
 
 
-
 
NC_011886  Achl_0516  short-chain dehydrogenase/reductase SDR  41.6 
 
 
263 aa  149  4e-35  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal 
 
 
-
 
NC_009718  Fnod_0523  short-chain dehydrogenase/reductase SDR  36.21 
 
 
255 aa  149  4e-35  Fervidobacterium nodosum Rt17-B1  Bacteria  normal  n/a   
 
 
-
 
NC_013530  Xcel_3148  short-chain dehydrogenase/reductase SDR  40 
 
 
259 aa  149  6e-35  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  n/a   
 
 
-
 
NC_008541  Arth_0289  short-chain dehydrogenase/reductase SDR  40.87 
 
 
258 aa  146  4.0000000000000006e-34  Arthrobacter sp. FB24  Bacteria  normal  n/a   
 
 
-
 
NC_013131  Caci_8408  short-chain dehydrogenase/reductase SDR  41.53 
 
 
254 aa  145  5e-34  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.485174  normal 
 
 
-
 
NC_013521  Sked_19470  short-chain dehydrogenase of unknown substrate specificity  41.59 
 
 
287 aa  145  8.000000000000001e-34  Sanguibacter keddieii DSM 10542  Bacteria  normal  normal 
 
 
-
 
NC_009565  TBFG_11577  ketoacyl reductase  38.46 
 
 
267 aa  145  9e-34  Mycobacterium tuberculosis F11  Bacteria  normal  normal 
 
 
-
 
NC_008146  Mmcs_0188  short-chain dehydrogenase/reductase SDR  41.18 
 
 
262 aa  145  9e-34  Mycobacterium sp. MCS  Bacteria  normal  n/a   
 
 
-
 
NC_008705  Mkms_0197  short-chain dehydrogenase/reductase SDR  41.18 
 
 
262 aa  145  9e-34  Mycobacterium sp. KMS  Bacteria  normal  normal 
 
 
-
 
NC_007413  Ava_1572  Short-chain dehydrogenase/reductase SDR  35.17 
 
 
263 aa  144  2e-33  Anabaena variabilis ATCC 29413  Bacteria  normal  normal  0.577459 
 
 
-
 
NC_013172  Bfae_25790  short-chain dehydrogenase of unknown substrate specificity  38.94 
 
 
282 aa  143  3e-33  Brachybacterium faecium DSM 4810  Bacteria  normal  n/a   
 
 
-
 
NC_013522  Taci_1655  short-chain dehydrogenase/reductase SDR  34.96 
 
 
272 aa  143  3e-33  Thermanaerovibrio acidaminovorans DSM 6589  Bacteria  normal  n/a   
 
 
-
 
NC_013235  Namu_5163  short-chain dehydrogenase/reductase SDR  38.39 
 
 
258 aa  142  4e-33  Nakamurella multipartita DSM 44233  Bacteria  normal  normal 
 
 
-
 
NC_008463  PA14_08440  putative short chain alcohol dehydrogenase  39.91 
 
 
266 aa  142  4e-33  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  hitchhiker  0.0000000229698 
 
 
-
 
NC_009338  Mflv_3538  short-chain dehydrogenase/reductase SDR  39.91 
 
 
259 aa  142  5e-33  Mycobacterium gilvum PYR-GCK  Bacteria  normal  0.0177311  normal  0.151964 
 
 
-
 
NC_013131  Caci_8914  short-chain dehydrogenase/reductase SDR  43.36 
 
 
255 aa  141  9.999999999999999e-33  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal  0.505504 
 
 
-
 
NC_009953  Sare_1619  short-chain dehydrogenase/reductase SDR  44.98 
 
 
271 aa  141  9.999999999999999e-33  Salinispora arenicola CNS-205  Bacteria  normal  normal  0.61951 
 
 
-
 
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