More than 300 homologs were found in PanDaTox collection
for query gene BBta_5145 on replicon NC_009485
Organism: Bradyrhizobium sp. BTAi1



Page 1 of 3    << first  < prev  1  2  3    next >  last >>   


Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009485  BBta_5145  putative Short-chain dehydrogenase/reductase SDR  100 
 
 
267 aa  536  1e-151  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.645114  normal  0.0551529 
 
 
-
 
NC_007511  Bcep18194_B0958  Short-chain dehydrogenase/reductase SDR  57.25 
 
 
263 aa  281  6.000000000000001e-75  Burkholderia sp. 383  Bacteria  normal  normal 
 
 
-
 
NC_010002  Daci_5779  short-chain dehydrogenase/reductase SDR  57.63 
 
 
268 aa  275  7e-73  Delftia acidovorans SPH-1  Bacteria  normal  hitchhiker  0.00272439 
 
 
-
 
NC_007948  Bpro_2349  short-chain dehydrogenase/reductase SDR  50 
 
 
266 aa  240  2e-62  Polaromonas sp. JS666  Bacteria  normal  0.341044  normal 
 
 
-
 
NC_007908  Rfer_0308  short-chain dehydrogenase/reductase SDR  50 
 
 
266 aa  239  2.9999999999999997e-62  Rhodoferax ferrireducens T118  Bacteria  normal  0.130238  n/a   
 
 
-
 
NC_012792  Vapar_5551  short-chain dehydrogenase/reductase SDR  48.67 
 
 
266 aa  234  9e-61  Variovorax paradoxus S110  Bacteria  normal  0.614615  n/a   
 
 
-
 
NC_011666  Msil_0129  short-chain dehydrogenase/reductase SDR  47.1 
 
 
271 aa  229  3e-59  Methylocella silvestris BL2  Bacteria  n/a    normal 
 
 
-
 
NC_008391  Bamb_3723  short-chain dehydrogenase/reductase SDR  48.85 
 
 
266 aa  228  5e-59  Burkholderia ambifaria AMMD  Bacteria  normal  0.662669  normal  0.858524 
 
 
-
 
NC_010623  Bphy_4200  short-chain dehydrogenase/reductase SDR  50.39 
 
 
271 aa  228  7e-59  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_010552  BamMC406_4199  short-chain dehydrogenase/reductase SDR  48.85 
 
 
266 aa  228  8e-59  Burkholderia ambifaria MC40-6  Bacteria  normal  0.308915  normal  0.0922746 
 
 
-
 
NC_012850  Rleg_3582  short-chain dehydrogenase/reductase SDR  47.31 
 
 
265 aa  228  1e-58  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.15353 
 
 
-
 
NC_010086  Bmul_4300  short-chain dehydrogenase/reductase SDR  48.46 
 
 
266 aa  227  2e-58  Burkholderia multivorans ATCC 17616  Bacteria  normal  0.498015  normal 
 
 
-
 
NC_007511  Bcep18194_B1706  Short-chain dehydrogenase/reductase SDR  47.69 
 
 
266 aa  226  2e-58  Burkholderia sp. 383  Bacteria  normal  0.951732  normal 
 
 
-
 
NC_008061  Bcen_4061  short-chain dehydrogenase/reductase SDR  48.26 
 
 
281 aa  226  2e-58  Burkholderia cenocepacia AU 1054  Bacteria  normal  0.786818  n/a   
 
 
-
 
NC_008543  Bcen2424_4305  short-chain dehydrogenase/reductase SDR  48.26 
 
 
281 aa  226  2e-58  Burkholderia cenocepacia HI2424  Bacteria  normal  normal  0.699263 
 
 
-
 
NC_010515  Bcenmc03_3212  short-chain dehydrogenase/reductase SDR  48.26 
 
 
266 aa  226  4e-58  Burkholderia cenocepacia MC0-3  Bacteria  normal  0.177624  normal 
 
 
-
 
NC_011368  Rleg2_5185  short-chain dehydrogenase/reductase SDR  47.06 
 
 
285 aa  224  1e-57  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal 
 
 
-
 
NC_012850  Rleg_0887  short-chain dehydrogenase/reductase SDR  46.74 
 
 
266 aa  223  3e-57  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal 
 
 
-
 
NC_007974  Rmet_4523  short-chain dehydrogenase/reductase SDR  46.92 
 
 
266 aa  219  3e-56  Cupriavidus metallidurans CH34  Bacteria  normal  0.642907  decreased coverage  0.0040913 
 
 
-
 
NC_010681  Bphyt_3970  short-chain dehydrogenase/reductase SDR  46.3 
 
 
270 aa  218  8.999999999999998e-56  Burkholderia phytofirmans PsJN  Bacteria  normal  normal 
 
 
-
 
NC_009436  Ent638_1512  short-chain dehydrogenase/reductase SDR  44.53 
 
 
264 aa  216  2e-55  Enterobacter sp. 638  Bacteria  normal  normal  0.360234 
 
 
-
 
NC_011894  Mnod_1035  short-chain dehydrogenase/reductase SDR  47.06 
 
 
270 aa  217  2e-55  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.0312813  n/a   
 
 
-
 
NC_009621  Smed_5531  short-chain dehydrogenase/reductase SDR  45.1 
 
 
269 aa  214  9e-55  Sinorhizobium medicae WSM419  Bacteria  normal  0.356237  normal  0.14087 
 
 
-
 
NC_007951  Bxe_A4474  putative short-chain dehydrogenase/reductase SDR  46.67 
 
 
270 aa  214  9.999999999999999e-55  Burkholderia xenovorans LB400  Bacteria  normal  hitchhiker  0.000662369 
 
 
-
 
NC_012858  Rleg_6849  short-chain dehydrogenase/reductase SDR  45.1 
 
 
269 aa  214  9.999999999999999e-55  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.674583 
 
 
-
 
NC_007492  Pfl01_4040  Short-chain dehydrogenase/reductase SDR  50 
 
 
264 aa  212  5.999999999999999e-54  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.128419  normal  0.923094 
 
 
-
 
NC_011757  Mchl_0153  short-chain dehydrogenase/reductase SDR  47.29 
 
 
262 aa  210  2e-53  Methylobacterium chloromethanicum CM4  Bacteria  normal  0.418257  normal  0.135019 
 
 
-
 
NC_010322  PputGB1_3070  short-chain dehydrogenase/reductase SDR  45.31 
 
 
265 aa  207  1e-52  Pseudomonas putida GB-1  Bacteria  normal  0.0355963  normal 
 
 
-
 
NC_009656  PSPA7_5551  putative short-chain dehydrogenase  47.29 
 
 
265 aa  207  1e-52  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_007492  Pfl01_2716  Short-chain dehydrogenase/reductase SDR  44.31 
 
 
265 aa  207  2e-52  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal  0.490599 
 
 
-
 
NC_009720  Xaut_1294  short-chain dehydrogenase/reductase SDR  46.67 
 
 
266 aa  206  2e-52  Xanthobacter autotrophicus Py2  Bacteria  normal  normal 
 
 
-
 
NC_010172  Mext_0209  short-chain dehydrogenase/reductase SDR  46.9 
 
 
262 aa  206  4e-52  Methylobacterium extorquens PA1  Bacteria  normal  0.128983  normal 
 
 
-
 
NC_008463  PA14_63890  putative short-chain dehydrogenase  46.88 
 
 
265 aa  203  2e-51  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal 
 
 
-
 
NC_010725  Mpop_0718  short-chain dehydrogenase/reductase SDR  46.51 
 
 
263 aa  202  4e-51  Methylobacterium populi BJ001  Bacteria  normal  0.520585  normal 
 
 
-
 
NC_011365  Gdia_0995  short-chain dehydrogenase/reductase SDR  44.83 
 
 
267 aa  201  9.999999999999999e-51  Gluconacetobacter diazotrophicus PAl 5  Bacteria  normal  normal 
 
 
-
 
NC_009485  BBta_3264  putative oxidoreductase protein  44.09 
 
 
264 aa  201  9.999999999999999e-51  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.724633  normal 
 
 
-
 
NC_010505  Mrad2831_4718  short-chain dehydrogenase/reductase SDR  46.09 
 
 
270 aa  201  9.999999999999999e-51  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal 
 
 
-
 
NC_009664  Krad_2466  short-chain dehydrogenase/reductase SDR  45.69 
 
 
283 aa  199  3.9999999999999996e-50  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal 
 
 
-
 
NC_013421  Pecwa_2365  short-chain dehydrogenase/reductase SDR  43.19 
 
 
257 aa  199  5e-50  Pectobacterium wasabiae WPP163  Bacteria  normal  n/a   
 
 
-
 
NC_010511  M446_3566  short-chain dehydrogenase/reductase SDR  47.69 
 
 
269 aa  196  3e-49  Methylobacterium sp. 4-46  Bacteria  normal  normal  0.138362 
 
 
-
 
NC_010505  Mrad2831_1275  short-chain dehydrogenase/reductase SDR  45.45 
 
 
271 aa  195  8.000000000000001e-49  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal 
 
 
-
 
NC_011666  Msil_0380  short-chain dehydrogenase/reductase SDR  43.92 
 
 
265 aa  194  1e-48  Methylocella silvestris BL2  Bacteria  n/a    normal  0.453235 
 
 
-
 
NC_007347  Reut_A1901  Short-chain dehydrogenase/reductase SDR  45.17 
 
 
266 aa  193  3e-48  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_008048  Sala_0082  short-chain dehydrogenase/reductase SDR  43.56 
 
 
269 aa  190  2e-47  Sphingopyxis alaskensis RB2256  Bacteria  normal  normal 
 
 
-
 
NC_010338  Caul_0512  short-chain dehydrogenase/reductase SDR  43.14 
 
 
269 aa  188  7e-47  Caulobacter sp. K31  Bacteria  normal  normal 
 
 
-
 
NC_010338  Caul_3460  short-chain dehydrogenase/reductase SDR  43.75 
 
 
269 aa  187  2e-46  Caulobacter sp. K31  Bacteria  normal  0.590645  normal 
 
 
-
 
NC_009621  Smed_5566  short-chain dehydrogenase/reductase SDR  47.96 
 
 
199 aa  185  5e-46  Sinorhizobium medicae WSM419  Bacteria  normal  normal  0.0343056 
 
 
-
 
NC_009439  Pmen_1100  short-chain dehydrogenase/reductase SDR  43.53 
 
 
264 aa  184  9e-46  Pseudomonas mendocina ymp  Bacteria  normal  0.576998  normal  0.0165353 
 
 
-
 
NC_008391  Bamb_4735  short-chain dehydrogenase/reductase SDR  40.08 
 
 
262 aa  175  6e-43  Burkholderia ambifaria AMMD  Bacteria  normal  normal 
 
 
-
 
NC_007005  Psyr_3539  Short-chain dehydrogenase/reductase SDR  39.37 
 
 
262 aa  173  2.9999999999999996e-42  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal  0.0684522 
 
 
-
 
NC_009832  Spro_3183  short-chain dehydrogenase/reductase SDR  37.4 
 
 
260 aa  172  5.999999999999999e-42  Serratia proteamaculans 568  Bacteria  normal  normal 
 
 
-
 
NC_012912  Dd1591_3491  short-chain dehydrogenase/reductase SDR  39.76 
 
 
287 aa  172  5.999999999999999e-42  Dickeya zeae Ech1591  Bacteria  normal  0.210779  n/a   
 
 
-
 
NC_010552  BamMC406_5270  short-chain dehydrogenase/reductase SDR  39.3 
 
 
262 aa  172  6.999999999999999e-42  Burkholderia ambifaria MC40-6  Bacteria  normal  normal 
 
 
-
 
NC_009512  Pput_2703  short-chain dehydrogenase/reductase SDR  39.45 
 
 
264 aa  168  7e-41  Pseudomonas putida F1  Bacteria  normal  normal 
 
 
-
 
NC_002947  PP_2989  short chain dehydrogenase/reductase family oxidoreductase  39.45 
 
 
264 aa  167  1e-40  Pseudomonas putida KT2440  Bacteria  normal  normal  0.0851531 
 
 
-
 
NC_012912  Dd1591_2059  short-chain dehydrogenase/reductase SDR  35.8 
 
 
260 aa  167  1e-40  Dickeya zeae Ech1591  Bacteria  normal  n/a   
 
 
-
 
NC_004578  PSPTO_1864  oxidoreductase, short chain dehydrogenase/reductase family  37.8 
 
 
262 aa  167  2e-40  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_009436  Ent638_2278  short-chain dehydrogenase/reductase SDR  36.61 
 
 
260 aa  164  1.0000000000000001e-39  Enterobacter sp. 638  Bacteria  normal  normal  0.161761 
 
 
-
 
NC_011663  Sbal223_2174  short-chain dehydrogenase/reductase SDR  36.58 
 
 
261 aa  160  1e-38  Shewanella baltica OS223  Bacteria  normal  0.30567  hitchhiker  0.00567391 
 
 
-
 
NC_013510  Tcur_3579  short-chain dehydrogenase/reductase SDR  42.67 
 
 
258 aa  160  2e-38  Thermomonospora curvata DSM 43183  Bacteria  normal  0.392131  n/a   
 
 
-
 
NC_013093  Amir_6941  short-chain dehydrogenase/reductase SDR  40.71 
 
 
259 aa  160  3e-38  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_010505  Mrad2831_4444  short-chain dehydrogenase/reductase SDR  45.04 
 
 
264 aa  158  8e-38  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.241971  normal 
 
 
-
 
NC_009338  Mflv_0138  short-chain dehydrogenase/reductase SDR  37.02 
 
 
273 aa  158  9e-38  Mycobacterium gilvum PYR-GCK  Bacteria  normal  normal 
 
 
-
 
NC_007492  Pfl01_5106  Short-chain dehydrogenase/reductase SDR  40.76 
 
 
262 aa  156  3e-37  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.311622  normal  0.753041 
 
 
-
 
NC_011071  Smal_2007  short-chain dehydrogenase/reductase SDR  39.37 
 
 
262 aa  156  4e-37  Stenotrophomonas maltophilia R551-3  Bacteria  normal  0.511264  normal 
 
 
-
 
NC_013595  Sros_6514  short-chain dehydrogenase/reductase SDR  41.15 
 
 
250 aa  156  4e-37  Streptosporangium roseum DSM 43021  Bacteria  normal  0.757683  normal  0.645684 
 
 
-
 
NC_009656  PSPA7_0799  short chain dehydrogenase/reductase family oxidoreductase  41.13 
 
 
266 aa  156  4e-37  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_014148  Plim_1352  short-chain dehydrogenase/reductase SDR  39.37 
 
 
271 aa  155  4e-37  Planctomyces limnophilus DSM 3776  Bacteria  normal  0.708878  n/a   
 
 
-
 
NC_008463  PA14_08440  putative short chain alcohol dehydrogenase  41.56 
 
 
266 aa  155  5.0000000000000005e-37  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  hitchhiker  0.0000000229698 
 
 
-
 
NC_013522  Taci_1655  short-chain dehydrogenase/reductase SDR  37.83 
 
 
272 aa  155  7e-37  Thermanaerovibrio acidaminovorans DSM 6589  Bacteria  normal  n/a   
 
 
-
 
NC_009439  Pmen_3938  short-chain dehydrogenase/reductase SDR  39.15 
 
 
262 aa  155  8e-37  Pseudomonas mendocina ymp  Bacteria  normal  normal 
 
 
-
 
NC_007492  Pfl01_2478  Short-chain dehydrogenase/reductase SDR  37.4 
 
 
262 aa  154  2e-36  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal 
 
 
-
 
NC_009718  Fnod_0523  short-chain dehydrogenase/reductase SDR  36.21 
 
 
255 aa  153  2.9999999999999998e-36  Fervidobacterium nodosum Rt17-B1  Bacteria  normal  n/a   
 
 
-
 
NC_008146  Mmcs_0480  short-chain dehydrogenase/reductase SDR  37.8 
 
 
258 aa  152  8e-36  Mycobacterium sp. MCS  Bacteria  normal  n/a   
 
 
-
 
NC_013093  Amir_2216  short-chain dehydrogenase/reductase SDR  41.41 
 
 
266 aa  152  8e-36  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_008705  Mkms_0491  short-chain dehydrogenase/reductase SDR  37.8 
 
 
258 aa  152  8e-36  Mycobacterium sp. KMS  Bacteria  normal  normal  0.354983 
 
 
-
 
NC_009565  TBFG_11577  ketoacyl reductase  44.06 
 
 
267 aa  151  1e-35  Mycobacterium tuberculosis F11  Bacteria  normal  normal 
 
 
-
 
NC_014165  Tbis_2195  short-chain dehydrogenase/reductase SDR  38.5 
 
 
250 aa  150  2e-35  Thermobispora bispora DSM 43833  Bacteria  normal  normal  0.92313 
 
 
-
 
NC_009077  Mjls_0469  short-chain dehydrogenase/reductase SDR  37.4 
 
 
258 aa  149  3e-35  Mycobacterium sp. JLS  Bacteria  normal  normal 
 
 
-
 
NC_013159  Svir_38500  short-chain dehydrogenase of unknown substrate specificity  39.47 
 
 
253 aa  149  4e-35  Saccharomonospora viridis DSM 43017  Bacteria  normal  normal 
 
 
-
 
NC_013510  Tcur_1833  short-chain dehydrogenase/reductase SDR  37.95 
 
 
252 aa  149  4e-35  Thermomonospora curvata DSM 43183  Bacteria  normal  0.092001  n/a   
 
 
-
 
NC_009338  Mflv_3538  short-chain dehydrogenase/reductase SDR  38.4 
 
 
259 aa  147  1.0000000000000001e-34  Mycobacterium gilvum PYR-GCK  Bacteria  normal  0.0177311  normal  0.151964 
 
 
-
 
NC_004578  PSPTO_0601  oxidoreductase, short chain dehydrogenase/reductase family  40 
 
 
258 aa  146  4.0000000000000006e-34  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_013161  Cyan8802_0137  short-chain dehydrogenase/reductase SDR  36.96 
 
 
261 aa  144  1e-33  Cyanothece sp. PCC 8802  Bacteria  normal  hitchhiker  0.00000076045 
 
 
-
 
NC_013169  Ksed_05610  short-chain dehydrogenase of unknown substrate specificity  38.96 
 
 
296 aa  144  1e-33  Kytococcus sedentarius DSM 20547  Bacteria  normal  0.100134  normal  0.886117 
 
 
-
 
NC_009338  Mflv_0244  short-chain dehydrogenase/reductase SDR  37.65 
 
 
258 aa  143  2e-33  Mycobacterium gilvum PYR-GCK  Bacteria  normal  normal 
 
 
-
 
NC_007005  Psyr_4572  Short-chain dehydrogenase/reductase SDR  40.85 
 
 
258 aa  142  4e-33  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal 
 
 
-
 
NC_011726  PCC8801_0140  short-chain dehydrogenase/reductase SDR  36.52 
 
 
261 aa  142  8e-33  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_008261  CPF_0353  short chain dehydrogenase/reductase family oxidoreductase  32.5 
 
 
265 aa  141  9e-33  Clostridium perfringens ATCC 13124  Bacteria  normal  0.45647  n/a   
 
 
-
 
NC_009380  Strop_0124  short-chain dehydrogenase/reductase SDR  33.08 
 
 
269 aa  141  9.999999999999999e-33  Salinispora tropica CNB-440  Bacteria  normal  normal 
 
 
-
 
NC_011884  Cyan7425_1889  short-chain dehydrogenase/reductase SDR  36.19 
 
 
264 aa  141  9.999999999999999e-33  Cyanothece sp. PCC 7425  Bacteria  normal  0.0188274  normal 
 
 
-
 
NC_012669  Bcav_3647  short-chain dehydrogenase/reductase SDR  38.86 
 
 
255 aa  141  9.999999999999999e-33  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal 
 
 
-
 
NC_013131  Caci_8914  short-chain dehydrogenase/reductase SDR  40 
 
 
255 aa  140  1.9999999999999998e-32  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal  0.505504 
 
 
-
 
NC_006369  lpl1378  hypothetical protein  33.89 
 
 
259 aa  140  1.9999999999999998e-32  Legionella pneumophila str. Lens  Bacteria  n/a    n/a   
 
 
-
 
NC_008262  CPR_0344  3-oxoacyl-[acyl-carrier protein] reductase  32.5 
 
 
265 aa  140  1.9999999999999998e-32  Clostridium perfringens SM101  Bacteria  normal  n/a   
 
 
-
 
NC_006368  lpp1382  hypothetical protein  33.89 
 
 
259 aa  139  3e-32  Legionella pneumophila str. Paris  Bacteria  n/a    n/a   
 
 
-
 
NC_013235  Namu_5163  short-chain dehydrogenase/reductase SDR  38.94 
 
 
258 aa  139  3.9999999999999997e-32  Nakamurella multipartita DSM 44233  Bacteria  normal  normal 
 
 
-
 
NC_013510  Tcur_2692  short-chain dehydrogenase/reductase SDR  37.19 
 
 
267 aa  139  3.9999999999999997e-32  Thermomonospora curvata DSM 43183  Bacteria  decreased coverage  0.0000430049  n/a   
 
 
-
 
NC_009953  Sare_0129  short-chain dehydrogenase/reductase SDR  32.94 
 
 
269 aa  139  4.999999999999999e-32  Salinispora arenicola CNS-205  Bacteria  normal  decreased coverage  0.0000288771 
 
 
-
 
NC_009565  TBFG_12531  short-chain type dehydrogenase/reductase  38.77 
 
 
268 aa  138  7e-32  Mycobacterium tuberculosis F11  Bacteria  normal  hitchhiker  0.00342881 
 
 
-
 
Page 1 of 3    << first  < prev  1  2  3    next >  last >>