More than 300 homologs were found in PanDaTox collection
for query gene Msil_0380 on replicon NC_011666
Organism: Methylocella silvestris BL2



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_011666  Msil_0380  short-chain dehydrogenase/reductase SDR  100 
 
 
265 aa  531  1e-150  Methylocella silvestris BL2  Bacteria  n/a    normal  0.453235 
 
 
-
 
NC_007951  Bxe_A4474  putative short-chain dehydrogenase/reductase SDR  58.2 
 
 
270 aa  309  2.9999999999999997e-83  Burkholderia xenovorans LB400  Bacteria  normal  hitchhiker  0.000662369 
 
 
-
 
NC_009656  PSPA7_5551  putative short-chain dehydrogenase  60.55 
 
 
265 aa  309  2.9999999999999997e-83  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_009439  Pmen_1100  short-chain dehydrogenase/reductase SDR  61 
 
 
264 aa  309  4e-83  Pseudomonas mendocina ymp  Bacteria  normal  0.576998  normal  0.0165353 
 
 
-
 
NC_010681  Bphyt_3970  short-chain dehydrogenase/reductase SDR  57.47 
 
 
270 aa  308  8e-83  Burkholderia phytofirmans PsJN  Bacteria  normal  normal 
 
 
-
 
NC_007492  Pfl01_4040  Short-chain dehydrogenase/reductase SDR  60.92 
 
 
264 aa  305  6e-82  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.128419  normal  0.923094 
 
 
-
 
NC_010623  Bphy_4200  short-chain dehydrogenase/reductase SDR  56.6 
 
 
271 aa  290  2e-77  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_008463  PA14_63890  putative short-chain dehydrogenase  57.03 
 
 
265 aa  290  2e-77  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal 
 
 
-
 
NC_010086  Bmul_4300  short-chain dehydrogenase/reductase SDR  54.58 
 
 
266 aa  285  5e-76  Burkholderia multivorans ATCC 17616  Bacteria  normal  0.498015  normal 
 
 
-
 
NC_008061  Bcen_4061  short-chain dehydrogenase/reductase SDR  53.82 
 
 
281 aa  284  1.0000000000000001e-75  Burkholderia cenocepacia AU 1054  Bacteria  normal  0.786818  n/a   
 
 
-
 
NC_008543  Bcen2424_4305  short-chain dehydrogenase/reductase SDR  53.82 
 
 
281 aa  284  1.0000000000000001e-75  Burkholderia cenocepacia HI2424  Bacteria  normal  normal  0.699263 
 
 
-
 
NC_007511  Bcep18194_B1706  Short-chain dehydrogenase/reductase SDR  53.05 
 
 
266 aa  281  7.000000000000001e-75  Burkholderia sp. 383  Bacteria  normal  0.951732  normal 
 
 
-
 
NC_010515  Bcenmc03_3212  short-chain dehydrogenase/reductase SDR  53.44 
 
 
266 aa  281  9e-75  Burkholderia cenocepacia MC0-3  Bacteria  normal  0.177624  normal 
 
 
-
 
NC_011666  Msil_0129  short-chain dehydrogenase/reductase SDR  56.25 
 
 
271 aa  280  1e-74  Methylocella silvestris BL2  Bacteria  n/a    normal 
 
 
-
 
NC_008391  Bamb_3723  short-chain dehydrogenase/reductase SDR  51.53 
 
 
266 aa  274  1.0000000000000001e-72  Burkholderia ambifaria AMMD  Bacteria  normal  0.662669  normal  0.858524 
 
 
-
 
NC_007974  Rmet_4523  short-chain dehydrogenase/reductase SDR  52.67 
 
 
266 aa  273  3e-72  Cupriavidus metallidurans CH34  Bacteria  normal  0.642907  decreased coverage  0.0040913 
 
 
-
 
NC_010552  BamMC406_4199  short-chain dehydrogenase/reductase SDR  51.15 
 
 
266 aa  270  1e-71  Burkholderia ambifaria MC40-6  Bacteria  normal  0.308915  normal  0.0922746 
 
 
-
 
NC_012850  Rleg_3582  short-chain dehydrogenase/reductase SDR  53.21 
 
 
265 aa  270  1e-71  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.15353 
 
 
-
 
NC_007347  Reut_A1901  Short-chain dehydrogenase/reductase SDR  55.47 
 
 
266 aa  267  1e-70  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_011894  Mnod_1035  short-chain dehydrogenase/reductase SDR  52.71 
 
 
270 aa  265  5e-70  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.0312813  n/a   
 
 
-
 
NC_008048  Sala_0082  short-chain dehydrogenase/reductase SDR  53.31 
 
 
269 aa  263  3e-69  Sphingopyxis alaskensis RB2256  Bacteria  normal  normal 
 
 
-
 
NC_012858  Rleg_6849  short-chain dehydrogenase/reductase SDR  50 
 
 
269 aa  259  4e-68  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.674583 
 
 
-
 
NC_011368  Rleg2_5185  short-chain dehydrogenase/reductase SDR  48.28 
 
 
285 aa  257  1e-67  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal 
 
 
-
 
NC_010338  Caul_3460  short-chain dehydrogenase/reductase SDR  51.88 
 
 
269 aa  256  3e-67  Caulobacter sp. K31  Bacteria  normal  0.590645  normal 
 
 
-
 
NC_010322  PputGB1_3070  short-chain dehydrogenase/reductase SDR  49.24 
 
 
265 aa  254  7e-67  Pseudomonas putida GB-1  Bacteria  normal  0.0355963  normal 
 
 
-
 
NC_009621  Smed_5531  short-chain dehydrogenase/reductase SDR  50 
 
 
269 aa  254  1.0000000000000001e-66  Sinorhizobium medicae WSM419  Bacteria  normal  0.356237  normal  0.14087 
 
 
-
 
NC_009720  Xaut_1294  short-chain dehydrogenase/reductase SDR  51.74 
 
 
266 aa  254  1.0000000000000001e-66  Xanthobacter autotrophicus Py2  Bacteria  normal  normal 
 
 
-
 
NC_011365  Gdia_0995  short-chain dehydrogenase/reductase SDR  50 
 
 
267 aa  253  2.0000000000000002e-66  Gluconacetobacter diazotrophicus PAl 5  Bacteria  normal  normal 
 
 
-
 
NC_010505  Mrad2831_1275  short-chain dehydrogenase/reductase SDR  53.23 
 
 
271 aa  247  1e-64  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal 
 
 
-
 
NC_010511  M446_3566  short-chain dehydrogenase/reductase SDR  54.92 
 
 
269 aa  246  2e-64  Methylobacterium sp. 4-46  Bacteria  normal  normal  0.138362 
 
 
-
 
NC_007492  Pfl01_2716  Short-chain dehydrogenase/reductase SDR  47.33 
 
 
265 aa  244  9.999999999999999e-64  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal  0.490599 
 
 
-
 
NC_010505  Mrad2831_4718  short-chain dehydrogenase/reductase SDR  49.24 
 
 
270 aa  240  2e-62  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal 
 
 
-
 
NC_008391  Bamb_4735  short-chain dehydrogenase/reductase SDR  49.03 
 
 
262 aa  239  2.9999999999999997e-62  Burkholderia ambifaria AMMD  Bacteria  normal  normal 
 
 
-
 
NC_009485  BBta_3264  putative oxidoreductase protein  46.95 
 
 
264 aa  238  5.999999999999999e-62  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.724633  normal 
 
 
-
 
NC_011757  Mchl_0153  short-chain dehydrogenase/reductase SDR  51.16 
 
 
262 aa  238  8e-62  Methylobacterium chloromethanicum CM4  Bacteria  normal  0.418257  normal  0.135019 
 
 
-
 
NC_010725  Mpop_0718  short-chain dehydrogenase/reductase SDR  50.78 
 
 
263 aa  237  1e-61  Methylobacterium populi BJ001  Bacteria  normal  0.520585  normal 
 
 
-
 
NC_010552  BamMC406_5270  short-chain dehydrogenase/reductase SDR  47.88 
 
 
262 aa  234  9e-61  Burkholderia ambifaria MC40-6  Bacteria  normal  normal 
 
 
-
 
NC_010172  Mext_0209  short-chain dehydrogenase/reductase SDR  50.39 
 
 
262 aa  232  5e-60  Methylobacterium extorquens PA1  Bacteria  normal  0.128983  normal 
 
 
-
 
NC_009436  Ent638_1512  short-chain dehydrogenase/reductase SDR  49.61 
 
 
264 aa  230  2e-59  Enterobacter sp. 638  Bacteria  normal  normal  0.360234 
 
 
-
 
NC_009832  Spro_3183  short-chain dehydrogenase/reductase SDR  48.24 
 
 
260 aa  229  3e-59  Serratia proteamaculans 568  Bacteria  normal  normal 
 
 
-
 
NC_012912  Dd1591_2059  short-chain dehydrogenase/reductase SDR  46.67 
 
 
260 aa  228  1e-58  Dickeya zeae Ech1591  Bacteria  normal  n/a   
 
 
-
 
NC_004578  PSPTO_1864  oxidoreductase, short chain dehydrogenase/reductase family  47.88 
 
 
262 aa  226  2e-58  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_012850  Rleg_0887  short-chain dehydrogenase/reductase SDR  47.15 
 
 
266 aa  226  3e-58  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal 
 
 
-
 
NC_007005  Psyr_3539  Short-chain dehydrogenase/reductase SDR  47.84 
 
 
262 aa  226  4e-58  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal  0.0684522 
 
 
-
 
NC_013421  Pecwa_2365  short-chain dehydrogenase/reductase SDR  46.3 
 
 
257 aa  225  5.0000000000000005e-58  Pectobacterium wasabiae WPP163  Bacteria  normal  n/a   
 
 
-
 
NC_009436  Ent638_2278  short-chain dehydrogenase/reductase SDR  45.8 
 
 
260 aa  220  1.9999999999999999e-56  Enterobacter sp. 638  Bacteria  normal  normal  0.161761 
 
 
-
 
NC_010505  Mrad2831_4444  short-chain dehydrogenase/reductase SDR  55.04 
 
 
264 aa  219  3e-56  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.241971  normal 
 
 
-
 
NC_007948  Bpro_2349  short-chain dehydrogenase/reductase SDR  46.74 
 
 
266 aa  217  1e-55  Polaromonas sp. JS666  Bacteria  normal  0.341044  normal 
 
 
-
 
NC_009512  Pput_2703  short-chain dehydrogenase/reductase SDR  45.1 
 
 
264 aa  217  1e-55  Pseudomonas putida F1  Bacteria  normal  normal 
 
 
-
 
NC_002947  PP_2989  short chain dehydrogenase/reductase family oxidoreductase  45.1 
 
 
264 aa  216  2e-55  Pseudomonas putida KT2440  Bacteria  normal  normal  0.0851531 
 
 
-
 
NC_007492  Pfl01_2478  Short-chain dehydrogenase/reductase SDR  47.1 
 
 
262 aa  216  4e-55  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal 
 
 
-
 
NC_011071  Smal_2007  short-chain dehydrogenase/reductase SDR  48.65 
 
 
262 aa  215  5e-55  Stenotrophomonas maltophilia R551-3  Bacteria  normal  0.511264  normal 
 
 
-
 
NC_007908  Rfer_0308  short-chain dehydrogenase/reductase SDR  45.59 
 
 
266 aa  213  1.9999999999999998e-54  Rhodoferax ferrireducens T118  Bacteria  normal  0.130238  n/a   
 
 
-
 
NC_011663  Sbal223_2174  short-chain dehydrogenase/reductase SDR  43.92 
 
 
261 aa  213  2.9999999999999995e-54  Shewanella baltica OS223  Bacteria  normal  0.30567  hitchhiker  0.00567391 
 
 
-
 
NC_012792  Vapar_5551  short-chain dehydrogenase/reductase SDR  47.88 
 
 
266 aa  213  3.9999999999999995e-54  Variovorax paradoxus S110  Bacteria  normal  0.614615  n/a   
 
 
-
 
NC_012912  Dd1591_3491  short-chain dehydrogenase/reductase SDR  45.1 
 
 
287 aa  199  3e-50  Dickeya zeae Ech1591  Bacteria  normal  0.210779  n/a   
 
 
-
 
NC_009485  BBta_5145  putative Short-chain dehydrogenase/reductase SDR  43.92 
 
 
267 aa  194  1e-48  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.645114  normal  0.0551529 
 
 
-
 
NC_010338  Caul_0512  short-chain dehydrogenase/reductase SDR  47.19 
 
 
269 aa  192  5e-48  Caulobacter sp. K31  Bacteria  normal  normal 
 
 
-
 
NC_007511  Bcep18194_B0958  Short-chain dehydrogenase/reductase SDR  42.21 
 
 
263 aa  191  1e-47  Burkholderia sp. 383  Bacteria  normal  normal 
 
 
-
 
NC_010002  Daci_5779  short-chain dehydrogenase/reductase SDR  42.02 
 
 
268 aa  182  4.0000000000000006e-45  Delftia acidovorans SPH-1  Bacteria  normal  hitchhiker  0.00272439 
 
 
-
 
NC_013169  Ksed_05610  short-chain dehydrogenase of unknown substrate specificity  43.28 
 
 
296 aa  177  1e-43  Kytococcus sedentarius DSM 20547  Bacteria  normal  0.100134  normal  0.886117 
 
 
-
 
NC_009621  Smed_5566  short-chain dehydrogenase/reductase SDR  45.6 
 
 
199 aa  173  1.9999999999999998e-42  Sinorhizobium medicae WSM419  Bacteria  normal  normal  0.0343056 
 
 
-
 
NC_014151  Cfla_2979  short-chain dehydrogenase/reductase SDR  43.67 
 
 
269 aa  168  1e-40  Cellulomonas flavigena DSM 20109  Bacteria  normal  normal 
 
 
-
 
NC_012669  Bcav_3647  short-chain dehydrogenase/reductase SDR  41.25 
 
 
255 aa  165  5.9999999999999996e-40  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal 
 
 
-
 
NC_008699  Noca_1466  short-chain dehydrogenase/reductase SDR  42.24 
 
 
253 aa  164  1.0000000000000001e-39  Nocardioides sp. JS614  Bacteria  normal  0.0605466  n/a   
 
 
-
 
NC_013510  Tcur_1833  short-chain dehydrogenase/reductase SDR  41.33 
 
 
252 aa  161  1e-38  Thermomonospora curvata DSM 43183  Bacteria  normal  0.092001  n/a   
 
 
-
 
NC_014165  Tbis_2195  short-chain dehydrogenase/reductase SDR  40.44 
 
 
250 aa  157  2e-37  Thermobispora bispora DSM 43833  Bacteria  normal  normal  0.92313 
 
 
-
 
NC_013521  Sked_35320  short-chain dehydrogenase of unknown substrate specificity  40.17 
 
 
249 aa  157  2e-37  Sanguibacter keddieii DSM 10542  Bacteria  normal  0.135035  normal  0.316469 
 
 
-
 
NC_013093  Amir_6941  short-chain dehydrogenase/reductase SDR  41.33 
 
 
259 aa  155  8e-37  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_013174  Jden_2426  short-chain dehydrogenase/reductase SDR  40.61 
 
 
269 aa  154  1e-36  Jonesia denitrificans DSM 20603  Bacteria  normal  normal  0.316114 
 
 
-
 
NC_009380  Strop_0124  short-chain dehydrogenase/reductase SDR  39.46 
 
 
269 aa  154  2e-36  Salinispora tropica CNB-440  Bacteria  normal  normal 
 
 
-
 
NC_013159  Svir_38500  short-chain dehydrogenase of unknown substrate specificity  38.84 
 
 
253 aa  147  2.0000000000000003e-34  Saccharomonospora viridis DSM 43017  Bacteria  normal  normal 
 
 
-
 
NC_009953  Sare_0129  short-chain dehydrogenase/reductase SDR  37.67 
 
 
269 aa  147  2.0000000000000003e-34  Salinispora arenicola CNS-205  Bacteria  normal  decreased coverage  0.0000288771 
 
 
-
 
NC_009664  Krad_2466  short-chain dehydrogenase/reductase SDR  39.3 
 
 
283 aa  146  4.0000000000000006e-34  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal 
 
 
-
 
NC_008541  Arth_0289  short-chain dehydrogenase/reductase SDR  41.59 
 
 
258 aa  145  6e-34  Arthrobacter sp. FB24  Bacteria  normal  n/a   
 
 
-
 
NC_013521  Sked_19470  short-chain dehydrogenase of unknown substrate specificity  39.91 
 
 
287 aa  142  5e-33  Sanguibacter keddieii DSM 10542  Bacteria  normal  normal 
 
 
-
 
NC_013595  Sros_6514  short-chain dehydrogenase/reductase SDR  39.82 
 
 
250 aa  140  1.9999999999999998e-32  Streptosporangium roseum DSM 43021  Bacteria  normal  0.757683  normal  0.645684 
 
 
-
 
NC_013510  Tcur_3579  short-chain dehydrogenase/reductase SDR  40.18 
 
 
258 aa  140  3e-32  Thermomonospora curvata DSM 43183  Bacteria  normal  0.392131  n/a   
 
 
-
 
NC_013530  Xcel_3148  short-chain dehydrogenase/reductase SDR  38.98 
 
 
259 aa  137  2e-31  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  n/a   
 
 
-
 
NC_013172  Bfae_25790  short-chain dehydrogenase of unknown substrate specificity  35.81 
 
 
282 aa  136  4e-31  Brachybacterium faecium DSM 4810  Bacteria  normal  n/a   
 
 
-
 
NC_013131  Caci_8408  short-chain dehydrogenase/reductase SDR  39.65 
 
 
254 aa  133  1.9999999999999998e-30  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.485174  normal 
 
 
-
 
NC_013235  Namu_5163  short-chain dehydrogenase/reductase SDR  39.29 
 
 
258 aa  134  1.9999999999999998e-30  Nakamurella multipartita DSM 44233  Bacteria  normal  normal 
 
 
-
 
NC_009664  Krad_1004  short-chain dehydrogenase/reductase SDR  37.18 
 
 
276 aa  133  3e-30  Kineococcus radiotolerans SRS30216  Bacteria  normal  0.118299  decreased coverage  0.00158374 
 
 
-
 
NC_008463  PA14_08440  putative short chain alcohol dehydrogenase  34.11 
 
 
266 aa  132  6.999999999999999e-30  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  hitchhiker  0.0000000229698 
 
 
-
 
NC_013522  Taci_1655  short-chain dehydrogenase/reductase SDR  32.52 
 
 
272 aa  132  7.999999999999999e-30  Thermanaerovibrio acidaminovorans DSM 6589  Bacteria  normal  n/a   
 
 
-
 
NC_008578  Acel_2122  short-chain dehydrogenase/reductase SDR  35.43 
 
 
249 aa  132  7.999999999999999e-30  Acidothermus cellulolyticus 11B  Bacteria  normal  normal  0.617745 
 
 
-
 
NC_009718  Fnod_0523  short-chain dehydrogenase/reductase SDR  33.04 
 
 
255 aa  130  2.0000000000000002e-29  Fervidobacterium nodosum Rt17-B1  Bacteria  normal  n/a   
 
 
-
 
NC_013131  Caci_8914  short-chain dehydrogenase/reductase SDR  38.36 
 
 
255 aa  130  2.0000000000000002e-29  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal  0.505504 
 
 
-
 
NC_009439  Pmen_3938  short-chain dehydrogenase/reductase SDR  34.06 
 
 
262 aa  130  2.0000000000000002e-29  Pseudomonas mendocina ymp  Bacteria  normal  normal 
 
 
-
 
NC_011886  Achl_0516  short-chain dehydrogenase/reductase SDR  38.26 
 
 
263 aa  130  2.0000000000000002e-29  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal 
 
 
-
 
NC_009338  Mflv_0244  short-chain dehydrogenase/reductase SDR  37.55 
 
 
258 aa  129  4.0000000000000003e-29  Mycobacterium gilvum PYR-GCK  Bacteria  normal  normal 
 
 
-
 
NC_011726  PCC8801_0140  short-chain dehydrogenase/reductase SDR  39.3 
 
 
261 aa  129  5.0000000000000004e-29  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_014148  Plim_1352  short-chain dehydrogenase/reductase SDR  40 
 
 
271 aa  128  9.000000000000001e-29  Planctomyces limnophilus DSM 3776  Bacteria  normal  0.708878  n/a   
 
 
-
 
NC_013161  Cyan8802_0137  short-chain dehydrogenase/reductase SDR  38.81 
 
 
261 aa  128  1.0000000000000001e-28  Cyanothece sp. PCC 8802  Bacteria  normal  hitchhiker  0.00000076045 
 
 
-
 
NC_013172  Bfae_27130  short-chain dehydrogenase of unknown substrate specificity  40.44 
 
 
258 aa  128  1.0000000000000001e-28  Brachybacterium faecium DSM 4810  Bacteria  normal  n/a   
 
 
-
 
NC_009077  Mjls_4315  short-chain dehydrogenase/reductase SDR  38.82 
 
 
267 aa  127  1.0000000000000001e-28  Mycobacterium sp. JLS  Bacteria  normal  normal  0.294207 
 
 
-
 
NC_009656  PSPA7_0799  short chain dehydrogenase/reductase family oxidoreductase  33.33 
 
 
266 aa  127  2.0000000000000002e-28  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_013947  Snas_6420  short-chain dehydrogenase/reductase SDR  37.72 
 
 
259 aa  127  2.0000000000000002e-28  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal 
 
 
-
 
NC_008146  Mmcs_4085  short-chain dehydrogenase/reductase SDR  38.82 
 
 
267 aa  127  2.0000000000000002e-28  Mycobacterium sp. MCS  Bacteria  normal  n/a   
 
 
-
 
NC_011879  Achl_3992  short-chain dehydrogenase/reductase SDR  37.61 
 
 
251 aa  127  2.0000000000000002e-28  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal  0.608737 
 
 
-
 
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