More than 300 homologs were found in PanDaTox collection
for query gene Smed_5566 on replicon NC_009621
Organism: Sinorhizobium medicae WSM419



Page 1 of 3    << first  < prev  1  2  3    next >  last >>   


Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009621  Smed_5566  short-chain dehydrogenase/reductase SDR  100 
 
 
199 aa  399  9.999999999999999e-111  Sinorhizobium medicae WSM419  Bacteria  normal  normal  0.0343056 
 
 
-
 
NC_007974  Rmet_4523  short-chain dehydrogenase/reductase SDR  66.84 
 
 
266 aa  259  2e-68  Cupriavidus metallidurans CH34  Bacteria  normal  0.642907  decreased coverage  0.0040913 
 
 
-
 
NC_008391  Bamb_3723  short-chain dehydrogenase/reductase SDR  66.49 
 
 
266 aa  257  6e-68  Burkholderia ambifaria AMMD  Bacteria  normal  0.662669  normal  0.858524 
 
 
-
 
NC_010552  BamMC406_4199  short-chain dehydrogenase/reductase SDR  64.68 
 
 
266 aa  256  2e-67  Burkholderia ambifaria MC40-6  Bacteria  normal  0.308915  normal  0.0922746 
 
 
-
 
NC_007511  Bcep18194_B1706  Short-chain dehydrogenase/reductase SDR  64.82 
 
 
266 aa  255  3e-67  Burkholderia sp. 383  Bacteria  normal  0.951732  normal 
 
 
-
 
NC_010086  Bmul_4300  short-chain dehydrogenase/reductase SDR  64.4 
 
 
266 aa  253  1.0000000000000001e-66  Burkholderia multivorans ATCC 17616  Bacteria  normal  0.498015  normal 
 
 
-
 
NC_008061  Bcen_4061  short-chain dehydrogenase/reductase SDR  66.14 
 
 
281 aa  253  1.0000000000000001e-66  Burkholderia cenocepacia AU 1054  Bacteria  normal  0.786818  n/a   
 
 
-
 
NC_008543  Bcen2424_4305  short-chain dehydrogenase/reductase SDR  66.14 
 
 
281 aa  253  1.0000000000000001e-66  Burkholderia cenocepacia HI2424  Bacteria  normal  normal  0.699263 
 
 
-
 
NC_010515  Bcenmc03_3212  short-chain dehydrogenase/reductase SDR  65.45 
 
 
266 aa  251  4.0000000000000004e-66  Burkholderia cenocepacia MC0-3  Bacteria  normal  0.177624  normal 
 
 
-
 
NC_012850  Rleg_3582  short-chain dehydrogenase/reductase SDR  63.21 
 
 
265 aa  245  4e-64  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.15353 
 
 
-
 
NC_011894  Mnod_1035  short-chain dehydrogenase/reductase SDR  64.55 
 
 
270 aa  236  1e-61  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.0312813  n/a   
 
 
-
 
NC_011666  Msil_0129  short-chain dehydrogenase/reductase SDR  59.79 
 
 
271 aa  234  8e-61  Methylocella silvestris BL2  Bacteria  n/a    normal 
 
 
-
 
NC_009720  Xaut_1294  short-chain dehydrogenase/reductase SDR  63.96 
 
 
266 aa  231  6e-60  Xanthobacter autotrophicus Py2  Bacteria  normal  normal 
 
 
-
 
NC_009485  BBta_3264  putative oxidoreductase protein  60.94 
 
 
264 aa  229  2e-59  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.724633  normal 
 
 
-
 
NC_011368  Rleg2_5185  short-chain dehydrogenase/reductase SDR  59.49 
 
 
285 aa  229  3e-59  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal 
 
 
-
 
NC_010623  Bphy_4200  short-chain dehydrogenase/reductase SDR  60.31 
 
 
271 aa  229  3e-59  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_007347  Reut_A1901  Short-chain dehydrogenase/reductase SDR  62.56 
 
 
266 aa  226  2e-58  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_010322  PputGB1_3070  short-chain dehydrogenase/reductase SDR  56.92 
 
 
265 aa  221  6e-57  Pseudomonas putida GB-1  Bacteria  normal  0.0355963  normal 
 
 
-
 
NC_010681  Bphyt_3970  short-chain dehydrogenase/reductase SDR  56.12 
 
 
270 aa  220  9.999999999999999e-57  Burkholderia phytofirmans PsJN  Bacteria  normal  normal 
 
 
-
 
NC_010511  M446_3566  short-chain dehydrogenase/reductase SDR  65.31 
 
 
269 aa  220  9.999999999999999e-57  Methylobacterium sp. 4-46  Bacteria  normal  normal  0.138362 
 
 
-
 
NC_007951  Bxe_A4474  putative short-chain dehydrogenase/reductase SDR  57.51 
 
 
270 aa  219  1.9999999999999999e-56  Burkholderia xenovorans LB400  Bacteria  normal  hitchhiker  0.000662369 
 
 
-
 
NC_010725  Mpop_0718  short-chain dehydrogenase/reductase SDR  62.43 
 
 
263 aa  216  2e-55  Methylobacterium populi BJ001  Bacteria  normal  0.520585  normal 
 
 
-
 
NC_010172  Mext_0209  short-chain dehydrogenase/reductase SDR  62.83 
 
 
262 aa  216  2e-55  Methylobacterium extorquens PA1  Bacteria  normal  0.128983  normal 
 
 
-
 
NC_011757  Mchl_0153  short-chain dehydrogenase/reductase SDR  62.3 
 
 
262 aa  215  2.9999999999999998e-55  Methylobacterium chloromethanicum CM4  Bacteria  normal  0.418257  normal  0.135019 
 
 
-
 
NC_007492  Pfl01_2716  Short-chain dehydrogenase/reductase SDR  53.61 
 
 
265 aa  214  9.999999999999999e-55  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal  0.490599 
 
 
-
 
NC_012858  Rleg_6849  short-chain dehydrogenase/reductase SDR  53.09 
 
 
269 aa  207  8e-53  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.674583 
 
 
-
 
NC_009621  Smed_5531  short-chain dehydrogenase/reductase SDR  53.09 
 
 
269 aa  204  6e-52  Sinorhizobium medicae WSM419  Bacteria  normal  0.356237  normal  0.14087 
 
 
-
 
NC_008048  Sala_0082  short-chain dehydrogenase/reductase SDR  58.12 
 
 
269 aa  202  3e-51  Sphingopyxis alaskensis RB2256  Bacteria  normal  normal 
 
 
-
 
NC_010505  Mrad2831_4718  short-chain dehydrogenase/reductase SDR  53.09 
 
 
270 aa  193  2e-48  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal 
 
 
-
 
NC_008463  PA14_63890  putative short-chain dehydrogenase  49.74 
 
 
265 aa  187  7e-47  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal 
 
 
-
 
NC_009485  BBta_5145  putative Short-chain dehydrogenase/reductase SDR  47.96 
 
 
267 aa  185  3e-46  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.645114  normal  0.0551529 
 
 
-
 
NC_009656  PSPA7_5551  putative short-chain dehydrogenase  49.23 
 
 
265 aa  183  1.0000000000000001e-45  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_012850  Rleg_0887  short-chain dehydrogenase/reductase SDR  44.62 
 
 
266 aa  182  3e-45  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal 
 
 
-
 
NC_007948  Bpro_2349  short-chain dehydrogenase/reductase SDR  45.36 
 
 
266 aa  180  1e-44  Polaromonas sp. JS666  Bacteria  normal  0.341044  normal 
 
 
-
 
NC_007908  Rfer_0308  short-chain dehydrogenase/reductase SDR  46.43 
 
 
266 aa  179  2.9999999999999997e-44  Rhodoferax ferrireducens T118  Bacteria  normal  0.130238  n/a   
 
 
-
 
NC_012792  Vapar_5551  short-chain dehydrogenase/reductase SDR  45.18 
 
 
266 aa  176  2e-43  Variovorax paradoxus S110  Bacteria  normal  0.614615  n/a   
 
 
-
 
NC_010505  Mrad2831_1275  short-chain dehydrogenase/reductase SDR  51.23 
 
 
271 aa  174  9.999999999999999e-43  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal 
 
 
-
 
NC_011666  Msil_0380  short-chain dehydrogenase/reductase SDR  45.6 
 
 
265 aa  173  9.999999999999999e-43  Methylocella silvestris BL2  Bacteria  n/a    normal  0.453235 
 
 
-
 
NC_007492  Pfl01_4040  Short-chain dehydrogenase/reductase SDR  48.19 
 
 
264 aa  169  2e-41  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.128419  normal  0.923094 
 
 
-
 
NC_009832  Spro_3183  short-chain dehydrogenase/reductase SDR  43.59 
 
 
260 aa  169  3e-41  Serratia proteamaculans 568  Bacteria  normal  normal 
 
 
-
 
NC_009439  Pmen_1100  short-chain dehydrogenase/reductase SDR  46.11 
 
 
264 aa  165  4e-40  Pseudomonas mendocina ymp  Bacteria  normal  0.576998  normal  0.0165353 
 
 
-
 
NC_010552  BamMC406_5270  short-chain dehydrogenase/reductase SDR  44.56 
 
 
262 aa  162  2.0000000000000002e-39  Burkholderia ambifaria MC40-6  Bacteria  normal  normal 
 
 
-
 
NC_011663  Sbal223_2174  short-chain dehydrogenase/reductase SDR  41.03 
 
 
261 aa  161  5.0000000000000005e-39  Shewanella baltica OS223  Bacteria  normal  0.30567  hitchhiker  0.00567391 
 
 
-
 
NC_002947  PP_2989  short chain dehydrogenase/reductase family oxidoreductase  44.56 
 
 
264 aa  161  6e-39  Pseudomonas putida KT2440  Bacteria  normal  normal  0.0851531 
 
 
-
 
NC_009512  Pput_2703  short-chain dehydrogenase/reductase SDR  44.56 
 
 
264 aa  161  7e-39  Pseudomonas putida F1  Bacteria  normal  normal 
 
 
-
 
NC_008391  Bamb_4735  short-chain dehydrogenase/reductase SDR  44.56 
 
 
262 aa  160  8.000000000000001e-39  Burkholderia ambifaria AMMD  Bacteria  normal  normal 
 
 
-
 
NC_012912  Dd1591_2059  short-chain dehydrogenase/reductase SDR  38.97 
 
 
260 aa  160  1e-38  Dickeya zeae Ech1591  Bacteria  normal  n/a   
 
 
-
 
NC_007492  Pfl01_2478  Short-chain dehydrogenase/reductase SDR  43.52 
 
 
262 aa  157  8e-38  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal 
 
 
-
 
NC_004578  PSPTO_1864  oxidoreductase, short chain dehydrogenase/reductase family  43.08 
 
 
262 aa  157  1e-37  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_011365  Gdia_0995  short-chain dehydrogenase/reductase SDR  41.54 
 
 
267 aa  157  1e-37  Gluconacetobacter diazotrophicus PAl 5  Bacteria  normal  normal 
 
 
-
 
NC_009436  Ent638_2278  short-chain dehydrogenase/reductase SDR  40.51 
 
 
260 aa  156  2e-37  Enterobacter sp. 638  Bacteria  normal  normal  0.161761 
 
 
-
 
NC_010338  Caul_3460  short-chain dehydrogenase/reductase SDR  45.69 
 
 
269 aa  156  2e-37  Caulobacter sp. K31  Bacteria  normal  0.590645  normal 
 
 
-
 
NC_009436  Ent638_1512  short-chain dehydrogenase/reductase SDR  40.41 
 
 
264 aa  152  4e-36  Enterobacter sp. 638  Bacteria  normal  normal  0.360234 
 
 
-
 
NC_007005  Psyr_3539  Short-chain dehydrogenase/reductase SDR  39.9 
 
 
262 aa  148  7e-35  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal  0.0684522 
 
 
-
 
NC_013421  Pecwa_2365  short-chain dehydrogenase/reductase SDR  39.38 
 
 
257 aa  146  2.0000000000000003e-34  Pectobacterium wasabiae WPP163  Bacteria  normal  n/a   
 
 
-
 
NC_012912  Dd1591_3491  short-chain dehydrogenase/reductase SDR  42.05 
 
 
287 aa  144  1e-33  Dickeya zeae Ech1591  Bacteria  normal  0.210779  n/a   
 
 
-
 
NC_010505  Mrad2831_4444  short-chain dehydrogenase/reductase SDR  48.85 
 
 
264 aa  142  4e-33  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.241971  normal 
 
 
-
 
NC_011071  Smal_2007  short-chain dehydrogenase/reductase SDR  43.01 
 
 
262 aa  138  4.999999999999999e-32  Stenotrophomonas maltophilia R551-3  Bacteria  normal  0.511264  normal 
 
 
-
 
NC_010002  Daci_5779  short-chain dehydrogenase/reductase SDR  40.62 
 
 
268 aa  135  5e-31  Delftia acidovorans SPH-1  Bacteria  normal  hitchhiker  0.00272439 
 
 
-
 
NC_010338  Caul_0512  short-chain dehydrogenase/reductase SDR  39.46 
 
 
269 aa  132  3.9999999999999996e-30  Caulobacter sp. K31  Bacteria  normal  normal 
 
 
-
 
NC_007511  Bcep18194_B0958  Short-chain dehydrogenase/reductase SDR  40.61 
 
 
263 aa  128  6e-29  Burkholderia sp. 383  Bacteria  normal  normal 
 
 
-
 
NC_009664  Krad_2466  short-chain dehydrogenase/reductase SDR  39.13 
 
 
283 aa  122  4e-27  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal 
 
 
-
 
NC_014148  Plim_1352  short-chain dehydrogenase/reductase SDR  36.52 
 
 
271 aa  108  3e-23  Planctomyces limnophilus DSM 3776  Bacteria  normal  0.708878  n/a   
 
 
-
 
NC_013947  Snas_6420  short-chain dehydrogenase/reductase SDR  34.73 
 
 
259 aa  106  2e-22  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal 
 
 
-
 
NC_013093  Amir_6941  short-chain dehydrogenase/reductase SDR  34.78 
 
 
259 aa  105  6e-22  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_013510  Tcur_1833  short-chain dehydrogenase/reductase SDR  39.6 
 
 
252 aa  105  6e-22  Thermomonospora curvata DSM 43183  Bacteria  normal  0.092001  n/a   
 
 
-
 
NC_014165  Tbis_2195  short-chain dehydrogenase/reductase SDR  36.42 
 
 
250 aa  101  7e-21  Thermobispora bispora DSM 43833  Bacteria  normal  normal  0.92313 
 
 
-
 
NC_008463  PA14_08440  putative short chain alcohol dehydrogenase  36.36 
 
 
266 aa  99.8  2e-20  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  hitchhiker  0.0000000229698 
 
 
-
 
NC_013510  Tcur_3579  short-chain dehydrogenase/reductase SDR  46.3 
 
 
258 aa  99.4  3e-20  Thermomonospora curvata DSM 43183  Bacteria  normal  0.392131  n/a   
 
 
-
 
NC_009656  PSPA7_0799  short chain dehydrogenase/reductase family oxidoreductase  36.36 
 
 
266 aa  98.6  5e-20  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_013169  Ksed_05610  short-chain dehydrogenase of unknown substrate specificity  36.36 
 
 
296 aa  98.6  5e-20  Kytococcus sedentarius DSM 20547  Bacteria  normal  0.100134  normal  0.886117 
 
 
-
 
NC_012669  Bcav_3647  short-chain dehydrogenase/reductase SDR  37.2 
 
 
255 aa  98.6  6e-20  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal 
 
 
-
 
NC_013131  Caci_8408  short-chain dehydrogenase/reductase SDR  36.42 
 
 
254 aa  98.6  6e-20  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.485174  normal 
 
 
-
 
NC_010117  COXBURSA331_A1015  short chain dehydrogenase/reductase family oxidoreductase  31.76 
 
 
263 aa  98.2  7e-20  Coxiella burnetii RSA 331  Bacteria  normal  n/a   
 
 
-
 
NC_013131  Caci_6716  short-chain dehydrogenase/reductase SDR  35.38 
 
 
259 aa  97.8  9e-20  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.543445  normal 
 
 
-
 
NC_009077  Mjls_4315  short-chain dehydrogenase/reductase SDR  40.62 
 
 
267 aa  97.1  1e-19  Mycobacterium sp. JLS  Bacteria  normal  normal  0.294207 
 
 
-
 
NC_008146  Mmcs_0188  short-chain dehydrogenase/reductase SDR  37.25 
 
 
262 aa  97.8  1e-19  Mycobacterium sp. MCS  Bacteria  normal  n/a   
 
 
-
 
NC_008146  Mmcs_4085  short-chain dehydrogenase/reductase SDR  36.81 
 
 
267 aa  97.8  1e-19  Mycobacterium sp. MCS  Bacteria  normal  n/a   
 
 
-
 
NC_009718  Fnod_0523  short-chain dehydrogenase/reductase SDR  31.38 
 
 
255 aa  97.8  1e-19  Fervidobacterium nodosum Rt17-B1  Bacteria  normal  n/a   
 
 
-
 
NC_008705  Mkms_0197  short-chain dehydrogenase/reductase SDR  37.25 
 
 
262 aa  97.8  1e-19  Mycobacterium sp. KMS  Bacteria  normal  normal 
 
 
-
 
NC_008705  Mkms_4161  short-chain dehydrogenase/reductase SDR  36.81 
 
 
267 aa  97.8  1e-19  Mycobacterium sp. KMS  Bacteria  normal  0.209625  normal 
 
 
-
 
NC_013235  Namu_0089  short-chain dehydrogenase/reductase SDR  42.75 
 
 
264 aa  97.1  2e-19  Nakamurella multipartita DSM 44233  Bacteria  normal  normal 
 
 
-
 
NC_009077  Mjls_0177  short-chain dehydrogenase/reductase SDR  37.25 
 
 
262 aa  96.3  2e-19  Mycobacterium sp. JLS  Bacteria  normal  normal  0.721122 
 
 
-
 
NC_009727  CBUD_1145  short chain dehydrogenase  31.18 
 
 
321 aa  96.3  3e-19  Coxiella burnetii Dugway 5J108-111  Bacteria  normal  n/a   
 
 
-
 
NC_013037  Dfer_5585  short-chain dehydrogenase/reductase SDR  40.52 
 
 
265 aa  94.7  8e-19  Dyadobacter fermentans DSM 18053  Bacteria  normal  0.892025  normal  0.853623 
 
 
-
 
NC_010717  PXO_02915  serine 3-dehydrogenase  49.11 
 
 
251 aa  94.4  9e-19  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  n/a   
 
 
-
 
NC_009439  Pmen_3938  short-chain dehydrogenase/reductase SDR  35.71 
 
 
262 aa  94  1e-18  Pseudomonas mendocina ymp  Bacteria  normal  normal 
 
 
-
 
NC_013730  Slin_0497  short-chain dehydrogenase/reductase SDR  38.73 
 
 
360 aa  94  1e-18  Spirosoma linguale DSM 74  Bacteria  normal  normal 
 
 
-
 
NC_009338  Mflv_3538  short-chain dehydrogenase/reductase SDR  41.23 
 
 
259 aa  94  1e-18  Mycobacterium gilvum PYR-GCK  Bacteria  normal  0.0177311  normal  0.151964 
 
 
-
 
NC_013061  Phep_2442  short-chain dehydrogenase/reductase SDR  39.37 
 
 
262 aa  93.6  2e-18  Pedobacter heparinus DSM 2366  Bacteria  normal  0.191582  normal 
 
 
-
 
NC_013517  Sterm_1096  short-chain dehydrogenase/reductase SDR  35.06 
 
 
256 aa  93.2  2e-18  Sebaldella termitidis ATCC 33386  Bacteria  normal  n/a   
 
 
-
 
NC_009380  Strop_0124  short-chain dehydrogenase/reductase SDR  32.52 
 
 
269 aa  92.8  3e-18  Salinispora tropica CNB-440  Bacteria  normal  normal 
 
 
-
 
NC_009338  Mflv_0244  short-chain dehydrogenase/reductase SDR  31.82 
 
 
258 aa  92.8  3e-18  Mycobacterium gilvum PYR-GCK  Bacteria  normal  normal 
 
 
-
 
NC_008578  Acel_2122  short-chain dehydrogenase/reductase SDR  37.16 
 
 
249 aa  92.4  4e-18  Acidothermus cellulolyticus 11B  Bacteria  normal  normal  0.617745 
 
 
-
 
NC_009953  Sare_1619  short-chain dehydrogenase/reductase SDR  39.01 
 
 
271 aa  92.4  4e-18  Salinispora arenicola CNS-205  Bacteria  normal  normal  0.61951 
 
 
-
 
NC_013165  Shel_18580  short-chain dehydrogenase of unknown substrate specificity  41.38 
 
 
258 aa  91.7  7e-18  Slackia heliotrinireducens DSM 20476  Bacteria  normal  0.489964  normal 
 
 
-
 
NC_013161  Cyan8802_0137  short-chain dehydrogenase/reductase SDR  40.34 
 
 
261 aa  91.7  7e-18  Cyanothece sp. PCC 8802  Bacteria  normal  hitchhiker  0.00000076045 
 
 
-
 
NC_014151  Cfla_2979  short-chain dehydrogenase/reductase SDR  34.94 
 
 
269 aa  91.3  9e-18  Cellulomonas flavigena DSM 20109  Bacteria  normal  normal 
 
 
-
 
NC_011145  AnaeK_3912  short-chain dehydrogenase/reductase SDR  41.96 
 
 
266 aa  91.3  9e-18  Anaeromyxobacter sp. K  Bacteria  normal  n/a   
 
 
-
 
NC_009077  Mjls_0469  short-chain dehydrogenase/reductase SDR  32.47 
 
 
258 aa  91.3  9e-18  Mycobacterium sp. JLS  Bacteria  normal  normal 
 
 
-
 
Page 1 of 3    << first  < prev  1  2  3    next >  last >>