More than 300 homologs were found in PanDaTox collection
for query gene Pput_2703 on replicon NC_009512
Organism: Pseudomonas putida F1



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009512  Pput_2703  short-chain dehydrogenase/reductase SDR  100 
 
 
264 aa  526  1e-148  Pseudomonas putida F1  Bacteria  normal  normal 
 
 
-
 
NC_002947  PP_2989  short chain dehydrogenase/reductase family oxidoreductase  98.86 
 
 
264 aa  521  1e-147  Pseudomonas putida KT2440  Bacteria  normal  normal  0.0851531 
 
 
-
 
NC_010552  BamMC406_5270  short-chain dehydrogenase/reductase SDR  84.56 
 
 
262 aa  449  1e-125  Burkholderia ambifaria MC40-6  Bacteria  normal  normal 
 
 
-
 
NC_008391  Bamb_4735  short-chain dehydrogenase/reductase SDR  84.56 
 
 
262 aa  446  1.0000000000000001e-124  Burkholderia ambifaria AMMD  Bacteria  normal  normal 
 
 
-
 
NC_004578  PSPTO_1864  oxidoreductase, short chain dehydrogenase/reductase family  79.15 
 
 
262 aa  424  1e-118  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_007492  Pfl01_2478  Short-chain dehydrogenase/reductase SDR  75.1 
 
 
262 aa  409  1e-113  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal 
 
 
-
 
NC_007005  Psyr_3539  Short-chain dehydrogenase/reductase SDR  76.25 
 
 
262 aa  405  1.0000000000000001e-112  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal  0.0684522 
 
 
-
 
NC_009832  Spro_3183  short-chain dehydrogenase/reductase SDR  71.98 
 
 
260 aa  389  1e-107  Serratia proteamaculans 568  Bacteria  normal  normal 
 
 
-
 
NC_011071  Smal_2007  short-chain dehydrogenase/reductase SDR  76.83 
 
 
262 aa  384  1e-106  Stenotrophomonas maltophilia R551-3  Bacteria  normal  0.511264  normal 
 
 
-
 
NC_009436  Ent638_2278  short-chain dehydrogenase/reductase SDR  68.09 
 
 
260 aa  375  1e-103  Enterobacter sp. 638  Bacteria  normal  normal  0.161761 
 
 
-
 
NC_011663  Sbal223_2174  short-chain dehydrogenase/reductase SDR  68.34 
 
 
261 aa  367  1e-101  Shewanella baltica OS223  Bacteria  normal  0.30567  hitchhiker  0.00567391 
 
 
-
 
NC_012912  Dd1591_2059  short-chain dehydrogenase/reductase SDR  64.59 
 
 
260 aa  345  4e-94  Dickeya zeae Ech1591  Bacteria  normal  n/a   
 
 
-
 
NC_012912  Dd1591_3491  short-chain dehydrogenase/reductase SDR  63.71 
 
 
287 aa  333  1e-90  Dickeya zeae Ech1591  Bacteria  normal  0.210779  n/a   
 
 
-
 
NC_009439  Pmen_1100  short-chain dehydrogenase/reductase SDR  56.15 
 
 
264 aa  267  1e-70  Pseudomonas mendocina ymp  Bacteria  normal  0.576998  normal  0.0165353 
 
 
-
 
NC_009656  PSPA7_5551  putative short-chain dehydrogenase  58.5 
 
 
265 aa  266  4e-70  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_008463  PA14_63890  putative short-chain dehydrogenase  57.71 
 
 
265 aa  264  1e-69  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal 
 
 
-
 
NC_013421  Pecwa_2365  short-chain dehydrogenase/reductase SDR  51.38 
 
 
257 aa  259  4e-68  Pectobacterium wasabiae WPP163  Bacteria  normal  n/a   
 
 
-
 
NC_011365  Gdia_0995  short-chain dehydrogenase/reductase SDR  53.05 
 
 
267 aa  251  6e-66  Gluconacetobacter diazotrophicus PAl 5  Bacteria  normal  normal 
 
 
-
 
NC_007974  Rmet_4523  short-chain dehydrogenase/reductase SDR  50.98 
 
 
266 aa  251  7e-66  Cupriavidus metallidurans CH34  Bacteria  normal  0.642907  decreased coverage  0.0040913 
 
 
-
 
NC_010086  Bmul_4300  short-chain dehydrogenase/reductase SDR  48.64 
 
 
266 aa  247  2e-64  Burkholderia multivorans ATCC 17616  Bacteria  normal  0.498015  normal 
 
 
-
 
NC_007951  Bxe_A4474  putative short-chain dehydrogenase/reductase SDR  50.19 
 
 
270 aa  246  3e-64  Burkholderia xenovorans LB400  Bacteria  normal  hitchhiker  0.000662369 
 
 
-
 
NC_010338  Caul_3460  short-chain dehydrogenase/reductase SDR  51.91 
 
 
269 aa  245  4.9999999999999997e-64  Caulobacter sp. K31  Bacteria  normal  0.590645  normal 
 
 
-
 
NC_008391  Bamb_3723  short-chain dehydrogenase/reductase SDR  49.42 
 
 
266 aa  245  4.9999999999999997e-64  Burkholderia ambifaria AMMD  Bacteria  normal  0.662669  normal  0.858524 
 
 
-
 
NC_010515  Bcenmc03_3212  short-chain dehydrogenase/reductase SDR  49.03 
 
 
266 aa  244  9e-64  Burkholderia cenocepacia MC0-3  Bacteria  normal  0.177624  normal 
 
 
-
 
NC_008061  Bcen_4061  short-chain dehydrogenase/reductase SDR  49.03 
 
 
281 aa  244  9.999999999999999e-64  Burkholderia cenocepacia AU 1054  Bacteria  normal  0.786818  n/a   
 
 
-
 
NC_008543  Bcen2424_4305  short-chain dehydrogenase/reductase SDR  49.03 
 
 
281 aa  244  9.999999999999999e-64  Burkholderia cenocepacia HI2424  Bacteria  normal  normal  0.699263 
 
 
-
 
NC_007511  Bcep18194_B1706  Short-chain dehydrogenase/reductase SDR  49.03 
 
 
266 aa  243  3e-63  Burkholderia sp. 383  Bacteria  normal  0.951732  normal 
 
 
-
 
NC_010623  Bphy_4200  short-chain dehydrogenase/reductase SDR  48.46 
 
 
271 aa  240  2e-62  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_010681  Bphyt_3970  short-chain dehydrogenase/reductase SDR  49.04 
 
 
270 aa  240  2e-62  Burkholderia phytofirmans PsJN  Bacteria  normal  normal 
 
 
-
 
NC_007347  Reut_A1901  Short-chain dehydrogenase/reductase SDR  53.33 
 
 
266 aa  239  2.9999999999999997e-62  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_010552  BamMC406_4199  short-chain dehydrogenase/reductase SDR  48.64 
 
 
266 aa  238  5e-62  Burkholderia ambifaria MC40-6  Bacteria  normal  0.308915  normal  0.0922746 
 
 
-
 
NC_011666  Msil_0129  short-chain dehydrogenase/reductase SDR  50 
 
 
271 aa  234  1.0000000000000001e-60  Methylocella silvestris BL2  Bacteria  n/a    normal 
 
 
-
 
NC_009436  Ent638_1512  short-chain dehydrogenase/reductase SDR  49.81 
 
 
264 aa  234  2.0000000000000002e-60  Enterobacter sp. 638  Bacteria  normal  normal  0.360234 
 
 
-
 
NC_010322  PputGB1_3070  short-chain dehydrogenase/reductase SDR  47.47 
 
 
265 aa  230  2e-59  Pseudomonas putida GB-1  Bacteria  normal  0.0355963  normal 
 
 
-
 
NC_007492  Pfl01_4040  Short-chain dehydrogenase/reductase SDR  51.74 
 
 
264 aa  227  1e-58  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.128419  normal  0.923094 
 
 
-
 
NC_009720  Xaut_1294  short-chain dehydrogenase/reductase SDR  48.08 
 
 
266 aa  223  3e-57  Xanthobacter autotrophicus Py2  Bacteria  normal  normal 
 
 
-
 
NC_009485  BBta_3264  putative oxidoreductase protein  48.26 
 
 
264 aa  223  3e-57  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.724633  normal 
 
 
-
 
NC_012850  Rleg_3582  short-chain dehydrogenase/reductase SDR  46.51 
 
 
265 aa  219  3.9999999999999997e-56  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.15353 
 
 
-
 
NC_011666  Msil_0380  short-chain dehydrogenase/reductase SDR  45.1 
 
 
265 aa  217  1e-55  Methylocella silvestris BL2  Bacteria  n/a    normal  0.453235 
 
 
-
 
NC_007492  Pfl01_2716  Short-chain dehydrogenase/reductase SDR  44.19 
 
 
265 aa  215  5e-55  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal  0.490599 
 
 
-
 
NC_008048  Sala_0082  short-chain dehydrogenase/reductase SDR  43.63 
 
 
269 aa  213  2.9999999999999995e-54  Sphingopyxis alaskensis RB2256  Bacteria  normal  normal 
 
 
-
 
NC_010505  Mrad2831_1275  short-chain dehydrogenase/reductase SDR  48.11 
 
 
271 aa  211  7e-54  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal 
 
 
-
 
NC_011894  Mnod_1035  short-chain dehydrogenase/reductase SDR  45.35 
 
 
270 aa  210  2e-53  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.0312813  n/a   
 
 
-
 
NC_011368  Rleg2_5185  short-chain dehydrogenase/reductase SDR  44.23 
 
 
285 aa  209  5e-53  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal 
 
 
-
 
NC_011757  Mchl_0153  short-chain dehydrogenase/reductase SDR  46.88 
 
 
262 aa  207  1e-52  Methylobacterium chloromethanicum CM4  Bacteria  normal  0.418257  normal  0.135019 
 
 
-
 
NC_009621  Smed_5531  short-chain dehydrogenase/reductase SDR  44.19 
 
 
269 aa  206  3e-52  Sinorhizobium medicae WSM419  Bacteria  normal  0.356237  normal  0.14087 
 
 
-
 
NC_010725  Mpop_0718  short-chain dehydrogenase/reductase SDR  47.1 
 
 
263 aa  206  4e-52  Methylobacterium populi BJ001  Bacteria  normal  0.520585  normal 
 
 
-
 
NC_012858  Rleg_6849  short-chain dehydrogenase/reductase SDR  43.77 
 
 
269 aa  205  7e-52  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.674583 
 
 
-
 
NC_010172  Mext_0209  short-chain dehydrogenase/reductase SDR  45.95 
 
 
262 aa  203  3e-51  Methylobacterium extorquens PA1  Bacteria  normal  0.128983  normal 
 
 
-
 
NC_010505  Mrad2831_4718  short-chain dehydrogenase/reductase SDR  45.04 
 
 
270 aa  199  3e-50  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal 
 
 
-
 
NC_010511  M446_3566  short-chain dehydrogenase/reductase SDR  47.13 
 
 
269 aa  196  2.0000000000000003e-49  Methylobacterium sp. 4-46  Bacteria  normal  normal  0.138362 
 
 
-
 
NC_012792  Vapar_5551  short-chain dehydrogenase/reductase SDR  43.46 
 
 
266 aa  192  7e-48  Variovorax paradoxus S110  Bacteria  normal  0.614615  n/a   
 
 
-
 
NC_007948  Bpro_2349  short-chain dehydrogenase/reductase SDR  42.31 
 
 
266 aa  191  9e-48  Polaromonas sp. JS666  Bacteria  normal  0.341044  normal 
 
 
-
 
NC_012850  Rleg_0887  short-chain dehydrogenase/reductase SDR  41.47 
 
 
266 aa  190  2e-47  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal 
 
 
-
 
NC_007908  Rfer_0308  short-chain dehydrogenase/reductase SDR  41.92 
 
 
266 aa  186  4e-46  Rhodoferax ferrireducens T118  Bacteria  normal  0.130238  n/a   
 
 
-
 
NC_010505  Mrad2831_4444  short-chain dehydrogenase/reductase SDR  51.78 
 
 
264 aa  179  4e-44  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.241971  normal 
 
 
-
 
NC_010338  Caul_0512  short-chain dehydrogenase/reductase SDR  44 
 
 
269 aa  175  7e-43  Caulobacter sp. K31  Bacteria  normal  normal 
 
 
-
 
NC_009485  BBta_5145  putative Short-chain dehydrogenase/reductase SDR  39.45 
 
 
267 aa  168  7e-41  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.645114  normal  0.0551529 
 
 
-
 
NC_009621  Smed_5566  short-chain dehydrogenase/reductase SDR  44.56 
 
 
199 aa  161  1e-38  Sinorhizobium medicae WSM419  Bacteria  normal  normal  0.0343056 
 
 
-
 
NC_013169  Ksed_05610  short-chain dehydrogenase of unknown substrate specificity  43.29 
 
 
296 aa  161  1e-38  Kytococcus sedentarius DSM 20547  Bacteria  normal  0.100134  normal  0.886117 
 
 
-
 
NC_007511  Bcep18194_B0958  Short-chain dehydrogenase/reductase SDR  38.37 
 
 
263 aa  160  2e-38  Burkholderia sp. 383  Bacteria  normal  normal 
 
 
-
 
NC_013093  Amir_6941  short-chain dehydrogenase/reductase SDR  40.89 
 
 
259 aa  152  4e-36  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_013510  Tcur_1833  short-chain dehydrogenase/reductase SDR  40 
 
 
252 aa  150  3e-35  Thermomonospora curvata DSM 43183  Bacteria  normal  0.092001  n/a   
 
 
-
 
NC_008699  Noca_1466  short-chain dehydrogenase/reductase SDR  42.04 
 
 
253 aa  150  3e-35  Nocardioides sp. JS614  Bacteria  normal  0.0605466  n/a   
 
 
-
 
NC_009077  Mjls_0469  short-chain dehydrogenase/reductase SDR  41.59 
 
 
258 aa  149  4e-35  Mycobacterium sp. JLS  Bacteria  normal  normal 
 
 
-
 
NC_008146  Mmcs_0480  short-chain dehydrogenase/reductase SDR  41.15 
 
 
258 aa  147  1.0000000000000001e-34  Mycobacterium sp. MCS  Bacteria  normal  n/a   
 
 
-
 
NC_008705  Mkms_0491  short-chain dehydrogenase/reductase SDR  41.15 
 
 
258 aa  147  1.0000000000000001e-34  Mycobacterium sp. KMS  Bacteria  normal  normal  0.354983 
 
 
-
 
NC_008578  Acel_2122  short-chain dehydrogenase/reductase SDR  41.96 
 
 
249 aa  147  2.0000000000000003e-34  Acidothermus cellulolyticus 11B  Bacteria  normal  normal  0.617745 
 
 
-
 
NC_010002  Daci_5779  short-chain dehydrogenase/reductase SDR  39.46 
 
 
268 aa  146  4.0000000000000006e-34  Delftia acidovorans SPH-1  Bacteria  normal  hitchhiker  0.00272439 
 
 
-
 
NC_009656  PSPA7_0799  short chain dehydrogenase/reductase family oxidoreductase  41.52 
 
 
266 aa  145  8.000000000000001e-34  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_008463  PA14_08440  putative short chain alcohol dehydrogenase  41.07 
 
 
266 aa  144  1e-33  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  hitchhiker  0.0000000229698 
 
 
-
 
NC_009718  Fnod_0523  short-chain dehydrogenase/reductase SDR  36.82 
 
 
255 aa  143  2e-33  Fervidobacterium nodosum Rt17-B1  Bacteria  normal  n/a   
 
 
-
 
NC_013131  Caci_8914  short-chain dehydrogenase/reductase SDR  44.72 
 
 
255 aa  144  2e-33  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal  0.505504 
 
 
-
 
NC_009338  Mflv_0244  short-chain dehydrogenase/reductase SDR  40.43 
 
 
258 aa  142  7e-33  Mycobacterium gilvum PYR-GCK  Bacteria  normal  normal 
 
 
-
 
NC_013159  Svir_38500  short-chain dehydrogenase of unknown substrate specificity  40.99 
 
 
253 aa  141  9.999999999999999e-33  Saccharomonospora viridis DSM 43017  Bacteria  normal  normal 
 
 
-
 
NC_013510  Tcur_3579  short-chain dehydrogenase/reductase SDR  42.44 
 
 
258 aa  140  1.9999999999999998e-32  Thermomonospora curvata DSM 43183  Bacteria  normal  0.392131  n/a   
 
 
-
 
NC_013440  Hoch_2231  short-chain dehydrogenase/reductase SDR  41.29 
 
 
263 aa  140  3e-32  Haliangium ochraceum DSM 14365  Bacteria  normal  0.19807  normal 
 
 
-
 
NC_009664  Krad_1004  short-chain dehydrogenase/reductase SDR  39.42 
 
 
276 aa  137  2e-31  Kineococcus radiotolerans SRS30216  Bacteria  normal  0.118299  decreased coverage  0.00158374 
 
 
-
 
NC_014165  Tbis_2195  short-chain dehydrogenase/reductase SDR  37.28 
 
 
250 aa  137  2e-31  Thermobispora bispora DSM 43833  Bacteria  normal  normal  0.92313 
 
 
-
 
NC_009953  Sare_0129  short-chain dehydrogenase/reductase SDR  38.29 
 
 
269 aa  136  4e-31  Salinispora arenicola CNS-205  Bacteria  normal  decreased coverage  0.0000288771 
 
 
-
 
NC_009338  Mflv_3538  short-chain dehydrogenase/reductase SDR  38.7 
 
 
259 aa  135  5e-31  Mycobacterium gilvum PYR-GCK  Bacteria  normal  0.0177311  normal  0.151964 
 
 
-
 
NC_009565  TBFG_11577  ketoacyl reductase  45.45 
 
 
267 aa  135  6.0000000000000005e-31  Mycobacterium tuberculosis F11  Bacteria  normal  normal 
 
 
-
 
NC_009664  Krad_2466  short-chain dehydrogenase/reductase SDR  36.3 
 
 
283 aa  135  6.0000000000000005e-31  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal 
 
 
-
 
NC_004578  PSPTO_0601  oxidoreductase, short chain dehydrogenase/reductase family  39.37 
 
 
258 aa  135  9e-31  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_007512  Plut_1969  short chain dehydrogenase/reductase family oxidoreductase  37.66 
 
 
260 aa  134  9.999999999999999e-31  Chlorobium luteolum DSM 273  Bacteria  normal  normal 
 
 
-
 
NC_009439  Pmen_3938  short-chain dehydrogenase/reductase SDR  38.39 
 
 
262 aa  134  9.999999999999999e-31  Pseudomonas mendocina ymp  Bacteria  normal  normal 
 
 
-
 
NC_007005  Psyr_4572  Short-chain dehydrogenase/reductase SDR  43.52 
 
 
258 aa  134  1.9999999999999998e-30  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal 
 
 
-
 
NC_009675  Anae109_3974  short-chain dehydrogenase/reductase SDR  37.55 
 
 
264 aa  134  1.9999999999999998e-30  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  0.036497  normal  0.609933 
 
 
-
 
NC_012669  Bcav_3647  short-chain dehydrogenase/reductase SDR  40 
 
 
255 aa  133  1.9999999999999998e-30  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal 
 
 
-
 
NC_013595  Sros_6514  short-chain dehydrogenase/reductase SDR  39.5 
 
 
250 aa  132  6e-30  Streptosporangium roseum DSM 43021  Bacteria  normal  0.757683  normal  0.645684 
 
 
-
 
NC_009380  Strop_0124  short-chain dehydrogenase/reductase SDR  36.84 
 
 
269 aa  132  6e-30  Salinispora tropica CNB-440  Bacteria  normal  normal 
 
 
-
 
NC_008312  Tery_1795  short-chain dehydrogenase/reductase SDR  40 
 
 
264 aa  132  7.999999999999999e-30  Trichodesmium erythraeum IMS101  Bacteria  normal  0.711928  normal 
 
 
-
 
NC_011059  Paes_0281  short-chain dehydrogenase/reductase SDR  34.22 
 
 
255 aa  131  1.0000000000000001e-29  Prosthecochloris aestuarii DSM 271  Bacteria  hitchhiker  0.000634692  hitchhiker  0.00117931 
 
 
-
 
NC_013517  Sterm_2330  short-chain dehydrogenase/reductase SDR  39.38 
 
 
257 aa  130  2.0000000000000002e-29  Sebaldella termitidis ATCC 33386  Bacteria  hitchhiker  0.000620196  n/a   
 
 
-
 
NC_013235  Namu_0089  short-chain dehydrogenase/reductase SDR  40.4 
 
 
264 aa  130  2.0000000000000002e-29  Nakamurella multipartita DSM 44233  Bacteria  normal  normal 
 
 
-
 
NC_013174  Jden_2426  short-chain dehydrogenase/reductase SDR  38.77 
 
 
269 aa  129  4.0000000000000003e-29  Jonesia denitrificans DSM 20603  Bacteria  normal  normal  0.316114 
 
 
-
 
NC_008726  Mvan_0661  short-chain dehydrogenase/reductase SDR  39.13 
 
 
258 aa  129  4.0000000000000003e-29  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  normal  0.381329 
 
 
-
 
NC_013947  Snas_6420  short-chain dehydrogenase/reductase SDR  41.07 
 
 
259 aa  129  4.0000000000000003e-29  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal 
 
 
-
 
NC_013510  Tcur_2692  short-chain dehydrogenase/reductase SDR  40.76 
 
 
267 aa  129  6e-29  Thermomonospora curvata DSM 43183  Bacteria  decreased coverage  0.0000430049  n/a   
 
 
-
 
NC_008146  Mmcs_0188  short-chain dehydrogenase/reductase SDR  38.86 
 
 
262 aa  128  9.000000000000001e-29  Mycobacterium sp. MCS  Bacteria  normal  n/a   
 
 
-
 
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