More than 300 homologs were found in PanDaTox collection
for query gene Smed_5531 on replicon NC_009621
Organism: Sinorhizobium medicae WSM419



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009621  Smed_5531  short-chain dehydrogenase/reductase SDR  100 
 
 
269 aa  540  9.999999999999999e-153  Sinorhizobium medicae WSM419  Bacteria  normal  0.356237  normal  0.14087 
 
 
-
 
NC_012858  Rleg_6849  short-chain dehydrogenase/reductase SDR  82.84 
 
 
269 aa  456  1e-127  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.674583 
 
 
-
 
NC_011368  Rleg2_5185  short-chain dehydrogenase/reductase SDR  62.84 
 
 
285 aa  333  2e-90  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal 
 
 
-
 
NC_012850  Rleg_3582  short-chain dehydrogenase/reductase SDR  59.85 
 
 
265 aa  321  9.999999999999999e-87  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.15353 
 
 
-
 
NC_011666  Msil_0129  short-chain dehydrogenase/reductase SDR  60.61 
 
 
271 aa  314  9.999999999999999e-85  Methylocella silvestris BL2  Bacteria  n/a    normal 
 
 
-
 
NC_010623  Bphy_4200  short-chain dehydrogenase/reductase SDR  59.23 
 
 
271 aa  307  1.0000000000000001e-82  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_011894  Mnod_1035  short-chain dehydrogenase/reductase SDR  58.17 
 
 
270 aa  306  2.0000000000000002e-82  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.0312813  n/a   
 
 
-
 
NC_007951  Bxe_A4474  putative short-chain dehydrogenase/reductase SDR  57.09 
 
 
270 aa  304  1.0000000000000001e-81  Burkholderia xenovorans LB400  Bacteria  normal  hitchhiker  0.000662369 
 
 
-
 
NC_010515  Bcenmc03_3212  short-chain dehydrogenase/reductase SDR  58.02 
 
 
266 aa  303  2.0000000000000002e-81  Burkholderia cenocepacia MC0-3  Bacteria  normal  0.177624  normal 
 
 
-
 
NC_010681  Bphyt_3970  short-chain dehydrogenase/reductase SDR  56.93 
 
 
270 aa  302  3.0000000000000004e-81  Burkholderia phytofirmans PsJN  Bacteria  normal  normal 
 
 
-
 
NC_008061  Bcen_4061  short-chain dehydrogenase/reductase SDR  57.63 
 
 
281 aa  302  3.0000000000000004e-81  Burkholderia cenocepacia AU 1054  Bacteria  normal  0.786818  n/a   
 
 
-
 
NC_008543  Bcen2424_4305  short-chain dehydrogenase/reductase SDR  57.63 
 
 
281 aa  302  3.0000000000000004e-81  Burkholderia cenocepacia HI2424  Bacteria  normal  normal  0.699263 
 
 
-
 
NC_007511  Bcep18194_B1706  Short-chain dehydrogenase/reductase SDR  57.25 
 
 
266 aa  297  1e-79  Burkholderia sp. 383  Bacteria  normal  0.951732  normal 
 
 
-
 
NC_008048  Sala_0082  short-chain dehydrogenase/reductase SDR  58.33 
 
 
269 aa  297  1e-79  Sphingopyxis alaskensis RB2256  Bacteria  normal  normal 
 
 
-
 
NC_008391  Bamb_3723  short-chain dehydrogenase/reductase SDR  56.11 
 
 
266 aa  295  4e-79  Burkholderia ambifaria AMMD  Bacteria  normal  0.662669  normal  0.858524 
 
 
-
 
NC_007974  Rmet_4523  short-chain dehydrogenase/reductase SDR  58.78 
 
 
266 aa  295  6e-79  Cupriavidus metallidurans CH34  Bacteria  normal  0.642907  decreased coverage  0.0040913 
 
 
-
 
NC_010511  M446_3566  short-chain dehydrogenase/reductase SDR  61.05 
 
 
269 aa  295  7e-79  Methylobacterium sp. 4-46  Bacteria  normal  normal  0.138362 
 
 
-
 
NC_010086  Bmul_4300  short-chain dehydrogenase/reductase SDR  55.73 
 
 
266 aa  293  3e-78  Burkholderia multivorans ATCC 17616  Bacteria  normal  0.498015  normal 
 
 
-
 
NC_010552  BamMC406_4199  short-chain dehydrogenase/reductase SDR  55.73 
 
 
266 aa  291  1e-77  Burkholderia ambifaria MC40-6  Bacteria  normal  0.308915  normal  0.0922746 
 
 
-
 
NC_009485  BBta_3264  putative oxidoreductase protein  53.82 
 
 
264 aa  278  5e-74  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.724633  normal 
 
 
-
 
NC_010505  Mrad2831_4718  short-chain dehydrogenase/reductase SDR  53.82 
 
 
270 aa  278  7e-74  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal 
 
 
-
 
NC_007347  Reut_A1901  Short-chain dehydrogenase/reductase SDR  59.38 
 
 
266 aa  278  9e-74  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_007492  Pfl01_2716  Short-chain dehydrogenase/reductase SDR  54.75 
 
 
265 aa  275  4e-73  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal  0.490599 
 
 
-
 
NC_010322  PputGB1_3070  short-chain dehydrogenase/reductase SDR  54.92 
 
 
265 aa  273  2.0000000000000002e-72  Pseudomonas putida GB-1  Bacteria  normal  0.0355963  normal 
 
 
-
 
NC_010725  Mpop_0718  short-chain dehydrogenase/reductase SDR  55.25 
 
 
263 aa  267  1e-70  Methylobacterium populi BJ001  Bacteria  normal  0.520585  normal 
 
 
-
 
NC_009720  Xaut_1294  short-chain dehydrogenase/reductase SDR  54.37 
 
 
266 aa  266  2.9999999999999995e-70  Xanthobacter autotrophicus Py2  Bacteria  normal  normal 
 
 
-
 
NC_010505  Mrad2831_1275  short-chain dehydrogenase/reductase SDR  56.06 
 
 
271 aa  265  5e-70  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal 
 
 
-
 
NC_011757  Mchl_0153  short-chain dehydrogenase/reductase SDR  54.05 
 
 
262 aa  265  7e-70  Methylobacterium chloromethanicum CM4  Bacteria  normal  0.418257  normal  0.135019 
 
 
-
 
NC_009656  PSPA7_5551  putative short-chain dehydrogenase  52.51 
 
 
265 aa  263  2e-69  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_010172  Mext_0209  short-chain dehydrogenase/reductase SDR  53.67 
 
 
262 aa  261  6.999999999999999e-69  Methylobacterium extorquens PA1  Bacteria  normal  0.128983  normal 
 
 
-
 
NC_008463  PA14_63890  putative short-chain dehydrogenase  51.35 
 
 
265 aa  260  2e-68  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal 
 
 
-
 
NC_011666  Msil_0380  short-chain dehydrogenase/reductase SDR  50 
 
 
265 aa  254  1.0000000000000001e-66  Methylocella silvestris BL2  Bacteria  n/a    normal  0.453235 
 
 
-
 
NC_010338  Caul_3460  short-chain dehydrogenase/reductase SDR  51.92 
 
 
269 aa  243  3e-63  Caulobacter sp. K31  Bacteria  normal  0.590645  normal 
 
 
-
 
NC_007492  Pfl01_4040  Short-chain dehydrogenase/reductase SDR  49.81 
 
 
264 aa  236  4e-61  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.128419  normal  0.923094 
 
 
-
 
NC_009439  Pmen_1100  short-chain dehydrogenase/reductase SDR  50.39 
 
 
264 aa  235  6e-61  Pseudomonas mendocina ymp  Bacteria  normal  0.576998  normal  0.0165353 
 
 
-
 
NC_007908  Rfer_0308  short-chain dehydrogenase/reductase SDR  46.33 
 
 
266 aa  227  1e-58  Rhodoferax ferrireducens T118  Bacteria  normal  0.130238  n/a   
 
 
-
 
NC_007948  Bpro_2349  short-chain dehydrogenase/reductase SDR  45.95 
 
 
266 aa  226  4e-58  Polaromonas sp. JS666  Bacteria  normal  0.341044  normal 
 
 
-
 
NC_009436  Ent638_1512  short-chain dehydrogenase/reductase SDR  47.47 
 
 
264 aa  224  8e-58  Enterobacter sp. 638  Bacteria  normal  normal  0.360234 
 
 
-
 
NC_012850  Rleg_0887  short-chain dehydrogenase/reductase SDR  45.53 
 
 
266 aa  221  9.999999999999999e-57  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal 
 
 
-
 
NC_012792  Vapar_5551  short-chain dehydrogenase/reductase SDR  45.56 
 
 
266 aa  221  9.999999999999999e-57  Variovorax paradoxus S110  Bacteria  normal  0.614615  n/a   
 
 
-
 
NC_011365  Gdia_0995  short-chain dehydrogenase/reductase SDR  43.73 
 
 
267 aa  219  3e-56  Gluconacetobacter diazotrophicus PAl 5  Bacteria  normal  normal 
 
 
-
 
NC_008391  Bamb_4735  short-chain dehydrogenase/reductase SDR  45.56 
 
 
262 aa  215  7e-55  Burkholderia ambifaria AMMD  Bacteria  normal  normal 
 
 
-
 
NC_009485  BBta_5145  putative Short-chain dehydrogenase/reductase SDR  45.1 
 
 
267 aa  214  9e-55  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.645114  normal  0.0551529 
 
 
-
 
NC_010552  BamMC406_5270  short-chain dehydrogenase/reductase SDR  45.17 
 
 
262 aa  214  9.999999999999999e-55  Burkholderia ambifaria MC40-6  Bacteria  normal  normal 
 
 
-
 
NC_009832  Spro_3183  short-chain dehydrogenase/reductase SDR  43.41 
 
 
260 aa  211  1e-53  Serratia proteamaculans 568  Bacteria  normal  normal 
 
 
-
 
NC_002947  PP_2989  short chain dehydrogenase/reductase family oxidoreductase  44.06 
 
 
264 aa  206  2e-52  Pseudomonas putida KT2440  Bacteria  normal  normal  0.0851531 
 
 
-
 
NC_004578  PSPTO_1864  oxidoreductase, short chain dehydrogenase/reductase family  44.92 
 
 
262 aa  206  3e-52  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_009512  Pput_2703  short-chain dehydrogenase/reductase SDR  44.19 
 
 
264 aa  206  3e-52  Pseudomonas putida F1  Bacteria  normal  normal 
 
 
-
 
NC_009621  Smed_5566  short-chain dehydrogenase/reductase SDR  53.09 
 
 
199 aa  204  1e-51  Sinorhizobium medicae WSM419  Bacteria  normal  normal  0.0343056 
 
 
-
 
NC_009436  Ent638_2278  short-chain dehydrogenase/reductase SDR  43.41 
 
 
260 aa  201  9.999999999999999e-51  Enterobacter sp. 638  Bacteria  normal  normal  0.161761 
 
 
-
 
NC_007492  Pfl01_2478  Short-chain dehydrogenase/reductase SDR  43.8 
 
 
262 aa  200  1.9999999999999998e-50  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal 
 
 
-
 
NC_012912  Dd1591_2059  short-chain dehydrogenase/reductase SDR  41.18 
 
 
260 aa  199  3e-50  Dickeya zeae Ech1591  Bacteria  normal  n/a   
 
 
-
 
NC_007005  Psyr_3539  Short-chain dehydrogenase/reductase SDR  41.41 
 
 
262 aa  199  3e-50  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal  0.0684522 
 
 
-
 
NC_010002  Daci_5779  short-chain dehydrogenase/reductase SDR  44.4 
 
 
268 aa  199  6e-50  Delftia acidovorans SPH-1  Bacteria  normal  hitchhiker  0.00272439 
 
 
-
 
NC_010338  Caul_0512  short-chain dehydrogenase/reductase SDR  42.64 
 
 
269 aa  198  7e-50  Caulobacter sp. K31  Bacteria  normal  normal 
 
 
-
 
NC_011663  Sbal223_2174  short-chain dehydrogenase/reductase SDR  42.35 
 
 
261 aa  197  2.0000000000000003e-49  Shewanella baltica OS223  Bacteria  normal  0.30567  hitchhiker  0.00567391 
 
 
-
 
NC_012912  Dd1591_3491  short-chain dehydrogenase/reductase SDR  42.15 
 
 
287 aa  192  4e-48  Dickeya zeae Ech1591  Bacteria  normal  0.210779  n/a   
 
 
-
 
NC_010505  Mrad2831_4444  short-chain dehydrogenase/reductase SDR  49.03 
 
 
264 aa  192  4e-48  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.241971  normal 
 
 
-
 
NC_013421  Pecwa_2365  short-chain dehydrogenase/reductase SDR  43.53 
 
 
257 aa  190  2e-47  Pectobacterium wasabiae WPP163  Bacteria  normal  n/a   
 
 
-
 
NC_011071  Smal_2007  short-chain dehydrogenase/reductase SDR  43.36 
 
 
262 aa  182  5.0000000000000004e-45  Stenotrophomonas maltophilia R551-3  Bacteria  normal  0.511264  normal 
 
 
-
 
NC_007511  Bcep18194_B0958  Short-chain dehydrogenase/reductase SDR  40.31 
 
 
263 aa  181  1e-44  Burkholderia sp. 383  Bacteria  normal  normal 
 
 
-
 
NC_009664  Krad_2466  short-chain dehydrogenase/reductase SDR  38.58 
 
 
283 aa  153  2.9999999999999998e-36  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal 
 
 
-
 
NC_009718  Fnod_0523  short-chain dehydrogenase/reductase SDR  37.28 
 
 
255 aa  149  4e-35  Fervidobacterium nodosum Rt17-B1  Bacteria  normal  n/a   
 
 
-
 
NC_009953  Sare_0129  short-chain dehydrogenase/reductase SDR  37.22 
 
 
269 aa  143  4e-33  Salinispora arenicola CNS-205  Bacteria  normal  decreased coverage  0.0000288771 
 
 
-
 
NC_009380  Strop_0124  short-chain dehydrogenase/reductase SDR  36.32 
 
 
269 aa  142  7e-33  Salinispora tropica CNB-440  Bacteria  normal  normal 
 
 
-
 
NC_013159  Svir_38500  short-chain dehydrogenase of unknown substrate specificity  40 
 
 
253 aa  141  9.999999999999999e-33  Saccharomonospora viridis DSM 43017  Bacteria  normal  normal 
 
 
-
 
NC_013510  Tcur_1833  short-chain dehydrogenase/reductase SDR  35.06 
 
 
252 aa  135  5e-31  Thermomonospora curvata DSM 43183  Bacteria  normal  0.092001  n/a   
 
 
-
 
NC_013169  Ksed_05610  short-chain dehydrogenase of unknown substrate specificity  37.89 
 
 
296 aa  134  9.999999999999999e-31  Kytococcus sedentarius DSM 20547  Bacteria  normal  0.100134  normal  0.886117 
 
 
-
 
NC_009656  PSPA7_0799  short chain dehydrogenase/reductase family oxidoreductase  35.53 
 
 
266 aa  133  3e-30  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_008463  PA14_08440  putative short chain alcohol dehydrogenase  35.09 
 
 
266 aa  133  3e-30  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  hitchhiker  0.0000000229698 
 
 
-
 
NC_009439  Pmen_3938  short-chain dehydrogenase/reductase SDR  35.53 
 
 
262 aa  130  3e-29  Pseudomonas mendocina ymp  Bacteria  normal  normal 
 
 
-
 
NC_013510  Tcur_3579  short-chain dehydrogenase/reductase SDR  38.84 
 
 
258 aa  130  3e-29  Thermomonospora curvata DSM 43183  Bacteria  normal  0.392131  n/a   
 
 
-
 
NC_014148  Plim_1352  short-chain dehydrogenase/reductase SDR  35.32 
 
 
271 aa  129  4.0000000000000003e-29  Planctomyces limnophilus DSM 3776  Bacteria  normal  0.708878  n/a   
 
 
-
 
NC_013093  Amir_6941  short-chain dehydrogenase/reductase SDR  34.67 
 
 
259 aa  128  8.000000000000001e-29  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_007492  Pfl01_5106  Short-chain dehydrogenase/reductase SDR  34.31 
 
 
262 aa  128  1.0000000000000001e-28  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.311622  normal  0.753041 
 
 
-
 
NC_013730  Slin_0497  short-chain dehydrogenase/reductase SDR  40 
 
 
360 aa  127  2.0000000000000002e-28  Spirosoma linguale DSM 74  Bacteria  normal  normal 
 
 
-
 
NC_013522  Taci_1655  short-chain dehydrogenase/reductase SDR  35.24 
 
 
272 aa  127  2.0000000000000002e-28  Thermanaerovibrio acidaminovorans DSM 6589  Bacteria  normal  n/a   
 
 
-
 
NC_012669  Bcav_3647  short-chain dehydrogenase/reductase SDR  37.11 
 
 
255 aa  125  5e-28  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal 
 
 
-
 
NC_009338  Mflv_3538  short-chain dehydrogenase/reductase SDR  34.94 
 
 
259 aa  125  6e-28  Mycobacterium gilvum PYR-GCK  Bacteria  normal  0.0177311  normal  0.151964 
 
 
-
 
NC_014165  Tbis_2195  short-chain dehydrogenase/reductase SDR  34.67 
 
 
250 aa  125  1e-27  Thermobispora bispora DSM 43833  Bacteria  normal  normal  0.92313 
 
 
-
 
NC_013595  Sros_6514  short-chain dehydrogenase/reductase SDR  37.17 
 
 
250 aa  124  1e-27  Streptosporangium roseum DSM 43021  Bacteria  normal  0.757683  normal  0.645684 
 
 
-
 
NC_013093  Amir_2216  short-chain dehydrogenase/reductase SDR  37.17 
 
 
266 aa  124  2e-27  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_013131  Caci_8914  short-chain dehydrogenase/reductase SDR  38.05 
 
 
255 aa  122  5e-27  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal  0.505504 
 
 
-
 
NC_014151  Cfla_2979  short-chain dehydrogenase/reductase SDR  36.96 
 
 
269 aa  121  9.999999999999999e-27  Cellulomonas flavigena DSM 20109  Bacteria  normal  normal 
 
 
-
 
NC_008312  Tery_1795  short-chain dehydrogenase/reductase SDR  40.21 
 
 
264 aa  121  9.999999999999999e-27  Trichodesmium erythraeum IMS101  Bacteria  normal  0.711928  normal 
 
 
-
 
NC_013131  Caci_6716  short-chain dehydrogenase/reductase SDR  33.74 
 
 
259 aa  120  1.9999999999999998e-26  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.543445  normal 
 
 
-
 
NC_009664  Krad_2814  short-chain dehydrogenase/reductase SDR  40.19 
 
 
260 aa  120  3e-26  Kineococcus radiotolerans SRS30216  Bacteria  normal  0.563613  normal 
 
 
-
 
NC_007413  Ava_1011  Short-chain dehydrogenase/reductase SDR  36.2 
 
 
258 aa  117  9.999999999999999e-26  Anabaena variabilis ATCC 29413  Bacteria  normal  0.968961  hitchhiker  0.00922057 
 
 
-
 
NC_009921  Franean1_6469  short-chain dehydrogenase/reductase SDR  37.92 
 
 
263 aa  117  1.9999999999999998e-25  Frankia sp. EAN1pec  Bacteria  normal  normal  0.0477636 
 
 
-
 
NC_008726  Mvan_3324  short-chain dehydrogenase/reductase SDR  36.24 
 
 
269 aa  117  1.9999999999999998e-25  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  normal  0.377978 
 
 
-
 
NC_013517  Sterm_2330  short-chain dehydrogenase/reductase SDR  32.9 
 
 
257 aa  116  3e-25  Sebaldella termitidis ATCC 33386  Bacteria  hitchhiker  0.000620196  n/a   
 
 
-
 
NC_008578  Acel_2122  short-chain dehydrogenase/reductase SDR  34.25 
 
 
249 aa  116  3e-25  Acidothermus cellulolyticus 11B  Bacteria  normal  normal  0.617745 
 
 
-
 
NC_009953  Sare_1619  short-chain dehydrogenase/reductase SDR  41.54 
 
 
271 aa  116  3.9999999999999997e-25  Salinispora arenicola CNS-205  Bacteria  normal  normal  0.61951 
 
 
-
 
NC_013235  Namu_5163  short-chain dehydrogenase/reductase SDR  34.22 
 
 
258 aa  115  6e-25  Nakamurella multipartita DSM 44233  Bacteria  normal  normal 
 
 
-
 
NC_013172  Bfae_25790  short-chain dehydrogenase of unknown substrate specificity  36.56 
 
 
282 aa  115  6e-25  Brachybacterium faecium DSM 4810  Bacteria  normal  n/a   
 
 
-
 
NC_013132  Cpin_4109  short-chain dehydrogenase/reductase SDR  34.36 
 
 
269 aa  115  6.9999999999999995e-25  Chitinophaga pinensis DSM 2588  Bacteria  normal  hitchhiker  0.00421935 
 
 
-
 
NC_007777  Francci3_0351  short-chain dehydrogenase/reductase SDR  35.75 
 
 
291 aa  115  7.999999999999999e-25  Frankia sp. CcI3  Bacteria  normal  normal 
 
 
-
 
NC_011726  PCC8801_0140  short-chain dehydrogenase/reductase SDR  38.02 
 
 
261 aa  115  7.999999999999999e-25  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_008146  Mmcs_0480  short-chain dehydrogenase/reductase SDR  34.54 
 
 
258 aa  115  1.0000000000000001e-24  Mycobacterium sp. MCS  Bacteria  normal  n/a   
 
 
-
 
NC_008705  Mkms_0491  short-chain dehydrogenase/reductase SDR  34.54 
 
 
258 aa  115  1.0000000000000001e-24  Mycobacterium sp. KMS  Bacteria  normal  normal  0.354983 
 
 
-
 
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