More than 300 homologs were found in PanDaTox collection
for query gene Krad_1004 on replicon NC_009664
Organism: Kineococcus radiotolerans SRS30216



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009664  Krad_1004  short-chain dehydrogenase/reductase SDR  100 
 
 
276 aa  540  9.999999999999999e-153  Kineococcus radiotolerans SRS30216  Bacteria  normal  0.118299  decreased coverage  0.00158374 
 
 
-
 
NC_012669  Bcav_3647  short-chain dehydrogenase/reductase SDR  56.35 
 
 
255 aa  234  1.0000000000000001e-60  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal 
 
 
-
 
NC_014151  Cfla_2979  short-chain dehydrogenase/reductase SDR  57.85 
 
 
269 aa  232  4.0000000000000004e-60  Cellulomonas flavigena DSM 20109  Bacteria  normal  normal 
 
 
-
 
NC_013521  Sked_35320  short-chain dehydrogenase of unknown substrate specificity  54.29 
 
 
249 aa  221  9.999999999999999e-57  Sanguibacter keddieii DSM 10542  Bacteria  normal  0.135035  normal  0.316469 
 
 
-
 
NC_013530  Xcel_3148  short-chain dehydrogenase/reductase SDR  54.12 
 
 
259 aa  218  1e-55  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  n/a   
 
 
-
 
NC_014165  Tbis_2195  short-chain dehydrogenase/reductase SDR  51 
 
 
250 aa  214  9.999999999999999e-55  Thermobispora bispora DSM 43833  Bacteria  normal  normal  0.92313 
 
 
-
 
NC_013172  Bfae_25790  short-chain dehydrogenase of unknown substrate specificity  50.41 
 
 
282 aa  211  1e-53  Brachybacterium faecium DSM 4810  Bacteria  normal  n/a   
 
 
-
 
NC_008699  Noca_1466  short-chain dehydrogenase/reductase SDR  49.79 
 
 
253 aa  209  5e-53  Nocardioides sp. JS614  Bacteria  normal  0.0605466  n/a   
 
 
-
 
NC_013169  Ksed_05610  short-chain dehydrogenase of unknown substrate specificity  49.19 
 
 
296 aa  208  9e-53  Kytococcus sedentarius DSM 20547  Bacteria  normal  0.100134  normal  0.886117 
 
 
-
 
NC_013174  Jden_2426  short-chain dehydrogenase/reductase SDR  47.76 
 
 
269 aa  200  1.9999999999999998e-50  Jonesia denitrificans DSM 20603  Bacteria  normal  normal  0.316114 
 
 
-
 
NC_013521  Sked_19470  short-chain dehydrogenase of unknown substrate specificity  47.51 
 
 
287 aa  194  2e-48  Sanguibacter keddieii DSM 10542  Bacteria  normal  normal 
 
 
-
 
NC_013172  Bfae_27130  short-chain dehydrogenase of unknown substrate specificity  49.81 
 
 
258 aa  192  4e-48  Brachybacterium faecium DSM 4810  Bacteria  normal  n/a   
 
 
-
 
NC_009338  Mflv_0244  short-chain dehydrogenase/reductase SDR  48.79 
 
 
258 aa  190  2e-47  Mycobacterium gilvum PYR-GCK  Bacteria  normal  normal 
 
 
-
 
NC_009077  Mjls_0469  short-chain dehydrogenase/reductase SDR  48.39 
 
 
258 aa  189  2.9999999999999997e-47  Mycobacterium sp. JLS  Bacteria  normal  normal 
 
 
-
 
NC_013510  Tcur_1833  short-chain dehydrogenase/reductase SDR  45.78 
 
 
252 aa  189  5e-47  Thermomonospora curvata DSM 43183  Bacteria  normal  0.092001  n/a   
 
 
-
 
NC_008146  Mmcs_0480  short-chain dehydrogenase/reductase SDR  48.39 
 
 
258 aa  189  5e-47  Mycobacterium sp. MCS  Bacteria  normal  n/a   
 
 
-
 
NC_008705  Mkms_0491  short-chain dehydrogenase/reductase SDR  48.39 
 
 
258 aa  189  5e-47  Mycobacterium sp. KMS  Bacteria  normal  normal  0.354983 
 
 
-
 
NC_013093  Amir_6941  short-chain dehydrogenase/reductase SDR  45.85 
 
 
259 aa  186  2e-46  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_011879  Achl_3992  short-chain dehydrogenase/reductase SDR  46.19 
 
 
251 aa  187  2e-46  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal  0.608737 
 
 
-
 
NC_013131  Caci_8408  short-chain dehydrogenase/reductase SDR  46.03 
 
 
254 aa  182  4.0000000000000006e-45  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.485174  normal 
 
 
-
 
NC_011886  Achl_0516  short-chain dehydrogenase/reductase SDR  42.25 
 
 
263 aa  178  7e-44  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal 
 
 
-
 
NC_009439  Pmen_1100  short-chain dehydrogenase/reductase SDR  45.2 
 
 
264 aa  176  3e-43  Pseudomonas mendocina ymp  Bacteria  normal  0.576998  normal  0.0165353 
 
 
-
 
NC_008726  Mvan_0661  short-chain dehydrogenase/reductase SDR  46.99 
 
 
258 aa  176  3e-43  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  normal  0.381329 
 
 
-
 
NC_013595  Sros_6514  short-chain dehydrogenase/reductase SDR  48.19 
 
 
250 aa  175  6e-43  Streptosporangium roseum DSM 43021  Bacteria  normal  0.757683  normal  0.645684 
 
 
-
 
NC_008541  Arth_0289  short-chain dehydrogenase/reductase SDR  43.32 
 
 
258 aa  174  9.999999999999999e-43  Arthrobacter sp. FB24  Bacteria  normal  n/a   
 
 
-
 
NC_013235  Namu_5163  short-chain dehydrogenase/reductase SDR  42.91 
 
 
258 aa  173  1.9999999999999998e-42  Nakamurella multipartita DSM 44233  Bacteria  normal  normal 
 
 
-
 
NC_009953  Sare_0129  short-chain dehydrogenase/reductase SDR  44.31 
 
 
269 aa  172  3.9999999999999995e-42  Salinispora arenicola CNS-205  Bacteria  normal  decreased coverage  0.0000288771 
 
 
-
 
NC_008578  Acel_2122  short-chain dehydrogenase/reductase SDR  42.67 
 
 
249 aa  172  3.9999999999999995e-42  Acidothermus cellulolyticus 11B  Bacteria  normal  normal  0.617745 
 
 
-
 
NC_009380  Strop_0124  short-chain dehydrogenase/reductase SDR  42.68 
 
 
269 aa  169  3e-41  Salinispora tropica CNB-440  Bacteria  normal  normal 
 
 
-
 
NC_013159  Svir_38500  short-chain dehydrogenase of unknown substrate specificity  44.49 
 
 
253 aa  169  4e-41  Saccharomonospora viridis DSM 43017  Bacteria  normal  normal 
 
 
-
 
NC_007951  Bxe_A4474  putative short-chain dehydrogenase/reductase SDR  39.77 
 
 
270 aa  162  8.000000000000001e-39  Burkholderia xenovorans LB400  Bacteria  normal  hitchhiker  0.000662369 
 
 
-
 
NC_007492  Pfl01_4040  Short-chain dehydrogenase/reductase SDR  42.02 
 
 
264 aa  159  6e-38  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.128419  normal  0.923094 
 
 
-
 
NC_013421  Pecwa_2365  short-chain dehydrogenase/reductase SDR  39 
 
 
257 aa  156  3e-37  Pectobacterium wasabiae WPP163  Bacteria  normal  n/a   
 
 
-
 
NC_009656  PSPA7_5551  putative short-chain dehydrogenase  39.62 
 
 
265 aa  154  2e-36  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_013510  Tcur_3579  short-chain dehydrogenase/reductase SDR  42.49 
 
 
258 aa  152  7e-36  Thermomonospora curvata DSM 43183  Bacteria  normal  0.392131  n/a   
 
 
-
 
NC_013947  Snas_6420  short-chain dehydrogenase/reductase SDR  45.11 
 
 
259 aa  151  1e-35  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal 
 
 
-
 
NC_010681  Bphyt_3970  short-chain dehydrogenase/reductase SDR  39.74 
 
 
270 aa  151  1e-35  Burkholderia phytofirmans PsJN  Bacteria  normal  normal 
 
 
-
 
NC_010338  Caul_3460  short-chain dehydrogenase/reductase SDR  42.42 
 
 
269 aa  150  2e-35  Caulobacter sp. K31  Bacteria  normal  0.590645  normal 
 
 
-
 
NC_007413  Ava_1572  Short-chain dehydrogenase/reductase SDR  33.97 
 
 
263 aa  149  4e-35  Anabaena variabilis ATCC 29413  Bacteria  normal  normal  0.577459 
 
 
-
 
NC_010338  Caul_4770  short-chain dehydrogenase/reductase SDR  39.27 
 
 
266 aa  149  5e-35  Caulobacter sp. K31  Bacteria  normal  normal  0.228735 
 
 
-
 
NC_008463  PA14_63890  putative short-chain dehydrogenase  41.25 
 
 
265 aa  148  9e-35  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal 
 
 
-
 
NC_008391  Bamb_4735  short-chain dehydrogenase/reductase SDR  39.53 
 
 
262 aa  147  2.0000000000000003e-34  Burkholderia ambifaria AMMD  Bacteria  normal  normal 
 
 
-
 
NC_012912  Dd1591_2059  short-chain dehydrogenase/reductase SDR  36.4 
 
 
260 aa  146  3e-34  Dickeya zeae Ech1591  Bacteria  normal  n/a   
 
 
-
 
NC_009338  Mflv_0138  short-chain dehydrogenase/reductase SDR  40.6 
 
 
273 aa  146  4.0000000000000006e-34  Mycobacterium gilvum PYR-GCK  Bacteria  normal  normal 
 
 
-
 
NC_010505  Mrad2831_1275  short-chain dehydrogenase/reductase SDR  40.68 
 
 
271 aa  144  1e-33  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal 
 
 
-
 
NC_009512  Pput_2703  short-chain dehydrogenase/reductase SDR  39.26 
 
 
264 aa  144  2e-33  Pseudomonas putida F1  Bacteria  normal  normal 
 
 
-
 
NC_002947  PP_2989  short chain dehydrogenase/reductase family oxidoreductase  38.84 
 
 
264 aa  143  4e-33  Pseudomonas putida KT2440  Bacteria  normal  normal  0.0851531 
 
 
-
 
NC_007492  Pfl01_2478  Short-chain dehydrogenase/reductase SDR  41.74 
 
 
262 aa  143  4e-33  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal 
 
 
-
 
NC_011666  Msil_0380  short-chain dehydrogenase/reductase SDR  37.16 
 
 
265 aa  141  9.999999999999999e-33  Methylocella silvestris BL2  Bacteria  n/a    normal  0.453235 
 
 
-
 
NC_009664  Krad_2466  short-chain dehydrogenase/reductase SDR  41.28 
 
 
283 aa  140  1.9999999999999998e-32  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal 
 
 
-
 
NC_014211  Ndas_5378  short-chain dehydrogenase/reductase SDR  38.15 
 
 
277 aa  140  3e-32  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal 
 
 
-
 
NC_008146  Mmcs_4085  short-chain dehydrogenase/reductase SDR  40 
 
 
267 aa  139  3.9999999999999997e-32  Mycobacterium sp. MCS  Bacteria  normal  n/a   
 
 
-
 
NC_008705  Mkms_4161  short-chain dehydrogenase/reductase SDR  40 
 
 
267 aa  139  3.9999999999999997e-32  Mycobacterium sp. KMS  Bacteria  normal  0.209625  normal 
 
 
-
 
NC_007005  Psyr_3539  Short-chain dehydrogenase/reductase SDR  37.83 
 
 
262 aa  139  4.999999999999999e-32  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal  0.0684522 
 
 
-
 
NC_010552  BamMC406_5270  short-chain dehydrogenase/reductase SDR  38.37 
 
 
262 aa  139  7e-32  Burkholderia ambifaria MC40-6  Bacteria  normal  normal 
 
 
-
 
NC_011663  Sbal223_2174  short-chain dehydrogenase/reductase SDR  37.29 
 
 
261 aa  138  7.999999999999999e-32  Shewanella baltica OS223  Bacteria  normal  0.30567  hitchhiker  0.00567391 
 
 
-
 
NC_009077  Mjls_4315  short-chain dehydrogenase/reductase SDR  39.62 
 
 
267 aa  138  8.999999999999999e-32  Mycobacterium sp. JLS  Bacteria  normal  normal  0.294207 
 
 
-
 
NC_013093  Amir_2216  short-chain dehydrogenase/reductase SDR  41.7 
 
 
266 aa  138  1e-31  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_010322  PputGB1_3070  short-chain dehydrogenase/reductase SDR  39.32 
 
 
265 aa  137  2e-31  Pseudomonas putida GB-1  Bacteria  normal  0.0355963  normal 
 
 
-
 
NC_014248  Aazo_3911  short-chain dehydrogenase/reductase SDR  32.42 
 
 
267 aa  137  2e-31  'Nostoc azollae' 0708  Bacteria  normal  0.322734  n/a   
 
 
-
 
NC_004578  PSPTO_1864  oxidoreductase, short chain dehydrogenase/reductase family  36.57 
 
 
262 aa  136  4e-31  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_010725  Mpop_0718  short-chain dehydrogenase/reductase SDR  39.3 
 
 
263 aa  135  9e-31  Methylobacterium populi BJ001  Bacteria  normal  0.520585  normal 
 
 
-
 
NC_011666  Msil_0129  short-chain dehydrogenase/reductase SDR  36.64 
 
 
271 aa  135  9.999999999999999e-31  Methylocella silvestris BL2  Bacteria  n/a    normal 
 
 
-
 
NC_013522  Taci_1655  short-chain dehydrogenase/reductase SDR  37.14 
 
 
272 aa  134  1.9999999999999998e-30  Thermanaerovibrio acidaminovorans DSM 6589  Bacteria  normal  n/a   
 
 
-
 
NC_007406  Nwi_0477  short-chain dehydrogenase/reductase SDR  43.43 
 
 
256 aa  133  3e-30  Nitrobacter winogradskyi Nb-255  Bacteria  normal  normal 
 
 
-
 
NC_007511  Bcep18194_B1706  Short-chain dehydrogenase/reductase SDR  37.66 
 
 
266 aa  133  3e-30  Burkholderia sp. 383  Bacteria  normal  0.951732  normal 
 
 
-
 
NC_011757  Mchl_0153  short-chain dehydrogenase/reductase SDR  37.99 
 
 
262 aa  132  6.999999999999999e-30  Methylobacterium chloromethanicum CM4  Bacteria  normal  0.418257  normal  0.135019 
 
 
-
 
NC_009485  BBta_5145  putative Short-chain dehydrogenase/reductase SDR  37 
 
 
267 aa  132  6.999999999999999e-30  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.645114  normal  0.0551529 
 
 
-
 
NC_009338  Mflv_3538  short-chain dehydrogenase/reductase SDR  38.22 
 
 
259 aa  131  1.0000000000000001e-29  Mycobacterium gilvum PYR-GCK  Bacteria  normal  0.0177311  normal  0.151964 
 
 
-
 
NC_009483  Gura_1536  short-chain dehydrogenase/reductase SDR  33.86 
 
 
260 aa  131  1.0000000000000001e-29  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_007974  Rmet_4523  short-chain dehydrogenase/reductase SDR  36.55 
 
 
266 aa  131  1.0000000000000001e-29  Cupriavidus metallidurans CH34  Bacteria  normal  0.642907  decreased coverage  0.0040913 
 
 
-
 
NC_010623  Bphy_4200  short-chain dehydrogenase/reductase SDR  35.04 
 
 
271 aa  131  1.0000000000000001e-29  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_011071  Smal_2007  short-chain dehydrogenase/reductase SDR  37.27 
 
 
262 aa  131  1.0000000000000001e-29  Stenotrophomonas maltophilia R551-3  Bacteria  normal  0.511264  normal 
 
 
-
 
NC_009832  Spro_3183  short-chain dehydrogenase/reductase SDR  35.16 
 
 
260 aa  130  2.0000000000000002e-29  Serratia proteamaculans 568  Bacteria  normal  normal 
 
 
-
 
NC_008463  PA14_08440  putative short chain alcohol dehydrogenase  35.77 
 
 
266 aa  130  2.0000000000000002e-29  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  hitchhiker  0.0000000229698 
 
 
-
 
NC_013202  Hmuk_1178  short-chain dehydrogenase/reductase SDR  39.02 
 
 
259 aa  130  2.0000000000000002e-29  Halomicrobium mukohataei DSM 12286  Archaea  normal  0.82399  normal 
 
 
-
 
NC_010717  PXO_01284  dehydrogenase  35.8 
 
 
266 aa  129  4.0000000000000003e-29  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  n/a   
 
 
-
 
NC_013440  Hoch_2231  short-chain dehydrogenase/reductase SDR  38.4 
 
 
263 aa  129  4.0000000000000003e-29  Haliangium ochraceum DSM 14365  Bacteria  normal  0.19807  normal 
 
 
-
 
NC_009565  TBFG_11577  ketoacyl reductase  39.37 
 
 
267 aa  129  4.0000000000000003e-29  Mycobacterium tuberculosis F11  Bacteria  normal  normal 
 
 
-
 
NC_013517  Sterm_1096  short-chain dehydrogenase/reductase SDR  37.5 
 
 
256 aa  129  4.0000000000000003e-29  Sebaldella termitidis ATCC 33386  Bacteria  normal  n/a   
 
 
-
 
NC_009485  BBta_3264  putative oxidoreductase protein  36.36 
 
 
264 aa  129  6e-29  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.724633  normal 
 
 
-
 
NC_007347  Reut_A1901  Short-chain dehydrogenase/reductase SDR  38.86 
 
 
266 aa  129  7.000000000000001e-29  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_008061  Bcen_4061  short-chain dehydrogenase/reductase SDR  36.25 
 
 
281 aa  128  8.000000000000001e-29  Burkholderia cenocepacia AU 1054  Bacteria  normal  0.786818  n/a   
 
 
-
 
NC_008543  Bcen2424_4305  short-chain dehydrogenase/reductase SDR  36.25 
 
 
281 aa  128  8.000000000000001e-29  Burkholderia cenocepacia HI2424  Bacteria  normal  normal  0.699263 
 
 
-
 
NC_010172  Mext_0209  short-chain dehydrogenase/reductase SDR  37.66 
 
 
262 aa  128  8.000000000000001e-29  Methylobacterium extorquens PA1  Bacteria  normal  0.128983  normal 
 
 
-
 
NC_011059  Paes_0281  short-chain dehydrogenase/reductase SDR  36.95 
 
 
255 aa  128  1.0000000000000001e-28  Prosthecochloris aestuarii DSM 271  Bacteria  hitchhiker  0.000634692  hitchhiker  0.00117931 
 
 
-
 
NC_014148  Plim_1352  short-chain dehydrogenase/reductase SDR  36.63 
 
 
271 aa  128  1.0000000000000001e-28  Planctomyces limnophilus DSM 3776  Bacteria  normal  0.708878  n/a   
 
 
-
 
NC_008391  Bamb_3723  short-chain dehydrogenase/reductase SDR  36.36 
 
 
266 aa  127  1.0000000000000001e-28  Burkholderia ambifaria AMMD  Bacteria  normal  0.662669  normal  0.858524 
 
 
-
 
NC_011365  Gdia_0995  short-chain dehydrogenase/reductase SDR  38.36 
 
 
267 aa  128  1.0000000000000001e-28  Gluconacetobacter diazotrophicus PAl 5  Bacteria  normal  normal 
 
 
-
 
NC_009436  Ent638_2278  short-chain dehydrogenase/reductase SDR  33.88 
 
 
260 aa  127  2.0000000000000002e-28  Enterobacter sp. 638  Bacteria  normal  normal  0.161761 
 
 
-
 
NC_010515  Bcenmc03_3212  short-chain dehydrogenase/reductase SDR  36.25 
 
 
266 aa  127  2.0000000000000002e-28  Burkholderia cenocepacia MC0-3  Bacteria  normal  0.177624  normal 
 
 
-
 
NC_009784  VIBHAR_05256  short-chain dehydrogenase/reductase SDR  40.86 
 
 
259 aa  127  2.0000000000000002e-28  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_011894  Mnod_1035  short-chain dehydrogenase/reductase SDR  37.31 
 
 
270 aa  127  3e-28  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.0312813  n/a   
 
 
-
 
NC_007964  Nham_0606  short-chain dehydrogenase/reductase SDR  38.37 
 
 
256 aa  126  3e-28  Nitrobacter hamburgensis X14  Bacteria  normal  n/a   
 
 
-
 
NC_008048  Sala_0082  short-chain dehydrogenase/reductase SDR  37.07 
 
 
269 aa  126  3e-28  Sphingopyxis alaskensis RB2256  Bacteria  normal  normal 
 
 
-
 
NC_008146  Mmcs_0188  short-chain dehydrogenase/reductase SDR  40.55 
 
 
262 aa  126  3e-28  Mycobacterium sp. MCS  Bacteria  normal  n/a   
 
 
-
 
NC_008261  CPF_0353  short chain dehydrogenase/reductase family oxidoreductase  29.5 
 
 
265 aa  126  3e-28  Clostridium perfringens ATCC 13124  Bacteria  normal  0.45647  n/a   
 
 
-
 
NC_011729  PCC7424_4642  short-chain dehydrogenase/reductase SDR  30.8 
 
 
264 aa  127  3e-28  Cyanothece sp. PCC 7424  Bacteria  n/a    hitchhiker  0.0000000179752 
 
 
-
 
NC_008705  Mkms_0197  short-chain dehydrogenase/reductase SDR  40.55 
 
 
262 aa  126  3e-28  Mycobacterium sp. KMS  Bacteria  normal  normal 
 
 
-
 
NC_007492  Pfl01_2716  Short-chain dehydrogenase/reductase SDR  37.18 
 
 
265 aa  126  4.0000000000000003e-28  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal  0.490599 
 
 
-
 
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