More than 300 homologs were found in PanDaTox collection
for query gene Smed_1559 on replicon NC_009636
Organism: Sinorhizobium medicae WSM419



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009636  Smed_1559  regulatory protein LuxR  100 
 
 
246 aa  503  1e-141  Sinorhizobium medicae WSM419  Bacteria  normal  normal  0.509292 
 
 
-
 
NC_011989  Avi_1890  transcriptional regulator LuxR family  38.06 
 
 
246 aa  150  1e-35  Agrobacterium vitis S4  Bacteria  normal  0.546749  n/a   
 
 
-
 
NC_009049  Rsph17029_1758  autoinducer-binding domain-containing protein  36.87 
 
 
233 aa  118  7.999999999999999e-26  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  normal 
 
 
-
 
NC_007493  RSP_0122  LuxR family transcriptional regulator  36.87 
 
 
233 aa  118  7.999999999999999e-26  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  n/a   
 
 
-
 
NC_009428  Rsph17025_1709  autoinducer-binding domain-containing protein  36.87 
 
 
233 aa  115  3.9999999999999997e-25  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  0.781724  normal 
 
 
-
 
NC_010581  Bind_0920  LuxR family transcriptional regulator  28.11 
 
 
268 aa  100  2e-20  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  0.81926  normal  0.148698 
 
 
-
 
NC_009485  BBta_5194  LuxR family transcriptional regulator  28.33 
 
 
242 aa  96.3  5e-19  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal  0.0681352 
 
 
-
 
NC_009621  Smed_5781  response regulator receiver protein  29.44 
 
 
243 aa  94  2e-18  Sinorhizobium medicae WSM419  Bacteria  normal  0.305702  hitchhiker  0.00700374 
 
 
-
 
NC_007925  RPC_2028  LuxR family transcriptional regulator  27.96 
 
 
242 aa  92.8  5e-18  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal 
 
 
-
 
NC_007925  RPC_2210  LuxR family transcriptional regulator  31.95 
 
 
240 aa  92  7e-18  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal 
 
 
-
 
NC_011666  Msil_0097  transcriptional regulator, LuxR family  29.52 
 
 
244 aa  91.7  1e-17  Methylocella silvestris BL2  Bacteria  n/a    normal 
 
 
-
 
NC_009667  Oant_0198  autoinducer-binding domain-containing protein  33.33 
 
 
235 aa  89  6e-17  Ochrobactrum anthropi ATCC 49188  Bacteria  decreased coverage  0.00000129067  n/a   
 
 
-
 
NC_004578  PSPTO_3863  transcriptional regulator PsyR  31.28 
 
 
247 aa  87.8  1e-16  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.831721  n/a   
 
 
-
 
NC_012850  Rleg_2928  transcriptional regulator, LuxR family  31.46 
 
 
241 aa  84.7  0.000000000000001  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.258432  normal 
 
 
-
 
NC_011369  Rleg2_2667  transcriptional regulator, LuxR family  27.19 
 
 
241 aa  84.7  0.000000000000001  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.530563  normal 
 
 
-
 
NC_011988  Avi_5725  DNA-binding HTH domain-containing protein  31.84 
 
 
307 aa  84.3  0.000000000000002  Agrobacterium vitis S4  Bacteria  unclonable  0.000726612  n/a   
 
 
-
 
NC_007912  Sde_3500  LuxR family transcriptional regulator  28.57 
 
 
247 aa  84.3  0.000000000000002  Saccharophagus degradans 2-40  Bacteria  normal  normal  0.547243 
 
 
-
 
NC_009952  Dshi_2852  transcriptional regulator  29.71 
 
 
236 aa  83.2  0.000000000000004  Dinoroseobacter shibae DFL 12  Bacteria  normal  normal 
 
 
-
 
NC_007005  Psyr_1622  LuxR transcriptional regulator  31.28 
 
 
247 aa  82.8  0.000000000000005  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.831315  normal  0.816592 
 
 
-
 
NC_009079  BMA10247_A0702  autoinducer-binding transcriptional regulator BmpR  32.38 
 
 
230 aa  81.3  0.00000000000001  Burkholderia mallei NCTC 10247  Bacteria  normal  0.669136  n/a   
 
 
-
 
NC_009078  BURPS1106A_A2128  autoinducer-binding transcriptional regulator BmpR  32.38 
 
 
230 aa  81.3  0.00000000000001  Burkholderia pseudomallei 1106a  Bacteria  normal  0.423434  n/a   
 
 
-
 
NC_006349  BMAA1576  LuxR family transcriptional regulator  32.38 
 
 
230 aa  81.3  0.00000000000001  Burkholderia mallei ATCC 23344  Bacteria  normal  0.893939  n/a   
 
 
-
 
NC_008835  BMA10229_2024  ATP-dependent transcription regulator LuxR  32.38 
 
 
230 aa  81.3  0.00000000000001  Burkholderia mallei NCTC 10229  Bacteria  normal  0.896026  n/a   
 
 
-
 
NC_007435  BURPS1710b_A0617  LuxR family transcriptional regulator  32.38 
 
 
230 aa  81.3  0.00000000000001  Burkholderia pseudomallei 1710b  Bacteria  normal  0.0241474  n/a   
 
 
-
 
NC_009075  BURPS668_A2215  autoinducer-binding transcriptional regulator BmpR  32.38 
 
 
230 aa  81.3  0.00000000000001  Burkholderia pseudomallei 668  Bacteria  normal  0.311283  n/a   
 
 
-
 
NC_004310  BR0190  LuxR family transcriptional regulator  30.77 
 
 
235 aa  80.5  0.00000000000002  Brucella suis 1330  Bacteria  normal  0.195449  n/a   
 
 
-
 
NC_007650  BTH_II0805  LuxR family transcriptional regulator  30.92 
 
 
230 aa  80.1  0.00000000000003  Burkholderia thailandensis E264  Bacteria  normal  0.565309  n/a   
 
 
-
 
NC_009505  BOV_0183  LuxR family transcriptional regulator  31.71 
 
 
235 aa  78.6  0.00000000000008  Brucella ovis ATCC 25840  Bacteria  normal  0.0816251  n/a   
 
 
-
 
NC_010682  Rpic_0460  transcriptional regulator, LuxR family  32.75 
 
 
253 aa  79  0.00000000000008  Ralstonia pickettii 12J  Bacteria  normal  normal  0.343765 
 
 
-
 
NC_007778  RPB_0418  LuxR family transcriptional regulator  34.78 
 
 
242 aa  78.6  0.00000000000009  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal 
 
 
-
 
NC_011004  Rpal_0323  transcriptional regulator, LuxR family  33.15 
 
 
243 aa  77.8  0.0000000000001  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_013440  Hoch_3098  transcriptional regulator, LuxR family  31.79 
 
 
254 aa  78.2  0.0000000000001  Haliangium ochraceum DSM 14365  Bacteria  normal  0.521704  normal  0.269359 
 
 
-
 
NC_010506  Swoo_2997  LuxR family transcriptional regulator  32.43 
 
 
250 aa  78.2  0.0000000000001  Shewanella woodyi ATCC 51908  Bacteria  normal  normal  0.665573 
 
 
-
 
NC_011894  Mnod_1003  transcriptional regulator, LuxR family  28.83 
 
 
245 aa  77.8  0.0000000000002  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.383688  n/a   
 
 
-
 
NC_009485  BBta_7112  LuxR family transcriptional regulator  32.97 
 
 
242 aa  77  0.0000000000003  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.0985225  normal  0.773577 
 
 
-
 
NC_008043  TM1040_3102  LuxR family transcriptional regulator  29.61 
 
 
239 aa  76.3  0.0000000000005  Ruegeria sp. TM1040  Bacteria  normal  0.644499  normal 
 
 
-
 
NC_010515  Bcenmc03_4279  LuxR family transcriptional regulator  32.77 
 
 
321 aa  75.9  0.0000000000006  Burkholderia cenocepacia MC0-3  Bacteria  normal  0.189781  normal  0.0123236 
 
 
-
 
NC_008228  Patl_0359  LuxR family transcriptional regulator  29.79 
 
 
248 aa  75.5  0.0000000000008  Pseudoalteromonas atlantica T6c  Bacteria  normal  0.870907  n/a   
 
 
-
 
NC_007650  BTH_II1231  ATP-dependent transcription regulator LuxR  31.58 
 
 
234 aa  74.3  0.000000000002  Burkholderia thailandensis E264  Bacteria  normal  0.681253  n/a   
 
 
-
 
NC_008254  Meso_1407  LuxR family transcriptional regulator  28.81 
 
 
241 aa  74.3  0.000000000002  Chelativorans sp. BNC1  Bacteria  normal  0.959158  n/a   
 
 
-
 
NC_009075  BURPS668_A1652  ATP-dependent transcription regulator LuxR  32.54 
 
 
234 aa  73.2  0.000000000003  Burkholderia pseudomallei 668  Bacteria  normal  0.643432  n/a   
 
 
-
 
NC_007435  BURPS1710b_A0142  N-acyl-homoserine lactone dependent regulatory protein  32.54 
 
 
234 aa  73.2  0.000000000003  Burkholderia pseudomallei 1710b  Bacteria  normal  0.0163426  n/a   
 
 
-
 
NC_009078  BURPS1106A_A1570  ATP-dependent transcription regulator LuxR  32.54 
 
 
236 aa  73.2  0.000000000003  Burkholderia pseudomallei 1106a  Bacteria  normal  0.778317  n/a   
 
 
-
 
NC_011313  VSAL_II0958  transcriptional activator protein LuxR  24.19 
 
 
247 aa  73.6  0.000000000003  Aliivibrio salmonicida LFI1238  Bacteria  normal  n/a   
 
 
-
 
NC_010517  Mrad2831_6408  LuxR family transcriptional regulator  35 
 
 
248 aa  73.2  0.000000000004  Methylobacterium radiotolerans JCM 2831  Bacteria  n/a    normal 
 
 
-
 
NC_010514  Mrad2831_6378  LuxR family transcriptional regulator  35 
 
 
248 aa  73.2  0.000000000004  Methylobacterium radiotolerans JCM 2831  Bacteria  n/a    n/a   
 
 
-
 
NC_007958  RPD_0402  regulatory protein, LuxR  32.43 
 
 
242 aa  72.4  0.000000000006  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal 
 
 
-
 
NC_008752  Aave_3810  LuxR family transcriptional regulator  29.69 
 
 
242 aa  72.4  0.000000000007  Acidovorax citrulli AAC00-1  Bacteria  normal  normal 
 
 
-
 
NC_010557  BamMC406_5810  LuxR family transcriptional regulator  27.78 
 
 
228 aa  72  0.000000000008  Burkholderia ambifaria MC40-6  Bacteria  normal  0.809704  normal 
 
 
-
 
NC_008392  Bamb_6040  LuxR family transcriptional regulator  27.78 
 
 
228 aa  72  0.000000000008  Burkholderia ambifaria AMMD  Bacteria  normal  normal  0.917081 
 
 
-
 
NC_011313  VSAL_II0965  transcriptional activator protein LuxR  27.01 
 
 
248 aa  71.6  0.00000000001  Aliivibrio salmonicida LFI1238  Bacteria  normal  0.266935  n/a   
 
 
-
 
NC_010552  BamMC406_4581  LuxR family transcriptional regulator  34.08 
 
 
239 aa  71.2  0.00000000001  Burkholderia ambifaria MC40-6  Bacteria  hitchhiker  0.00000141763  hitchhiker  0.0000089809 
 
 
-
 
NC_011761  AFE_1997  autoinducer-binding transcriptional regulator, LuxR family  32.22 
 
 
237 aa  70.9  0.00000000002  Acidithiobacillus ferrooxidans ATCC 23270  Bacteria  normal  0.448669  n/a   
 
 
-
 
NC_011206  Lferr_1664  transcriptional regulator, LuxR family  32.22 
 
 
237 aa  70.9  0.00000000002  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria  normal  normal  0.888844 
 
 
-
 
NC_008391  Bamb_4116  LuxR family transcriptional regulator  34.08 
 
 
239 aa  70.1  0.00000000003  Burkholderia ambifaria AMMD  Bacteria  normal  0.0201758  hitchhiker  0.00877352 
 
 
-
 
NC_011666  Msil_0694  transcriptional regulator, LuxR family  26.36 
 
 
242 aa  70.5  0.00000000003  Methylocella silvestris BL2  Bacteria  n/a    normal 
 
 
-
 
NC_007517  Gmet_1513  LuxR family transcriptional regulator  28.65 
 
 
246 aa  69.7  0.00000000004  Geobacter metallireducens GS-15  Bacteria  hitchhiker  0.0000000493267  normal 
 
 
-
 
NC_010725  Mpop_5029  transcriptional regulator, LuxR family  30.43 
 
 
243 aa  69.7  0.00000000004  Methylobacterium populi BJ001  Bacteria  normal  0.771298  normal  0.575652 
 
 
-
 
NC_008835  BMA10229_2171  ATP-dependent transcription regulator LuxR  31.18 
 
 
238 aa  69.7  0.00000000005  Burkholderia mallei NCTC 10229  Bacteria  normal  0.0944598  n/a   
 
 
-
 
NC_009075  BURPS668_A0542  ATP-dependent transcription regulator LuxR  31.18 
 
 
238 aa  69.7  0.00000000005  Burkholderia pseudomallei 668  Bacteria  normal  n/a   
 
 
-
 
NC_006349  BMAA1443  ATP-dependent transcription regulator LuxR  31.18 
 
 
238 aa  69.7  0.00000000005  Burkholderia mallei ATCC 23344  Bacteria  normal  n/a   
 
 
-
 
NC_009079  BMA10247_A0854  ATP-dependent transcription regulator LuxR  31.18 
 
 
238 aa  69.7  0.00000000005  Burkholderia mallei NCTC 10247  Bacteria  normal  0.777865  n/a   
 
 
-
 
NC_009078  BURPS1106A_A0444  ATP-dependent transcription regulator LuxR  31.18 
 
 
238 aa  69.7  0.00000000005  Burkholderia pseudomallei 1106a  Bacteria  normal  0.853961  n/a   
 
 
-
 
NC_010159  YpAngola_A0182  LuxR family transcriptional regulator  26.04 
 
 
247 aa  68.9  0.00000000007  Yersinia pestis Angola  Bacteria  hitchhiker  0.00268604  hitchhiker  0.00000585836 
 
 
-
 
NC_010465  YPK_0791  LuxR family transcriptional regulator  26.04 
 
 
247 aa  68.9  0.00000000007  Yersinia pseudotuberculosis YPIII  Bacteria  normal  n/a   
 
 
-
 
NC_009708  YpsIP31758_0720  LuxR family transcriptional regulator  26.04 
 
 
247 aa  68.9  0.00000000007  Yersinia pseudotuberculosis IP 31758  Bacteria  normal  n/a   
 
 
-
 
NC_003295  RSc3287  transcriptional activator SOLR transcription regulator protein  30 
 
 
236 aa  68.6  0.00000000008  Ralstonia solanacearum GMI1000  Bacteria  normal  0.840181  normal 
 
 
-
 
NC_010515  Bcenmc03_5576  LuxR family transcriptional regulator  33.52 
 
 
239 aa  68.6  0.00000000008  Burkholderia cenocepacia MC0-3  Bacteria  hitchhiker  0.000012464  normal  0.015154 
 
 
-
 
NC_008061  Bcen_3643  LuxR family transcriptional regulator  33.52 
 
 
239 aa  68.6  0.00000000008  Burkholderia cenocepacia AU 1054  Bacteria  hitchhiker  0.00106494  n/a   
 
 
-
 
NC_008543  Bcen2424_4724  LuxR family transcriptional regulator  33.52 
 
 
239 aa  68.6  0.00000000008  Burkholderia cenocepacia HI2424  Bacteria  hitchhiker  0.000522863  hitchhiker  0.00659366 
 
 
-
 
NC_009656  PSPA7_3898  transcriptional regulator LasR  30.5 
 
 
239 aa  68.9  0.00000000008  Pseudomonas aeruginosa PA7  Bacteria  normal  0.219668  n/a   
 
 
-
 
NC_007643  Rru_A3395  LuxR family transcriptional regulator  28.81 
 
 
260 aa  67.8  0.0000000001  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  n/a   
 
 
-
 
NC_010086  Bmul_3971  LuxR family transcriptional regulator  33.52 
 
 
239 aa  68.6  0.0000000001  Burkholderia multivorans ATCC 17616  Bacteria  hitchhiker  0.000126265  normal  0.0321799 
 
 
-
 
NC_007961  Nham_4558  LuxR family transcriptional regulator  29.55 
 
 
234 aa  67.8  0.0000000001  Nitrobacter hamburgensis X14  Bacteria  normal  0.534127  n/a   
 
 
-
 
NC_011989  Avi_0918  transcriptional regulator LuxR family  55.74 
 
 
230 aa  68.2  0.0000000001  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_008463  PA14_39980  putative transcriptional regulator  29.9 
 
 
237 aa  68.6  0.0000000001  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal 
 
 
-
 
NC_008463  PA14_45960  transcriptional regulator LasR  30.5 
 
 
239 aa  68.2  0.0000000001  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal 
 
 
-
 
NC_012856  Rpic12D_2528  two component transcriptional regulator, LuxR family  53.97 
 
 
201 aa  67.4  0.0000000002  Ralstonia pickettii 12D  Bacteria  normal  normal  0.0341229 
 
 
-
 
NC_010465  YPK_1655  LuxR family transcriptional regulator  26.84 
 
 
245 aa  67.4  0.0000000002  Yersinia pseudotuberculosis YPIII  Bacteria  normal  n/a   
 
 
-
 
NC_010683  Rpic_4984  two component transcriptional regulator, LuxR family  53.97 
 
 
201 aa  67.4  0.0000000002  Ralstonia pickettii 12J  Bacteria  normal  normal  0.0145131 
 
 
-
 
NC_010682  Rpic_2943  two component transcriptional regulator, LuxR family  53.97 
 
 
201 aa  67.8  0.0000000002  Ralstonia pickettii 12J  Bacteria  normal  normal 
 
 
-
 
NC_012850  Rleg_0318  transcriptional regulator, LuxR family  33.33 
 
 
234 aa  67.4  0.0000000002  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal 
 
 
-
 
NC_007435  BURPS1710b_A1863  ATP-dependent transcription regulator LuxR  31.18 
 
 
394 aa  67.8  0.0000000002  Burkholderia pseudomallei 1710b  Bacteria  hitchhiker  0.00465528  n/a   
 
 
-
 
NC_007650  BTH_II2087  ATP-dependent transcription regulator LuxR  31.18 
 
 
425 aa  67.4  0.0000000002  Burkholderia thailandensis E264  Bacteria  normal  0.417065  n/a   
 
 
-
 
NC_010682  Rpic_1673  two component transcriptional regulator, LuxR family  53.97 
 
 
201 aa  67.8  0.0000000002  Ralstonia pickettii 12J  Bacteria  normal  0.619826  normal 
 
 
-
 
NC_009708  YpsIP31758_1547  LuxR family transcriptional regulator  26.84 
 
 
245 aa  67.4  0.0000000002  Yersinia pseudotuberculosis IP 31758  Bacteria  normal  n/a   
 
 
-
 
NC_010159  YpAngola_A1715  LuxR family transcriptional regulator  26.84 
 
 
245 aa  67.4  0.0000000002  Yersinia pestis Angola  Bacteria  hitchhiker  0.00270807  hitchhiker  0.000116776 
 
 
-
 
NC_009952  Dshi_1815  putative transcriptional regulator  30.26 
 
 
265 aa  67  0.0000000002  Dinoroseobacter shibae DFL 12  Bacteria  normal  0.319475  normal  0.33301 
 
 
-
 
NC_010172  Mext_4514  autoinducer-binding domain-containing protein  29.89 
 
 
243 aa  67  0.0000000003  Methylobacterium extorquens PA1  Bacteria  normal  0.447162  normal 
 
 
-
 
NC_013422  Hneap_0963  transcriptional regulator, LuxR family  28.74 
 
 
237 aa  66.6  0.0000000003  Halothiobacillus neapolitanus c2  Bacteria  normal  0.27907  n/a   
 
 
-
 
NC_010505  Mrad2831_4715  two component LuxR family transcriptional regulator  48.19 
 
 
196 aa  66.6  0.0000000004  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal 
 
 
-
 
NC_012880  Dd703_0127  transcriptional regulator, LuxR family  27.13 
 
 
236 aa  66.2  0.0000000004  Dickeya dadantii Ech703  Bacteria  normal  n/a   
 
 
-
 
NC_009656  PSPA7_3386  putative transcriptional regulator  29.38 
 
 
237 aa  66.6  0.0000000004  Pseudomonas aeruginosa PA7  Bacteria  normal  0.247592  n/a   
 
 
-
 
NC_011371  Rleg2_6376  transcriptional regulator, LuxR family  31.89 
 
 
258 aa  66.2  0.0000000004  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal  0.888984 
 
 
-
 
NC_011757  Mchl_4977  transcriptional regulator, LuxR family  29.89 
 
 
243 aa  66.2  0.0000000004  Methylobacterium chloromethanicum CM4  Bacteria  normal  0.637652  normal  0.142556 
 
 
-
 
NC_003296  RS01929  transcriptional activator of quorum sensing autoinducer synthesis transcription regulator protein  33.33 
 
 
248 aa  65.9  0.0000000006  Ralstonia solanacearum GMI1000  Bacteria  normal  normal  0.746701 
 
 
-
 
NC_007511  Bcep18194_B1052  LuxR family transcriptional regulator  32.96 
 
 
239 aa  65.9  0.0000000006  Burkholderia sp. 383  Bacteria  hitchhiker  0.00000000445716  normal  0.182523 
 
 
-
 
NC_013421  Pecwa_4428  transcriptional regulator, LuxR family  26.98 
 
 
245 aa  65.9  0.0000000006  Pectobacterium wasabiae WPP163  Bacteria  normal  n/a   
 
 
-
 
NC_010658  SbBS512_E1044  DNA-binding transcriptional activator SdiA  30.27 
 
 
240 aa  65.9  0.0000000006  Shigella boydii CDC 3083-94  Bacteria  hitchhiker  0.000369866  n/a   
 
 
-
 
NC_009801  EcE24377A_2150  DNA-binding transcriptional activator SdiA  30.27 
 
 
240 aa  65.9  0.0000000006  Escherichia coli E24377A  Bacteria  hitchhiker  0.000560081  n/a   
 
 
-
 
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