Gene Avi_0918 details

Gene Information

• Locus tag: Avi_0918
• Symbol: avhR
• ID: 7387716
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Agrobacterium vitis S4
• Kingdom: Bacteria
• Replicon accession: NC_011989
• Strand: +
• Start bp: 776222
• End bp: 776914
• Gene Length: 693 bp
• Protein Length: 230 aa
• Translation table: 11
• GC content: 56%
• IMG OID: 643650444
• Product: transcriptional regulator LuxR family
• Protein accession: YP_002548652
• Protein GI: 222147695
• COG category: [K] Transcription
• COG ID: [COG2771] DNA-binding HTH domain-containing proteins

Plasmid Coverage information

• Num covering plasmid clones: 10
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

GTGCGCGAAT TAAGTGGCTA TAAGACCCAG TTTGACGTTT TCAGGCTGAT GAAGCGGTTG 
ACTGACTTTT TCGGCGCCAA GGGTTTCATG GTCATGAATG TGCCTTCGGC TGGTGCAAAA 
ACTTTGACCG GCAGCTCGGT CATCACCAAC TGGCCTGCTG ATTTTCTCAG CGAATACGAC 
ATGGCGTCCC TGCTGTCGTC CAGCCCGATG TTCAACCGGT TGCGCAACAC CTCTATACCC 
GTTGTTTTCG ATGTGCATGT GGTCGCCCGC GAACGCGATC CCAAGACTGT CGAGCTGGCG 
ACGGACCTGT TTTTGCGGTT CGGCATGCCG CGCGGCGCCT GTTTTCCGGT TCATGATGCC 
CATGGCAACC GGGGCGCTGT CAATATTTGC GGTGAAATGC CAGCCTTTTC CTTCGTCGAC 
ATGGTGCTGC TGCAATATCT GGCCGGGCAT GTGTTCAACC GGCTTGCCGA AATTCGCGAA 
CTGGATGCAC GGGTCACCGA AACGCTGACG GAGCGCGAGA TCGAATGTCT GACCTGGACG 
GCGGCGGGCA AGACCTCCGT TGAAATCGCT GAGATCATGG GCCTGTCAGA ACATACGATC 
AATCATTATC TCAACCGCGC CACCCGCAAG CTGGATACCG TGAACCGCAC CCAGGCGGTC 
GCGAAGGCGC TACGGTTGAG CCTGATCAAA TAG 

 

Protein sequence

MRELSGYKTQ FDVFRLMKRL TDFFGAKGFM VMNVPSAGAK TLTGSSVITN WPADFLSEYD 
MASLLSSSPM FNRLRNTSIP VVFDVHVVAR ERDPKTVELA TDLFLRFGMP RGACFPVHDA 
HGNRGAVNIC GEMPAFSFVD MVLLQYLAGH VFNRLAEIRE LDARVTETLT EREIECLTWT 
AAGKTSVEIA EIMGLSEHTI NHYLNRATRK LDTVNRTQAV AKALRLSLIK