| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_1890 |
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| Symbol | avsR |
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| ID | 7387202 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011989 |
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| Strand | - |
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| Start bp | 1564371 |
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| End bp | 1565111 |
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| Gene Length | 741 bp |
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| Protein Length | 246 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 643651164 |
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| Product | transcriptional regulator LuxR family |
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| Protein accession | YP_002549361 |
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| Protein GI | 222148404 |
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| COG category | [K] Transcription |
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| COG ID | [COG2771] DNA-binding HTH domain-containing proteins |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.546749 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGTTTGACG ATGACATTTA TTTTAATTTG CTCGATTGGC TGGAGACCGC CACCAGCGCG
AAATGGACCG ATTTCCTGAA CCGCCTGCAA ATCAGCTACA ACCTGTCCGG CTGTCTTTAC
ATGGACGCTT CCATCACCTC GGCTGGCGCT CTGGTATATC GATACGGGCA TACATTCGAT
AAGCAGGCAA AAGACCCTAT CCTCATGCTC GATGCGCCTG TTTTGCGTAA CGTCTTGTCA
CAACTCAGCC GGGCCATGGA ACCGGTGGAT ATGCATGACC TCGCGCAATT GAGCGAAGAG
GGCCTTCTGT TGCGCAGCAA GCTGCGCGAT CTGCCCTTGC CGAGGCAAGC CGTCAGTTAT
CCGCTGCTTT CGGTCGATGG ACGCGGCGCA ATTCTCGCTA TTGCAAGCAA TGCATGTGAG
GAGGAGTGGC GACGCTTTCG CCGCTGCCAT GACCGCGACA TCCATCTTCT GGCGGGAAAA
TTCCACGCAG GCCTAGTGAA ACGCTGCGAT GGTACCCGCC TCGGAGGTGT GCCCACCCTC
ACCCGACGGG AACAGGAAAC CCTGCGATGG ACGGCTGCGG GCAAAAGCTA TTGGGAAACC
GCCGTGATCC TTGGAATCTC TGAACGGACC GTGCGGTATT TTATGGCCAA TGCCCGCACC
AAACTCGACG CCGTCTCCAA CACTCAAGCG GTGGCAAAGG CCCTGCAACG CGGCCTGATC
CCACCGGAAG CACCATTATA A
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| Protein sequence | MFDDDIYFNL LDWLETATSA KWTDFLNRLQ ISYNLSGCLY MDASITSAGA LVYRYGHTFD
KQAKDPILML DAPVLRNVLS QLSRAMEPVD MHDLAQLSEE GLLLRSKLRD LPLPRQAVSY
PLLSVDGRGA ILAIASNACE EEWRRFRRCH DRDIHLLAGK FHAGLVKRCD GTRLGGVPTL
TRREQETLRW TAAGKSYWET AVILGISERT VRYFMANART KLDAVSNTQA VAKALQRGLI
PPEAPL
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