Gene PA14_39980 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPA14_39980 
SymbolqscR 
ID4385618 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas aeruginosa UCBPP-PA14 
KingdomBacteria 
Replicon accessionNC_008463 
Strand
Start bp3562214 
End bp3562927 
Gene Length714 bp 
Protein Length237 aa 
Translation table11 
GC content56% 
IMG OID639325772 
Productputative transcriptional regulator 
Protein accessionYP_791341 
Protein GI116049852 
COG category[K] Transcription 
COG ID[COG2771] DNA-binding HTH domain-containing proteins 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones61 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones67 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCATGATG AGAGAGAGGG ATATCTCGAG ATTTTGTCAA GAATAACAAC CGAGGAAGAG 
TTCTTCTCCC TGGTTCTCGA GATATGCGGT AATTATGGAT TCGAATTCTT TTCATTCGGT
GCGCGGGCGC CTTTCCCGCT GACCGCGCCT AAATATCATT TCTTGTCCAA TTACCCAGGG
GAATGGAAAA GCAGATATAT CTCCGAAGAC TACACATCCA TCGACCCGAT CGTGCGCCAT
GGTCTCCTGG AATACACCCC GCTGATCTGG AATGGCGAAG ACTTCCAGGA GAACCGTTTC
TTCTGGGAGG AAGCGCTGCA TCACGGCATC CGTCACGGCT GGTCGATCCC GGTCCGCGGC
AAGTACGGGC TGATCAGCAT GCTGTCCCTG GTGCGTTCCA GCGAGAGCAT CGCCGCTACG
GAAATCCTGG AGAAGGAATC CTTCCTGCTC TGGATCACCA GCATGCTGCA GGCTACCTTC
GGCGACCTGC TGGCGCCGCG CATCGTCCCG GAAAGCAATG TGCGCCTGAC CGCCAGGGAA
ACCGAGATGC TCAAGTGGAC CGCGGTGGGC AAGACCTACG GCGAGATCGG CCTGATCCTG
TCGATCGACC AGCGCACGGT GAAATTCCAT ATCGTCAATG CGATGCGCAA GCTCAACTCC
AGCAACAAGG CGGAGGCCAC CATGAAGGCC TACGCCATCG GCCTGCTCAA CTGA
 
Protein sequence
MHDEREGYLE ILSRITTEEE FFSLVLEICG NYGFEFFSFG ARAPFPLTAP KYHFLSNYPG 
EWKSRYISED YTSIDPIVRH GLLEYTPLIW NGEDFQENRF FWEEALHHGI RHGWSIPVRG
KYGLISMLSL VRSSESIAAT EILEKESFLL WITSMLQATF GDLLAPRIVP ESNVRLTARE
TEMLKWTAVG KTYGEIGLIL SIDQRTVKFH IVNAMRKLNS SNKAEATMKA YAIGLLN