Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PA14_39980 |
Symbol | qscR |
ID | 4385618 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas aeruginosa UCBPP-PA14 |
Kingdom | Bacteria |
Replicon accession | NC_008463 |
Strand | - |
Start bp | 3562214 |
End bp | 3562927 |
Gene Length | 714 bp |
Protein Length | 237 aa |
Translation table | 11 |
GC content | 56% |
IMG OID | 639325772 |
Product | putative transcriptional regulator |
Protein accession | YP_791341 |
Protein GI | 116049852 |
COG category | [K] Transcription |
COG ID | [COG2771] DNA-binding HTH domain-containing proteins |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 61 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 67 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGCATGATG AGAGAGAGGG ATATCTCGAG ATTTTGTCAA GAATAACAAC CGAGGAAGAG TTCTTCTCCC TGGTTCTCGA GATATGCGGT AATTATGGAT TCGAATTCTT TTCATTCGGT GCGCGGGCGC CTTTCCCGCT GACCGCGCCT AAATATCATT TCTTGTCCAA TTACCCAGGG GAATGGAAAA GCAGATATAT CTCCGAAGAC TACACATCCA TCGACCCGAT CGTGCGCCAT GGTCTCCTGG AATACACCCC GCTGATCTGG AATGGCGAAG ACTTCCAGGA GAACCGTTTC TTCTGGGAGG AAGCGCTGCA TCACGGCATC CGTCACGGCT GGTCGATCCC GGTCCGCGGC AAGTACGGGC TGATCAGCAT GCTGTCCCTG GTGCGTTCCA GCGAGAGCAT CGCCGCTACG GAAATCCTGG AGAAGGAATC CTTCCTGCTC TGGATCACCA GCATGCTGCA GGCTACCTTC GGCGACCTGC TGGCGCCGCG CATCGTCCCG GAAAGCAATG TGCGCCTGAC CGCCAGGGAA ACCGAGATGC TCAAGTGGAC CGCGGTGGGC AAGACCTACG GCGAGATCGG CCTGATCCTG TCGATCGACC AGCGCACGGT GAAATTCCAT ATCGTCAATG CGATGCGCAA GCTCAACTCC AGCAACAAGG CGGAGGCCAC CATGAAGGCC TACGCCATCG GCCTGCTCAA CTGA
|
Protein sequence | MHDEREGYLE ILSRITTEEE FFSLVLEICG NYGFEFFSFG ARAPFPLTAP KYHFLSNYPG EWKSRYISED YTSIDPIVRH GLLEYTPLIW NGEDFQENRF FWEEALHHGI RHGWSIPVRG KYGLISMLSL VRSSESIAAT EILEKESFLL WITSMLQATF GDLLAPRIVP ESNVRLTARE TEMLKWTAVG KTYGEIGLIL SIDQRTVKFH IVNAMRKLNS SNKAEATMKA YAIGLLN
|
| |