Gene Bamb_4116 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBamb_4116 
Symbol 
ID4313011 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia ambifaria AMMD 
KingdomBacteria 
Replicon accessionNC_008391 
Strand
Start bp1038825 
End bp1039544 
Gene Length720 bp 
Protein Length239 aa 
Translation table11 
GC content64% 
IMG OID638151957 
ProductLuxR family transcriptional regulator 
Protein accessionYP_776003 
Protein GI115358865 
COG category[K] Transcription
[T] Signal transduction mechanisms 
COG ID[COG2197] Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value0.0201758 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.00877352 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGGAATTAC GCTGGCAGGA TGCCTACCAA CAATTCAGTG CCGCGGAAGA CGAGCAGCAG 
CTCTTCCAGC GGATCGCTGC CTATTCTAAA CGCCTCGGCT TCGAATATTG CTGTTACGGC
ATTCGCGTGC CGCTGCCCGT ATCGAAGCCG GCCGTCGCGA TCTTCAATAC CTATCCGGAC
GGCTGGATGG CGCGCTACCA GGCGCAGAAC TACATCGAGA TCGATTCGAC GGTTCGCGAC
GGCGCGATGA GCACCAACAT GATCGTGTGG CCGGACGTCG ACCGGATCGA CCCGTGCCCG
TTGTGGCAGG ACGCGCGCGA CTACGGGCTG TCGGTGGGCG TTGCGCAGTC GAGCTGGGCG
GCGCGCGGCG CGTTCGGGCT GCTGAGCATC GCCCGTCATG CGGACCGGCT CACGCCAGCC
GAGATCAACA TGCTGACGCT GCAGACAAAC TGGCTCGCGA ACCTGTCGCA TTCGCTGATG
AGCCGCTTCA TGCTGCCGAA GCTGTCGCCG GAGTCGAGCG TCACGCTGAC CGCACGCGAG
CGCGAGGTGC TGCGCTGGAC GGCCGAAGGC AAGACCGCGT GCGAGATCGG CCAGATCCTC
AGCATCTCGG AGCGCACGGT CAATTTCCAC GTGAACAACA TCCTCGAGAA GCTCGGCGCG
ACGAACAAGG TCCAGGCGGT CGTCAAGGCG ATCGGGGCGG GACTCATCGA CACGCCCTGA
 
Protein sequence
MELRWQDAYQ QFSAAEDEQQ LFQRIAAYSK RLGFEYCCYG IRVPLPVSKP AVAIFNTYPD 
GWMARYQAQN YIEIDSTVRD GAMSTNMIVW PDVDRIDPCP LWQDARDYGL SVGVAQSSWA
ARGAFGLLSI ARHADRLTPA EINMLTLQTN WLANLSHSLM SRFMLPKLSP ESSVTLTARE
REVLRWTAEG KTACEIGQIL SISERTVNFH VNNILEKLGA TNKVQAVVKA IGAGLIDTP