Gene Sde_3500 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSde_3500 
Symbol 
ID3966342 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSaccharophagus degradans 2-40 
KingdomBacteria 
Replicon accessionNC_007912 
Strand
Start bp4455673 
End bp4456416 
Gene Length744 bp 
Protein Length247 aa 
Translation table11 
GC content42% 
IMG OID637922597 
ProductLuxR family transcriptional regulator 
Protein accessionYP_528967 
Protein GI90023140 
COG category[K] Transcription 
COG ID[COG2771] DNA-binding HTH domain-containing proteins 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones36 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones16 
Fosmid unclonability p-value0.547243 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGAGCAAT TAGATTACGC AGAGTTGTGT TCTGCATTAT GTGAAGCAAC CGATGAGGAA 
ACGCTAAAGG AACTATGCCT TAAGTTTTGT GAGTTGGTGG GGTTTGAGTT CTATATTTTT
GGCATTATTT CTAGTGCCTC TTCGCTTAGT AGCCCTACAA TATCTACAAT AAGTAACTAT
CCAGATGAAT GGTTTAAAAA CTATTTTGAA GAGGGAATGC AGCGGCACGA TCCTGTAGTG
CGCTACTGCA TGCAAAATAC ATCTGCAATT CGCTGGCGCC AATTAATGGA TCTAGAGCAC
TATGTAGATG CAATAGGCGA AAAAATAATG ATTCGCGCTT CAGAATCCGG TTTGTGTGAC
GGGTTATCTA TTCCCATAAA AGCCCCTAGT GGCGAGATAG CTATATTTAG CTTGGCCAGC
AATCGCGAAG AGGGCTTGAA TCAACGCATT AACGCGTGTT TACCTTTTGC ACAATCATTC
GGAACGCAAG TGTTTGAATG TTACTCTGCT TTAATGTTAA AGCTTGCGCA AAATAAGCAA
ACCCACCTTA CTGCTCGCGA GAAAGAAAGT TTGTTTTGGG CCTGTGAAGG TAAAACCACA
TGGGAGATAT CCAAAATACT TGATGTAAGT GAGCGCACCG TTATTTTTCA TCTCTCTAGT
GCTACGTCAA AGCTTGGGGC GGTTAATCGT CAGCATGCGG TTGCTAAGGC AATTCTTAGT
GGTTTAATTA AGCCCACTCT GTAA
 
Protein sequence
MEQLDYAELC SALCEATDEE TLKELCLKFC ELVGFEFYIF GIISSASSLS SPTISTISNY 
PDEWFKNYFE EGMQRHDPVV RYCMQNTSAI RWRQLMDLEH YVDAIGEKIM IRASESGLCD
GLSIPIKAPS GEIAIFSLAS NREEGLNQRI NACLPFAQSF GTQVFECYSA LMLKLAQNKQ
THLTAREKES LFWACEGKTT WEISKILDVS ERTVIFHLSS ATSKLGAVNR QHAVAKAILS
GLIKPTL