Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RS01929 |
Symbol | RSp0778 |
ID | 1223085 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ralstonia solanacearum GMI1000 |
Kingdom | Bacteria |
Replicon accession | NC_003296 |
Strand | + |
Start bp | 978998 |
End bp | 979744 |
Gene Length | 747 bp |
Protein Length | 248 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 637240638 |
Product | transcriptional activator of quorum sensing autoinducer synthesis transcription regulator protein |
Protein accession | NP_522339 |
Protein GI | 17548999 |
COG category | [K] Transcription |
COG ID | [COG2771] DNA-binding HTH domain-containing proteins |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 19 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 16 |
Fosmid unclonability p-value | 0.746701 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | TTGAGCCCCA CCATAGAAAT CGAGATCGTC ATGAAAAATT GGCAAGAAGA TCTGCTGGAT ATTTTCTCCG ACGCGCAGGC GAGCACGTCG GACGTGTTTG AGCACATCGA GGCGGCGGCG CTGGCGCTGG GGTTCGAGCA TGTCGCCTAT GGCTTCAAGG CACCGCTGCC CCTGAGCGAG CCCAAGGTGG TCTTGCTGAA CAACTACCCG CAGGCCTGGC GCGCGCGCTA TCTGGAGGCC GGCTACCTCC ACGTCGACCC GAGCGTTGCG CAGGCGTGCC GATCGCAGGC GCCGATCGTC TGGTCCGACC GGTTGTTTCA GGACGTGCCC GCGCTATGGG ATGAGGCGAA GGCGCACGGG CTGCGGGTCG GCTGGGCGCA ATCGAGCCTG GACAGCCTGG GGGTGGGCGG CATGCTCAGC CTGTCCCGCT CGTGCGAGCC GCTATCGGCG CGGGAGCTCG CCGAGAACAC GCGCCGGATG CAGTGGCTCG CGCATATGGC GCACGTGGCC CTGTCGCGGC TGCTGCGGGC GGACGTGGCC GGATATTCCG ACGATAACCT GACCAACCGC GAGGTGGAGG TCATGAAGTG GACGGCCGAC GGCAAGTCGG CGCAGGACAT TGCGGACATC CTGGCCATCT CCAAGAACAC AGTGGATTTT CACGTGAAGA ACGCCGTCAA GAAGCTGCAC GCGGTCAACA AGACCGCGGC GGTCGTGCGC GCCGCCATGC TGGGGTATCT GTTCTGA
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Protein sequence | MSPTIEIEIV MKNWQEDLLD IFSDAQASTS DVFEHIEAAA LALGFEHVAY GFKAPLPLSE PKVVLLNNYP QAWRARYLEA GYLHVDPSVA QACRSQAPIV WSDRLFQDVP ALWDEAKAHG LRVGWAQSSL DSLGVGGMLS LSRSCEPLSA RELAENTRRM QWLAHMAHVA LSRLLRADVA GYSDDNLTNR EVEVMKWTAD GKSAQDIADI LAISKNTVDF HVKNAVKKLH AVNKTAAVVR AAMLGYLF
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