| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPD_0402 |
|---|
| Symbol | |
|---|
| ID | 4020868 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris BisB5 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007958 |
|---|
| Strand | + |
|---|
| Start bp | 468696 |
|---|
| End bp | 469424 |
|---|
| Gene Length | 729 bp |
|---|
| Protein Length | 242 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 637960587 |
|---|
| Product | regulatory protein, LuxR |
|---|
| Protein accession | YP_567541 |
|---|
| Protein GI | 91974882 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG2771] DNA-binding HTH domain-containing proteins |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 27 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 28 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCGGCCG ACGAAGGCAA TCAATGGGGA CGGCGGGCGC TGGAATTCGT CGACGCCGCG
GATCGGCTCG ACGGTCCCTC GCTGATTCGC CAGTTCGAAA CCCATATCGC CAGCGGCGGC
TTCAGCGCCT ACATCATGGC CGGCCTGCCT TCGCCCGGAG CCGGGCTCGC CGACCTGACC
CTCGCCAATG GCTGGCCCCG CGGTTGGTTC GAACTCTACG TCCGCGAGAA CTACATCGCC
GTCGATCCGG TGCCGCGCCA CGGCGCAACG ACGGTGCAGC CGTTCGAATG GTCGGAAGCG
CCCTACGATC GCAAGCAGAA TCGCGCCGCC CACAAGGTGA TGACCCACGC CACCGAATTC
GGCCTGGTTC GCGGTTACTG CATTCCGCTG CATTACGATG AGGGCGGCGC AGTGATCAGC
ATGGCCGGCG ACCAGCCGGA CCTCGATCCG GTCGCCAAGG GCGCAATGCA GCTGATCGGC
GTCTATGCGC ATAACCGGAT TCGCTCATTG CACCGGCCGA AGCCGCAACG GCGGCTTCTG
ACCTCGCGCG AATGCGAAAT TCTACTGTGG GCCGCGCACG GCAAGACCGC ATGGGAGATC
TCGATCATCC TCCACATCGC CGAGCGCACC GTCAAATTTC ATCTGATCGA GGCTTCCAAG
AAGCTCAACG CGGTGAACCG TACCGCGGCT GTCGCCAAGG CGCTCGCGTT CGGCCTGATC
AAGCTCTGA
|
|---|
| Protein sequence | MSADEGNQWG RRALEFVDAA DRLDGPSLIR QFETHIASGG FSAYIMAGLP SPGAGLADLT
LANGWPRGWF ELYVRENYIA VDPVPRHGAT TVQPFEWSEA PYDRKQNRAA HKVMTHATEF
GLVRGYCIPL HYDEGGAVIS MAGDQPDLDP VAKGAMQLIG VYAHNRIRSL HRPKPQRRLL
TSRECEILLW AAHGKTAWEI SIILHIAERT VKFHLIEASK KLNAVNRTAA VAKALAFGLI
KL
|
|---|
| |