| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VSAL_II0958 |
|---|
| Symbol | luxR |
|---|
| ID | 6962514 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Aliivibrio salmonicida LFI1238 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011313 |
|---|
| Strand | + |
|---|
| Start bp | 1048076 |
|---|
| End bp | 1048819 |
|---|
| Gene Length | 744 bp |
|---|
| Protein Length | 247 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 33% |
|---|
| IMG OID | 643382216 |
|---|
| Product | transcriptional activator protein LuxR |
|---|
| Protein accession | YP_002265247 |
|---|
| Protein GI | 209809708 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG2771] DNA-binding HTH domain-containing proteins |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | TTGAACCTAG TCAACATAAA CGTAACGCTT GAAATCATCA ATAAAATTCG ATTATCTCAA
ACCAACAACG ACATGAGTTT ATGCCTACAA GAACTAACCA AAATACTCCA TTGCGAGTAT
TATTTATTAG CTATTATTAG TCAAAAAACC ATGATCAAAT CTGATATTAA AATTTTAGAT
AACTACCCAT TATATTGGCG AAACTATTAC GATGAAGCGA ATCTTATTAA AGATGACCCT
ATTGTTGACT ATAGCTTTTC TCATCACTCC CCTATTAATT GGAGTATTTT TGAAAAACAA
AAAAAAATGA GTAATCAAAT AAATGTGATT GAAGAAGCTA AAATATCAGG GTTATATTCT
GGATTCAGTT TCCCTATTCA TACAAAGGAT GGGGGGTTTG GCATGATAAG TTTTGCGAGT
TCTCAAAAAG AAAAGTATAT CGATAACCTT TTTCTTAATG CCTGCATGAG CGTTCCCTTA
ATTCTTCCTG AATTACTAGA TAGCAATCAG CGAATAACTA AAGAAGATCA ACAGGTACAC
ACAAAGTTAA CAAAACGAGA AAAAGAATGC TTAATTTGGA GTTGTGAAGG AAAAAGTCGA
TGGGAAATTT CAAAAATATT AGGTTGCTCT GAACGAACGG TTACCTTTCA CTTAGCAAAC
TCACAGCTAA AGCTTGGAGC AAATAACCGC TGCCAAAGTA TATCAAAAGC GATCTTAACA
AGAGCAATGA ACCCGTTATA TTAA
|
|---|
| Protein sequence | MNLVNINVTL EIINKIRLSQ TNNDMSLCLQ ELTKILHCEY YLLAIISQKT MIKSDIKILD
NYPLYWRNYY DEANLIKDDP IVDYSFSHHS PINWSIFEKQ KKMSNQINVI EEAKISGLYS
GFSFPIHTKD GGFGMISFAS SQKEKYIDNL FLNACMSVPL ILPELLDSNQ RITKEDQQVH
TKLTKREKEC LIWSCEGKSR WEISKILGCS ERTVTFHLAN SQLKLGANNR CQSISKAILT
RAMNPLY
|
|---|
| |