More than 300 homologs were found in PanDaTox collection
for query gene RPD_4172 on replicon NC_007958
Organism: Rhodopseudomonas palustris BisB5



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_007778  RPB_4274  methyl-accepting chemotaxis sensory transducer  84.76 
 
 
583 aa  892    Rhodopseudomonas palustris HaA2  Bacteria  normal  normal 
 
 
-
 
NC_011004  Rpal_1286  methyl-accepting chemotaxis sensory transducer  82.19 
 
 
583 aa  900    Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_009485  BBta_6911  methyl-accepting chemotaxis sensory transducer  67.51 
 
 
584 aa  751    Bradyrhizobium sp. BTAi1  Bacteria  normal  0.900499  normal  0.411338 
 
 
-
 
NC_007925  RPC_4808  methyl-accepting chemotaxis sensory transducer  71.65 
 
 
584 aa  779    Rhodopseudomonas palustris BisB18  Bacteria  normal  normal 
 
 
-
 
NC_007958  RPD_4172  methyl-accepting chemotaxis sensory transducer  100 
 
 
584 aa  1186    Rhodopseudomonas palustris BisB5  Bacteria  normal  normal 
 
 
-
 
NC_010511  M446_6117  methyl-accepting chemotaxis sensory transducer  35.73 
 
 
713 aa  304  4.0000000000000003e-81  Methylobacterium sp. 4-46  Bacteria  normal  0.140639  normal 
 
 
-
 
NC_012850  Rleg_1014  methyl-accepting chemotaxis sensory transducer  50.86 
 
 
482 aa  201  1.9999999999999998e-50  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal 
 
 
-
 
NC_010681  Bphyt_2304  methyl-accepting chemotaxis sensory transducer  48.54 
 
 
468 aa  198  2.0000000000000003e-49  Burkholderia phytofirmans PsJN  Bacteria  normal  normal  0.816033 
 
 
-
 
NC_010622  Bphy_1275  methyl-accepting chemotaxis sensory transducer  49.12 
 
 
470 aa  191  2e-47  Burkholderia phymatum STM815  Bacteria  normal  normal  0.233006 
 
 
-
 
NC_008825  Mpe_A3082  methyl-accepting chemotaxis sensory transducer  43.01 
 
 
448 aa  191  2.9999999999999997e-47  Methylibium petroleiphilum PM1  Bacteria  normal  0.802467  normal  0.530433 
 
 
-
 
NC_010524  Lcho_1623  methyl-accepting chemotaxis sensory transducer  46.81 
 
 
454 aa  191  4e-47  Leptothrix cholodnii SP-6  Bacteria  n/a    hitchhiker  0.00717627 
 
 
-
 
NC_007951  Bxe_A1954  methyl-accepting chemotaxis sensory transducer  47.37 
 
 
511 aa  191  4e-47  Burkholderia xenovorans LB400  Bacteria  normal  0.249155  normal  0.44726 
 
 
-
 
NC_012856  Rpic12D_0496  methyl-accepting chemotaxis sensory transducer  46.29 
 
 
470 aa  191  4e-47  Ralstonia pickettii 12D  Bacteria  normal  normal  0.453159 
 
 
-
 
NC_010682  Rpic_0509  methyl-accepting chemotaxis sensory transducer  46.29 
 
 
470 aa  189  1e-46  Ralstonia pickettii 12J  Bacteria  normal  0.856427  normal  0.10181 
 
 
-
 
NC_008340  Mlg_1152  methyl-accepting chemotaxis sensory transducer  47.43 
 
 
484 aa  189  1e-46  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  0.26629  normal 
 
 
-
 
NC_007643  Rru_A1554  methyl-accepting chemotaxis sensory transducer  46.86 
 
 
495 aa  186  7e-46  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  n/a   
 
 
-
 
NC_007802  Jann_2227  methyl-accepting chemotaxis sensory transducer  44.32 
 
 
481 aa  175  1.9999999999999998e-42  Jannaschia sp. CCS1  Bacteria  normal  0.237535  normal 
 
 
-
 
NC_009485  BBta_6912  methyl-accepting chemotaxis sensory transducer  42.05 
 
 
475 aa  173  9e-42  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.18628  normal  0.2896 
 
 
-
 
NC_008789  Hhal_0535  methyl-accepting chemotaxis sensory transducer  42.69 
 
 
487 aa  167  5e-40  Halorhodospira halophila SL1  Bacteria  normal  n/a   
 
 
-
 
NC_010511  M446_6192  methyl-accepting chemotaxis sensory transducer  30.27 
 
 
573 aa  164  4.0000000000000004e-39  Methylobacterium sp. 4-46  Bacteria  normal  0.361355  normal 
 
 
-
 
NC_008543  Bcen2424_5132  methyl-accepting chemotaxis sensory transducer  38.29 
 
 
468 aa  153  1e-35  Burkholderia cenocepacia HI2424  Bacteria  normal  0.202601  normal 
 
 
-
 
NC_008061  Bcen_3236  methyl-accepting chemotaxis sensory transducer  38.29 
 
 
476 aa  152  1e-35  Burkholderia cenocepacia AU 1054  Bacteria  normal  0.315544  n/a   
 
 
-
 
NC_010515  Bcenmc03_5149  methyl-accepting chemotaxis sensory transducer  38.29 
 
 
468 aa  152  2e-35  Burkholderia cenocepacia MC0-3  Bacteria  normal  0.853292  normal 
 
 
-
 
NC_011894  Mnod_6711  methyl-accepting chemotaxis sensory transducer  31.09 
 
 
568 aa  148  3e-34  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_009439  Pmen_4367  methyl-accepting chemotaxis sensory transducer  40.13 
 
 
524 aa  140  7.999999999999999e-32  Pseudomonas mendocina ymp  Bacteria  normal  normal 
 
 
-
 
NC_003910  CPS_3042  methyl-accepting chemotaxis protein  34.32 
 
 
527 aa  137  5e-31  Colwellia psychrerythraea 34H  Bacteria  normal  n/a   
 
 
-
 
NC_011138  MADE_03575  methyl-accepting chemotaxis protein  33.33 
 
 
525 aa  137  5e-31  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  n/a   
 
 
-
 
NC_007492  Pfl01_3326  chemotaxis sensory transducer  35.68 
 
 
534 aa  136  9e-31  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal 
 
 
-
 
NC_003910  CPS_4961  methyl-accepting chemotaxis protein  35.95 
 
 
527 aa  136  9.999999999999999e-31  Colwellia psychrerythraea 34H  Bacteria  normal  n/a   
 
 
-
 
NC_007643  Rru_A0158  methyl-accepting chemotaxis sensory transducer  39.26 
 
 
561 aa  136  9.999999999999999e-31  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  n/a   
 
 
-
 
NC_007005  Psyr_3261  chemotaxis sensory transducer  38.16 
 
 
534 aa  135  3e-30  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal 
 
 
-
 
NC_009654  Mmwyl1_1460  methyl-accepting chemotaxis sensory transducer  32.05 
 
 
534 aa  134  3.9999999999999996e-30  Marinomonas sp. MWYL1  Bacteria  normal  0.695651  normal 
 
 
-
 
NC_009483  Gura_4170  methyl-accepting chemotaxis sensory transducer  37.8 
 
 
578 aa  134  6e-30  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_008463  PA14_55750  putative chemotaxis transducer  36.84 
 
 
538 aa  132  2.0000000000000002e-29  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal 
 
 
-
 
NC_011146  Gbem_2381  methyl-accepting chemotaxis sensory transducer  38.12 
 
 
578 aa  130  5.0000000000000004e-29  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_009656  PSPA7_4857  methyl-accepting chemotaxis protein  36.84 
 
 
535 aa  130  7.000000000000001e-29  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_007925  RPC_1795  methyl-accepting chemotaxis sensory transducer  34.15 
 
 
561 aa  130  9.000000000000001e-29  Rhodopseudomonas palustris BisB18  Bacteria  normal  0.432423  normal  0.0230577 
 
 
-
 
NC_008345  Sfri_1808  methyl-accepting chemotaxis sensory transducer  31.15 
 
 
514 aa  129  1.0000000000000001e-28  Shewanella frigidimarina NCIMB 400  Bacteria  normal  n/a   
 
 
-
 
NC_012918  GM21_1837  methyl-accepting chemotaxis sensory transducer  38.12 
 
 
578 aa  130  1.0000000000000001e-28  Geobacter sp. M21  Bacteria  n/a    hitchhiker  0.00718884 
 
 
-
 
NC_004578  PSPTO_3480  methyl-accepting chemotaxis protein  36.18 
 
 
533 aa  128  3e-28  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.0820031  n/a   
 
 
-
 
NC_009052  Sbal_1246  methyl-accepting chemotaxis sensory transducer  36 
 
 
522 aa  127  5e-28  Shewanella baltica OS155  Bacteria  normal  n/a   
 
 
-
 
NC_011663  Sbal223_3064  methyl-accepting chemotaxis sensory transducer  36 
 
 
522 aa  127  6e-28  Shewanella baltica OS223  Bacteria  normal  hitchhiker  0.0000000699577 
 
 
-
 
NC_009665  Shew185_1290  methyl-accepting chemotaxis sensory transducer  36 
 
 
522 aa  127  6e-28  Shewanella baltica OS185  Bacteria  normal  n/a   
 
 
-
 
NC_008321  Shewmr4_1155  methyl-accepting chemotaxis sensory transducer  32.95 
 
 
523 aa  126  1e-27  Shewanella sp. MR-4  Bacteria  normal  normal 
 
 
-
 
NC_008577  Shewana3_1156  methyl-accepting chemotaxis sensory transducer  32.95 
 
 
523 aa  126  1e-27  Shewanella sp. ANA-3  Bacteria  normal  normal 
 
 
-
 
NC_009997  Sbal195_1324  methyl-accepting chemotaxis sensory transducer  35.33 
 
 
522 aa  125  2e-27  Shewanella baltica OS195  Bacteria  normal  normal  0.0159359 
 
 
-
 
NC_010505  Mrad2831_2471  methyl-accepting chemotaxis sensory transducer  34.21 
 
 
718 aa  125  2e-27  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.0242034  normal 
 
 
-
 
NC_008322  Shewmr7_1226  methyl-accepting chemotaxis sensory transducer  32.95 
 
 
523 aa  125  3e-27  Shewanella sp. MR-7  Bacteria  normal  normal 
 
 
-
 
NC_007778  RPB_1977  methyl-accepting chemotaxis sensory transducer  35.59 
 
 
651 aa  124  7e-27  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.064764  normal 
 
 
-
 
NC_009485  BBta_2843  putative histidine kinase, HAMP region  36.07 
 
 
682 aa  123  9e-27  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_007778  RPB_4286  methyl-accepting chemotaxis sensory transducer  32.45 
 
 
563 aa  123  9e-27  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal 
 
 
-
 
NC_007517  Gmet_2939  methyl-accepting chemotaxis sensory transducer  35.95 
 
 
696 aa  123  9.999999999999999e-27  Geobacter metallireducens GS-15  Bacteria  normal  hitchhiker  0.00000015868 
 
 
-
 
NC_007643  Rru_A0718  chemotaxis sensory transducer  41.41 
 
 
669 aa  122  9.999999999999999e-27  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.845917  n/a   
 
 
-
 
NC_008312  Tery_4229  methyl-accepting chemotaxis sensory transducer  44.71 
 
 
1150 aa  122  9.999999999999999e-27  Trichodesmium erythraeum IMS101  Bacteria  normal  normal  0.591053 
 
 
-
 
NC_011004  Rpal_4064  methyl-accepting chemotaxis sensory transducer  33.23 
 
 
651 aa  123  9.999999999999999e-27  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_007958  RPD_3409  chemotaxis sensory transducer  42.86 
 
 
651 aa  123  9.999999999999999e-27  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.304746  normal 
 
 
-
 
NC_009511  Swit_3980  methyl-accepting chemotaxis sensory transducer  34.91 
 
 
468 aa  122  1.9999999999999998e-26  Sphingomonas wittichii RW1  Bacteria  normal  normal  0.330272 
 
 
-
 
NC_009485  BBta_0969  methyl-accepting chemotaxis sensory transducer  32.58 
 
 
562 aa  121  3e-26  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.956339  normal  0.570918 
 
 
-
 
NC_007778  RPB_1317  methyl-accepting chemotaxis sensory transducer  38.39 
 
 
560 aa  122  3e-26  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal  0.14669 
 
 
-
 
NC_009485  BBta_1840  methyl-accepting chemotaxis sensory transducer  34.54 
 
 
561 aa  121  3e-26  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal  0.745103 
 
 
-
 
NC_009485  BBta_0575  methyl-accepting chemotaxis sensory transducer  33.57 
 
 
681 aa  122  3e-26  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_009438  Sputcn32_2723  methyl-accepting chemotaxis sensory transducer  34.67 
 
 
522 aa  121  3e-26  Shewanella putrefaciens CN-32  Bacteria  normal  0.471128  n/a   
 
 
-
 
NC_011146  Gbem_0467  methyl-accepting chemotaxis sensory transducer  38.26 
 
 
693 aa  121  3e-26  Geobacter bemidjiensis Bem  Bacteria  normal  0.285916  n/a   
 
 
-
 
NC_009483  Gura_4401  methyl-accepting chemotaxis sensory transducer  34.87 
 
 
695 aa  121  3.9999999999999996e-26  Geobacter uraniireducens Rf4  Bacteria  normal  0.896591  n/a   
 
 
-
 
NC_009485  BBta_6483  methyl-accepting chemotaxis protein  34.18 
 
 
565 aa  120  4.9999999999999996e-26  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.877741  normal 
 
 
-
 
NC_011004  Rpal_2142  methyl-accepting chemotaxis sensory transducer  37.5 
 
 
428 aa  120  4.9999999999999996e-26  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.293169  n/a   
 
 
-
 
NC_009485  BBta_2901  methyl-accepting chemotaxis sensory transducer  32.95 
 
 
674 aa  120  6e-26  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.14772  normal  0.22504 
 
 
-
 
NC_010506  Swoo_3399  methyl-accepting chemotaxis sensory transducer  30.72 
 
 
526 aa  120  6e-26  Shewanella woodyi ATCC 51908  Bacteria  normal  normal 
 
 
-
 
NC_011004  Rpal_0233  methyl-accepting chemotaxis sensory transducer  36.02 
 
 
563 aa  120  9.999999999999999e-26  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_008347  Mmar10_2039  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  40.98 
 
 
514 aa  119  9.999999999999999e-26  Maricaulis maris MCS10  Bacteria  normal  0.867324  normal  0.91864 
 
 
-
 
NC_008740  Maqu_2839  methyl-accepting chemotaxis sensory transducer  32.93 
 
 
546 aa  120  9.999999999999999e-26  Marinobacter aquaeolei VT8  Bacteria  normal  n/a   
 
 
-
 
NC_007925  RPC_4407  methyl-accepting chemotaxis sensory transducer  35.5 
 
 
566 aa  119  9.999999999999999e-26  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal  0.365939 
 
 
-
 
NC_007958  RPD_0995  chemotaxis sensory transducer  32.25 
 
 
656 aa  119  9.999999999999999e-26  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.880627  normal 
 
 
-
 
NC_011004  Rpal_4271  methyl-accepting chemotaxis sensory transducer  34.3 
 
 
567 aa  119  9.999999999999999e-26  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_011757  Mchl_3907  methyl-accepting chemotaxis sensory transducer  36.36 
 
 
565 aa  120  9.999999999999999e-26  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal 
 
 
-
 
NC_007958  RPD_3581  methyl-accepting chemotaxis sensory transducer  37.01 
 
 
567 aa  119  9.999999999999999e-26  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.0981346  normal  0.985512 
 
 
-
 
NC_007778  RPB_0914  methyl-accepting chemotaxis sensory transducer  34.75 
 
 
689 aa  118  1.9999999999999998e-25  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal  0.497103 
 
 
-
 
NC_008699  Noca_3602  chemotaxis sensory transducer  38.72 
 
 
518 aa  119  1.9999999999999998e-25  Nocardioides sp. JS614  Bacteria  normal  n/a   
 
 
-
 
NC_007925  RPC_4104  methyl-accepting chemotaxis sensory transducer  36.82 
 
 
586 aa  119  1.9999999999999998e-25  Rhodopseudomonas palustris BisB18  Bacteria  normal  0.783692  normal 
 
 
-
 
NC_007964  Nham_1080  methyl-accepting chemotaxis sensory transducer  36.55 
 
 
698 aa  118  3e-25  Nitrobacter hamburgensis X14  Bacteria  normal  0.0139762  n/a   
 
 
-
 
NC_007925  RPC_4527  methyl-accepting chemotaxis sensory transducer  36.49 
 
 
667 aa  118  3e-25  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal  0.527831 
 
 
-
 
NC_007964  Nham_0772  methyl-accepting chemotaxis sensory transducer  38.83 
 
 
561 aa  118  3e-25  Nitrobacter hamburgensis X14  Bacteria  normal  n/a   
 
 
-
 
NC_011004  Rpal_3598  methyl-accepting chemotaxis sensory transducer  32.66 
 
 
672 aa  118  3e-25  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_009485  BBta_2905  putative methyl-accepting chemotaxis protein  35.47 
 
 
542 aa  118  3.9999999999999997e-25  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.234112  normal  0.211145 
 
 
-
 
NC_011004  Rpal_5120  methyl-accepting chemotaxis sensory transducer  35.06 
 
 
563 aa  118  3.9999999999999997e-25  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_011004  Rpal_5144  methyl-accepting chemotaxis sensory transducer  35.16 
 
 
686 aa  117  5e-25  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_009485  BBta_7334  putative methyl-accepting chemotaxis protein  46.41 
 
 
685 aa  117  6e-25  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.382599  normal 
 
 
-
 
NC_007643  Rru_A3465  methyl-accepting chemotaxis sensory transducer  37.1 
 
 
419 aa  117  6e-25  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.61828  n/a   
 
 
-
 
NC_011004  Rpal_4787  methyl-accepting chemotaxis sensory transducer  37.34 
 
 
561 aa  117  6e-25  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.708956  n/a   
 
 
-
 
NC_002939  GSU0582  methyl-accepting chemotaxis protein  37.5 
 
 
696 aa  117  6.9999999999999995e-25  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_007925  RPC_3161  methyl-accepting chemotaxis sensory transducer  29.93 
 
 
731 aa  117  6.9999999999999995e-25  Rhodopseudomonas palustris BisB18  Bacteria  normal  0.072786  normal 
 
 
-
 
NC_010172  Mext_0809  chemotaxis sensory transducer  37.99 
 
 
717 aa  117  6.9999999999999995e-25  Methylobacterium extorquens PA1  Bacteria  normal  normal 
 
 
-
 
NC_007406  Nwi_2996  methyl-accepting chemotaxis protein  36.29 
 
 
698 aa  117  7.999999999999999e-25  Nitrobacter winogradskyi Nb-255  Bacteria  normal  normal 
 
 
-
 
NC_007643  Rru_A2484  chemotaxis sensory transducer  37.19 
 
 
563 aa  117  7.999999999999999e-25  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.1562  n/a   
 
 
-
 
NC_009485  BBta_6635  methyl-accepting chemotaxis protein  33.07 
 
 
565 aa  117  7.999999999999999e-25  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.459746  normal  0.104137 
 
 
-
 
NC_013521  Sked_27420  methyl-accepting chemotaxis protein  40.71 
 
 
540 aa  117  7.999999999999999e-25  Sanguibacter keddieii DSM 10542  Bacteria  normal  0.141989  normal 
 
 
-
 
NC_011757  Mchl_0752  methyl-accepting chemotaxis sensory transducer  37.99 
 
 
716 aa  117  7.999999999999999e-25  Methylobacterium chloromethanicum CM4  Bacteria  normal  0.713683  normal 
 
 
-
 
NC_009943  Dole_0648  methyl-accepting chemotaxis sensory transducer  30.61 
 
 
425 aa  116  8.999999999999998e-25  Desulfococcus oleovorans Hxd3  Bacteria  hitchhiker  0.0000000628943  n/a   
 
 
-
 
NC_008699  Noca_1293  chemotaxis sensory transducer  37.87 
 
 
542 aa  116  8.999999999999998e-25  Nocardioides sp. JS614  Bacteria  normal  0.320257  n/a   
 
 
-
 
NC_011004  Rpal_2757  methyl-accepting chemotaxis sensory transducer  33.08 
 
 
561 aa  116  8.999999999999998e-25  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.0630329  n/a   
 
 
-
 
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