| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_1623 |
|---|
| Symbol | |
|---|
| ID | 6160494 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Leptothrix cholodnii SP-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010524 |
|---|
| Strand | + |
|---|
| Start bp | 1723995 |
|---|
| End bp | 1725359 |
|---|
| Gene Length | 1365 bp |
|---|
| Protein Length | 454 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 641664377 |
|---|
| Product | methyl-accepting chemotaxis sensory transducer |
|---|
| Protein accession | YP_001790655 |
|---|
| Protein GI | 171058306 |
|---|
| COG category | [N] Cell motility
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG0840] Methyl-accepting chemotaxis protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 23 |
|---|
| Fosmid unclonability p-value | 0.00717627 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGTTTGCCT TCCTGCGTGA GCGTGCACCC GCACCCCGGA CCGTTCGATC CCATGCCCAT
GCAGATACCG AGGTCGGCGA CCGCCATGCC GTCGACAACG CCCTGGTGCA GCGCCTGGCG
AGCCAGGTGT CCCAGATCGG CCGCGACGCC GCGCAGGCGC GTGGTGCGAT CGAGGACACC
CAGAAGCTGG TCGTCAGCCA GGTCGAGTCG CTGGGCCAGC TCAACCAGCA GCTCGAGCAC
GTGCAGGGTG CCCAGCTGGC CATCGGTGAC GCCACGGCCG CCAGCGTGAA GGCGGTGGCG
CATGCCCGCG CGGTGGCGCA GCAGGTGGCC TCCGAGGTGG CCGGCATCGT GTCGGTGCTG
CAGCAGGTCT CGACCGCCGC CGCCGACATC ACGCAGATCG CCCTGCAGAC CCGGCTGGTC
GCGTTCAACG CGATGGTCGA GGCCAAGCGG GCGGGCGAGG CCGGACGCGG TTTCGGCGTG
GTCGCCGATG CGGTGAAGGA CCTGGCCGGC CGCGTCGAGG TGTCGTCCAA GACCATCATG
GGCACGCTCA CCCAGCTCGA CCAGCGCATC GAGGCGTTTT CGCAGGACAT CCGGGTCGAA
CCCGGCGTGG AGCCGACCCG CGGCATCCAC CTGGCGTTCG CCCATGTCGA GGCCGGCGTG
GTGCGCATCA ACGATGCCGC CACCGCCAGC CGCAGCACCT GCGCGGCGGT CAGCGACAAG
ACCCAGCACC TCGGCCAGGA GATGCAGCAC GCCATGGTCA GCCTCGACGC CGCGATGGGC
TGCAGCGACC GCTTCCTGAA CCTGTCCGAA CAGCTGATCG ACGAGCTCGC CGGCAGCGGC
GCGCAGACCG AGGACACGCC GTTCATCCAG GCCGTGCAGG ACGGCGCGGC CCGCATCGCG
GCGACCTTCG AGCAGGCGCT GGCCGACGGC CGCATCACGC TGGCCGACCT GTTCGACGAC
CAGTACCGCC CGATCGCCAA CACCCATCCG GCGCAGCACC TGACGCGTCA CGTGGCCTTG
ACCGATCAGC TGCTGCCGCC GATCCAGGAG CCGATGCTCG GCTTCAGCGA CAAGGTGGTG
TTCTGCATCG CCACCGACCG CAACGGCTAC ATCGCCACCC ACAACCGCAA GTACTGCCAC
CCGCAGCGCG GCGATCTGGC GTGGGACACC GCCAACAGCC GCTACCGGCG CATCTTCAAC
GACCGCACCG GCCTGGCCTC GGCGCGCAAC CAGCGCCCGT TCCTGCTGCA GACCTACCGG
CGCGACATGG GCGGCGGCCA GTACGTGCTG CTCAAGGAGG CGTCGGCGCC GATCATGGTG
GCCGGCCGGC ACTGGGGTGG CCTGCGCTTC GCCTACAAGT TCTGA
|
|---|
| Protein sequence | MFAFLRERAP APRTVRSHAH ADTEVGDRHA VDNALVQRLA SQVSQIGRDA AQARGAIEDT
QKLVVSQVES LGQLNQQLEH VQGAQLAIGD ATAASVKAVA HARAVAQQVA SEVAGIVSVL
QQVSTAAADI TQIALQTRLV AFNAMVEAKR AGEAGRGFGV VADAVKDLAG RVEVSSKTIM
GTLTQLDQRI EAFSQDIRVE PGVEPTRGIH LAFAHVEAGV VRINDAATAS RSTCAAVSDK
TQHLGQEMQH AMVSLDAAMG CSDRFLNLSE QLIDELAGSG AQTEDTPFIQ AVQDGAARIA
ATFEQALADG RITLADLFDD QYRPIANTHP AQHLTRHVAL TDQLLPPIQE PMLGFSDKVV
FCIATDRNGY IATHNRKYCH PQRGDLAWDT ANSRYRRIFN DRTGLASARN QRPFLLQTYR
RDMGGGQYVL LKEASAPIMV AGRHWGGLRF AYKF
|
|---|
| |