More than 300 homologs were found in PanDaTox collection
for query gene RPB_4274 on replicon NC_007778
Organism: Rhodopseudomonas palustris HaA2



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_011004  Rpal_1286  methyl-accepting chemotaxis sensory transducer  82.5 
 
 
583 aa  899    Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_007958  RPD_4172  methyl-accepting chemotaxis sensory transducer  84.76 
 
 
584 aa  928    Rhodopseudomonas palustris BisB5  Bacteria  normal  normal 
 
 
-
 
NC_007778  RPB_4274  methyl-accepting chemotaxis sensory transducer  100 
 
 
583 aa  1174    Rhodopseudomonas palustris HaA2  Bacteria  normal  normal 
 
 
-
 
NC_009485  BBta_6911  methyl-accepting chemotaxis sensory transducer  68.89 
 
 
584 aa  764    Bradyrhizobium sp. BTAi1  Bacteria  normal  0.900499  normal  0.411338 
 
 
-
 
NC_007925  RPC_4808  methyl-accepting chemotaxis sensory transducer  72.7 
 
 
584 aa  791    Rhodopseudomonas palustris BisB18  Bacteria  normal  normal 
 
 
-
 
NC_010511  M446_6117  methyl-accepting chemotaxis sensory transducer  34.25 
 
 
713 aa  284  3.0000000000000004e-75  Methylobacterium sp. 4-46  Bacteria  normal  0.140639  normal 
 
 
-
 
NC_012850  Rleg_1014  methyl-accepting chemotaxis sensory transducer  50 
 
 
482 aa  209  1e-52  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal 
 
 
-
 
NC_008825  Mpe_A3082  methyl-accepting chemotaxis sensory transducer  43.81 
 
 
448 aa  200  7e-50  Methylibium petroleiphilum PM1  Bacteria  normal  0.802467  normal  0.530433 
 
 
-
 
NC_007643  Rru_A1554  methyl-accepting chemotaxis sensory transducer  49.71 
 
 
495 aa  198  3e-49  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  n/a   
 
 
-
 
NC_010524  Lcho_1623  methyl-accepting chemotaxis sensory transducer  50.58 
 
 
454 aa  196  1e-48  Leptothrix cholodnii SP-6  Bacteria  n/a    hitchhiker  0.00717627 
 
 
-
 
NC_010681  Bphyt_2304  methyl-accepting chemotaxis sensory transducer  47.95 
 
 
468 aa  193  7e-48  Burkholderia phytofirmans PsJN  Bacteria  normal  normal  0.816033 
 
 
-
 
NC_010622  Bphy_1275  methyl-accepting chemotaxis sensory transducer  50.29 
 
 
470 aa  191  2.9999999999999997e-47  Burkholderia phymatum STM815  Bacteria  normal  normal  0.233006 
 
 
-
 
NC_008340  Mlg_1152  methyl-accepting chemotaxis sensory transducer  46.86 
 
 
484 aa  188  2e-46  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  0.26629  normal 
 
 
-
 
NC_007951  Bxe_A1954  methyl-accepting chemotaxis sensory transducer  46.2 
 
 
511 aa  187  3e-46  Burkholderia xenovorans LB400  Bacteria  normal  0.249155  normal  0.44726 
 
 
-
 
NC_010682  Rpic_0509  methyl-accepting chemotaxis sensory transducer  45.71 
 
 
470 aa  185  2.0000000000000003e-45  Ralstonia pickettii 12J  Bacteria  normal  0.856427  normal  0.10181 
 
 
-
 
NC_012856  Rpic12D_0496  methyl-accepting chemotaxis sensory transducer  31.1 
 
 
470 aa  185  2.0000000000000003e-45  Ralstonia pickettii 12D  Bacteria  normal  normal  0.453159 
 
 
-
 
NC_007802  Jann_2227  methyl-accepting chemotaxis sensory transducer  42.06 
 
 
481 aa  184  4.0000000000000006e-45  Jannaschia sp. CCS1  Bacteria  normal  0.237535  normal 
 
 
-
 
NC_009485  BBta_6912  methyl-accepting chemotaxis sensory transducer  43.2 
 
 
475 aa  170  6e-41  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.18628  normal  0.2896 
 
 
-
 
NC_010511  M446_6192  methyl-accepting chemotaxis sensory transducer  29.74 
 
 
573 aa  165  2.0000000000000002e-39  Methylobacterium sp. 4-46  Bacteria  normal  0.361355  normal 
 
 
-
 
NC_008789  Hhal_0535  methyl-accepting chemotaxis sensory transducer  28.1 
 
 
487 aa  161  3e-38  Halorhodospira halophila SL1  Bacteria  normal  n/a   
 
 
-
 
NC_008543  Bcen2424_5132  methyl-accepting chemotaxis sensory transducer  39.58 
 
 
468 aa  159  2e-37  Burkholderia cenocepacia HI2424  Bacteria  normal  0.202601  normal 
 
 
-
 
NC_008061  Bcen_3236  methyl-accepting chemotaxis sensory transducer  39.58 
 
 
476 aa  158  2e-37  Burkholderia cenocepacia AU 1054  Bacteria  normal  0.315544  n/a   
 
 
-
 
NC_010515  Bcenmc03_5149  methyl-accepting chemotaxis sensory transducer  39.58 
 
 
468 aa  157  3e-37  Burkholderia cenocepacia MC0-3  Bacteria  normal  0.853292  normal 
 
 
-
 
NC_003910  CPS_3042  methyl-accepting chemotaxis protein  33.73 
 
 
527 aa  142  1.9999999999999998e-32  Colwellia psychrerythraea 34H  Bacteria  normal  n/a   
 
 
-
 
NC_011146  Gbem_2381  methyl-accepting chemotaxis sensory transducer  40.62 
 
 
578 aa  141  3.9999999999999997e-32  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_012918  GM21_1837  methyl-accepting chemotaxis sensory transducer  40.62 
 
 
578 aa  140  6e-32  Geobacter sp. M21  Bacteria  n/a    hitchhiker  0.00718884 
 
 
-
 
NC_009439  Pmen_4367  methyl-accepting chemotaxis sensory transducer  40.79 
 
 
524 aa  140  7e-32  Pseudomonas mendocina ymp  Bacteria  normal  normal 
 
 
-
 
NC_008463  PA14_55750  putative chemotaxis transducer  38.16 
 
 
538 aa  139  1e-31  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal 
 
 
-
 
NC_007005  Psyr_3261  chemotaxis sensory transducer  38.82 
 
 
534 aa  138  3.0000000000000003e-31  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal 
 
 
-
 
NC_009654  Mmwyl1_1460  methyl-accepting chemotaxis sensory transducer  38.96 
 
 
534 aa  138  3.0000000000000003e-31  Marinomonas sp. MWYL1  Bacteria  normal  0.695651  normal 
 
 
-
 
NC_011138  MADE_03575  methyl-accepting chemotaxis protein  32.05 
 
 
525 aa  138  3.0000000000000003e-31  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  n/a   
 
 
-
 
NC_009656  PSPA7_4857  methyl-accepting chemotaxis protein  38.16 
 
 
535 aa  137  4e-31  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_007643  Rru_A0158  methyl-accepting chemotaxis sensory transducer  38.08 
 
 
561 aa  137  7.000000000000001e-31  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  n/a   
 
 
-
 
NC_003910  CPS_4961  methyl-accepting chemotaxis protein  34.64 
 
 
527 aa  135  1.9999999999999998e-30  Colwellia psychrerythraea 34H  Bacteria  normal  n/a   
 
 
-
 
NC_008322  Shewmr7_1226  methyl-accepting chemotaxis sensory transducer  34.66 
 
 
523 aa  135  1.9999999999999998e-30  Shewanella sp. MR-7  Bacteria  normal  normal 
 
 
-
 
NC_009483  Gura_4170  methyl-accepting chemotaxis sensory transducer  39.51 
 
 
578 aa  135  1.9999999999999998e-30  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_008321  Shewmr4_1155  methyl-accepting chemotaxis sensory transducer  34.66 
 
 
523 aa  135  1.9999999999999998e-30  Shewanella sp. MR-4  Bacteria  normal  normal 
 
 
-
 
NC_008577  Shewana3_1156  methyl-accepting chemotaxis sensory transducer  34.66 
 
 
523 aa  135  1.9999999999999998e-30  Shewanella sp. ANA-3  Bacteria  normal  normal 
 
 
-
 
NC_011663  Sbal223_3064  methyl-accepting chemotaxis sensory transducer  36.67 
 
 
522 aa  134  5e-30  Shewanella baltica OS223  Bacteria  normal  hitchhiker  0.0000000699577 
 
 
-
 
NC_009052  Sbal_1246  methyl-accepting chemotaxis sensory transducer  36.67 
 
 
522 aa  134  5e-30  Shewanella baltica OS155  Bacteria  normal  n/a   
 
 
-
 
NC_007958  RPD_3409  chemotaxis sensory transducer  43.5 
 
 
651 aa  134  5e-30  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.304746  normal 
 
 
-
 
NC_009665  Shew185_1290  methyl-accepting chemotaxis sensory transducer  36.67 
 
 
522 aa  134  6e-30  Shewanella baltica OS185  Bacteria  normal  n/a   
 
 
-
 
NC_007492  Pfl01_3326  chemotaxis sensory transducer  35.14 
 
 
534 aa  134  6.999999999999999e-30  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal 
 
 
-
 
NC_009997  Sbal195_1324  methyl-accepting chemotaxis sensory transducer  36 
 
 
522 aa  132  1.0000000000000001e-29  Shewanella baltica OS195  Bacteria  normal  normal  0.0159359 
 
 
-
 
NC_008345  Sfri_1808  methyl-accepting chemotaxis sensory transducer  32.27 
 
 
514 aa  132  2.0000000000000002e-29  Shewanella frigidimarina NCIMB 400  Bacteria  normal  n/a   
 
 
-
 
NC_009438  Sputcn32_2723  methyl-accepting chemotaxis sensory transducer  36 
 
 
522 aa  130  8.000000000000001e-29  Shewanella putrefaciens CN-32  Bacteria  normal  0.471128  n/a   
 
 
-
 
NC_011004  Rpal_4064  methyl-accepting chemotaxis sensory transducer  41.5 
 
 
651 aa  129  1.0000000000000001e-28  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_004578  PSPTO_3480  methyl-accepting chemotaxis protein  32.97 
 
 
533 aa  129  2.0000000000000002e-28  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.0820031  n/a   
 
 
-
 
NC_007778  RPB_1977  methyl-accepting chemotaxis sensory transducer  41 
 
 
651 aa  129  2.0000000000000002e-28  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.064764  normal 
 
 
-
 
NC_007958  RPD_0995  chemotaxis sensory transducer  35.57 
 
 
656 aa  129  2.0000000000000002e-28  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.880627  normal 
 
 
-
 
NC_011004  Rpal_3598  methyl-accepting chemotaxis sensory transducer  35.16 
 
 
672 aa  127  4.0000000000000003e-28  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_011757  Mchl_3907  methyl-accepting chemotaxis sensory transducer  40.56 
 
 
565 aa  127  5e-28  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal 
 
 
-
 
NC_009485  BBta_6635  methyl-accepting chemotaxis protein  36.73 
 
 
565 aa  127  5e-28  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.459746  normal  0.104137 
 
 
-
 
NC_008740  Maqu_2839  methyl-accepting chemotaxis sensory transducer  33.17 
 
 
546 aa  127  6e-28  Marinobacter aquaeolei VT8  Bacteria  normal  n/a   
 
 
-
 
NC_010506  Swoo_3399  methyl-accepting chemotaxis sensory transducer  25.63 
 
 
526 aa  126  1e-27  Shewanella woodyi ATCC 51908  Bacteria  normal  normal 
 
 
-
 
NC_009485  BBta_6483  methyl-accepting chemotaxis protein  36.73 
 
 
565 aa  126  1e-27  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.877741  normal 
 
 
-
 
NC_009485  BBta_2843  putative histidine kinase, HAMP region  41.98 
 
 
682 aa  126  1e-27  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_007778  RPB_4286  methyl-accepting chemotaxis sensory transducer  34.38 
 
 
563 aa  125  1e-27  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal 
 
 
-
 
NC_007925  RPC_1795  methyl-accepting chemotaxis sensory transducer  34.6 
 
 
561 aa  126  1e-27  Rhodopseudomonas palustris BisB18  Bacteria  normal  0.432423  normal  0.0230577 
 
 
-
 
NC_011146  Gbem_0467  methyl-accepting chemotaxis sensory transducer  38.93 
 
 
693 aa  125  2e-27  Geobacter bemidjiensis Bem  Bacteria  normal  0.285916  n/a   
 
 
-
 
NC_008312  Tery_4229  methyl-accepting chemotaxis sensory transducer  45.14 
 
 
1150 aa  125  2e-27  Trichodesmium erythraeum IMS101  Bacteria  normal  normal  0.591053 
 
 
-
 
NC_007964  Nham_0772  methyl-accepting chemotaxis sensory transducer  40.19 
 
 
561 aa  125  2e-27  Nitrobacter hamburgensis X14  Bacteria  normal  n/a   
 
 
-
 
NC_007778  RPB_1317  methyl-accepting chemotaxis sensory transducer  36.4 
 
 
560 aa  125  2e-27  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal  0.14669 
 
 
-
 
NC_010172  Mext_3616  chemotaxis sensory transducer  40.56 
 
 
305 aa  125  3e-27  Methylobacterium extorquens PA1  Bacteria  normal  0.460138  normal 
 
 
-
 
NC_010505  Mrad2831_2471  methyl-accepting chemotaxis sensory transducer  34.96 
 
 
718 aa  125  3e-27  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.0242034  normal 
 
 
-
 
NC_009485  BBta_1840  methyl-accepting chemotaxis sensory transducer  34.8 
 
 
561 aa  124  5e-27  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal  0.745103 
 
 
-
 
NC_009485  BBta_0575  methyl-accepting chemotaxis sensory transducer  34.89 
 
 
681 aa  124  6e-27  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_007643  Rru_A0718  chemotaxis sensory transducer  41.71 
 
 
669 aa  123  7e-27  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.845917  n/a   
 
 
-
 
NC_007925  RPC_4104  methyl-accepting chemotaxis sensory transducer  39.34 
 
 
586 aa  124  7e-27  Rhodopseudomonas palustris BisB18  Bacteria  normal  0.783692  normal 
 
 
-
 
NC_007925  RPC_4527  methyl-accepting chemotaxis sensory transducer  37.91 
 
 
667 aa  123  8e-27  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal  0.527831 
 
 
-
 
NC_009485  BBta_0865  methyl-accepting chemotaxis sensory transducer  38.21 
 
 
712 aa  123  9e-27  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal  0.163995 
 
 
-
 
NC_011004  Rpal_1871  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  34.67 
 
 
716 aa  122  9.999999999999999e-27  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_009485  BBta_0969  methyl-accepting chemotaxis sensory transducer  36.22 
 
 
562 aa  123  9.999999999999999e-27  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.956339  normal  0.570918 
 
 
-
 
NC_011004  Rpal_0233  methyl-accepting chemotaxis sensory transducer  39.74 
 
 
563 aa  123  9.999999999999999e-27  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_011004  Rpal_2757  methyl-accepting chemotaxis sensory transducer  34.8 
 
 
561 aa  123  9.999999999999999e-27  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.0630329  n/a   
 
 
-
 
NC_007925  RPC_4580  methyl-accepting chemotaxis sensory transducer  34.98 
 
 
563 aa  123  9.999999999999999e-27  Rhodopseudomonas palustris BisB18  Bacteria  normal  0.174371  normal 
 
 
-
 
NC_011004  Rpal_5120  methyl-accepting chemotaxis sensory transducer  35.42 
 
 
563 aa  123  9.999999999999999e-27  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_011004  Rpal_4787  methyl-accepting chemotaxis sensory transducer  36.95 
 
 
561 aa  122  1.9999999999999998e-26  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.708956  n/a   
 
 
-
 
NC_007778  RPB_2358  methyl-accepting chemotaxis sensory transducer  35.71 
 
 
673 aa  122  1.9999999999999998e-26  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal  0.207811 
 
 
-
 
NC_007925  RPC_1710  methyl-accepting chemotaxis sensory transducer  33.58 
 
 
449 aa  122  1.9999999999999998e-26  Rhodopseudomonas palustris BisB18  Bacteria  normal  0.140977  normal  0.0321459 
 
 
-
 
NC_007958  RPD_3581  methyl-accepting chemotaxis sensory transducer  36.78 
 
 
567 aa  122  1.9999999999999998e-26  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.0981346  normal  0.985512 
 
 
-
 
NC_007643  Rru_A1160  chemotaxis sensory transducer  36.86 
 
 
559 aa  121  3e-26  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  n/a   
 
 
-
 
NC_008699  Noca_3602  chemotaxis sensory transducer  47.77 
 
 
518 aa  121  3e-26  Nocardioides sp. JS614  Bacteria  normal  n/a   
 
 
-
 
NC_009511  Swit_3980  methyl-accepting chemotaxis sensory transducer  34.32 
 
 
468 aa  121  3e-26  Sphingomonas wittichii RW1  Bacteria  normal  normal  0.330272 
 
 
-
 
NC_007958  RPD_0994  chemotaxis sensory transducer  34.78 
 
 
656 aa  121  3e-26  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.357708  normal 
 
 
-
 
NC_009485  BBta_2905  putative methyl-accepting chemotaxis protein  36.47 
 
 
542 aa  121  3.9999999999999996e-26  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.234112  normal  0.211145 
 
 
-
 
NC_014148  Plim_1909  chemotaxis sensory transducer  36.74 
 
 
965 aa  121  4.9999999999999996e-26  Planctomyces limnophilus DSM 3776  Bacteria  normal  0.11776  n/a   
 
 
-
 
NC_007958  RPD_3904  chemotaxis sensory transducer  35.89 
 
 
566 aa  120  4.9999999999999996e-26  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal 
 
 
-
 
NC_007778  RPB_2653  methyl-accepting chemotaxis sensory transducer  34.59 
 
 
691 aa  120  6e-26  Rhodopseudomonas palustris HaA2  Bacteria  decreased coverage  0.00184965  normal  0.0777916 
 
 
-
 
NC_007958  RPD_3547  chemotaxis sensory transducer  33.22 
 
 
566 aa  120  6e-26  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal 
 
 
-
 
NC_007517  Gmet_2939  methyl-accepting chemotaxis sensory transducer  35.29 
 
 
696 aa  120  7e-26  Geobacter metallireducens GS-15  Bacteria  normal  hitchhiker  0.00000015868 
 
 
-
 
NC_011757  Mchl_0679  methyl-accepting chemotaxis sensory transducer  50.31 
 
 
565 aa  120  7e-26  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal  0.0248904 
 
 
-
 
NC_008009  Acid345_1672  methyl-accepting chemotaxis sensory transducer  39.52 
 
 
904 aa  120  7.999999999999999e-26  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  normal  0.707022 
 
 
-
 
NC_009485  BBta_0644  putative methyl-accepting chemotaxis receptor/sensory transducer  39.81 
 
 
565 aa  120  7.999999999999999e-26  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_007925  RPC_3161  methyl-accepting chemotaxis sensory transducer  34.92 
 
 
731 aa  120  9e-26  Rhodopseudomonas palustris BisB18  Bacteria  normal  0.072786  normal 
 
 
-
 
NC_007925  RPC_3475  methyl-accepting chemotaxis sensory transducer  37.2 
 
 
649 aa  120  9e-26  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal 
 
 
-
 
NC_010172  Mext_0667  chemotaxis sensory transducer  50.31 
 
 
565 aa  120  9e-26  Methylobacterium extorquens PA1  Bacteria  normal  0.510632  normal  0.195802 
 
 
-
 
NC_009485  BBta_2368  putative methyl-accepting chemotaxis receptor/sensory transducer precursor  34.32 
 
 
561 aa  120  9e-26  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal  0.280114 
 
 
-
 
NC_007643  Rru_A0632  chemotaxis sensory transducer  36.07 
 
 
736 aa  119  9.999999999999999e-26  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.180969  n/a   
 
 
-
 
NC_007778  RPB_4561  methyl-accepting chemotaxis sensory transducer  38.21 
 
 
711 aa  119  9.999999999999999e-26  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal 
 
 
-
 
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