| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_3480 |
|---|
| Symbol | |
|---|
| ID | 1185145 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_004578 |
|---|
| Strand | - |
|---|
| Start bp | 3926984 |
|---|
| End bp | 3928585 |
|---|
| Gene Length | 1602 bp |
|---|
| Protein Length | 533 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 637394833 |
|---|
| Product | methyl-accepting chemotaxis protein |
|---|
| Protein accession | NP_793260 |
|---|
| Protein GI | 28870641 |
|---|
| COG category | [N] Cell motility
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG0840] Methyl-accepting chemotaxis protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.0820031 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCCGAGA ACCTATCCAT GGCAGCCGGG CTGCCGCTGG CCGATGCTTC GGGCGCTGCG
TCGAAGTGGT GGGTGCCGGC GGTGCAGAGT GTTGCGTTGT GCCTGCTGCT GGCGGCCATG
AGCGTTGCCG GGCTGTCTCT CTATGTGGTC ACACCGCTGG CGTTGCTGGT GGTCTGGCTG
CCACGTCTGG CGCGCAAAAG TGGCCTGGTT TCGCGCGTCG ATTCCGGTGA CAGCGACATT
GCTTTGCTGA CCCGCGATCT GTCGCGCACC ACCAGTCATA ACGCGCTTTC CGCCGCTCAG
GTGGCGTTTT CCGTGGGGCA GCTCGCGGGC AGGGTGCAGT CGCAACTGGG GGCCGCCGAA
CAGGTGGTCA GCAGCGCCGA GCAGATGATT GCCACAGAGC AGCAGACCGC GCAGTTGAGC
CAGCAGGCGC TGATTGCGGC CAGTGAGGCG CGTCAGCGCA GTGAGTCCGG AAGCAGCGCG
CTGAATGAGT CCATCGAACG CATGCATCGC TTGAGCCAGC GCGCGGTCGG CAGTCGTGAG
CTGATCGAAG CGCTGAGCCA GCGCAGCGAG GAGATCCAGC GAGTGACGAT GGTGATCCAG
TCGATTGCCA GCCAGACCAA CCTGCTGGCG CTCAATGCTG CCATTGAAGC TGCCCGTGCG
GGCGAACATG GACGCGGCTT TGCCGTGGTT GCCGATGAGG TGCGCGGGCT CGCCGGTCGA
ACCGCCAGCG CTACCGGTGA GGTCGGCCAG ATGGTCGCCG ACATTCAGCA ACGCACCGCA
CAGGTTGTCG AGCAGATCCG CGAGTTGTCG TCCGATCTGG ACACCGGCGT CGAACAGGTC
GAGCTGACCG GTCAGCATCT GGGCAATATT GCCCGGCTGG CCGTCGAGGT CGAAAGCCAG
GTCAGCGAAA TCGCTCAGGG GGCACGAAGT AATCAGGATC AGTTGGCGAG CCTGTTCGAG
GCCGTCGAGC ACATGCGCAG TGATCTGGCG GTCAGCGATG AGCAGACCCG CCAACTGGCC
AGGGCTGCCG TGCAGATGGA GGGGCAGGCT GAGACCATCA GCCAGCGCCT GGCTCAGGTG
GGGCTGGATG ATTATCACCA GCGTATCTAC GATCTGGCCC GTGAAGGTGC GCAACGGATT
GCAGAAAAGT TCGAGGCTGA TATCGAGCAG GGGCGGGTCA GCCTGGACGA CTTGTTTGAT
CGTAGCTATA AACCTGTCCC CAATACTTCG CCCACCCGGT TCACGACGCG TTTTGACCGT
TACACCGACC AAACGCTGCC AGGGCTGCAA GAGCCCTTGC TTTCCCGGCA CGAAGGTCTG
GTGTTTGCCA TTGCCTGCAC GCAACAGGGT TACGTACCCA CGCACAACAA TGCGTTCAAC
CAGCCTTTGA CGGGTGATGC TGCGGTGGAC AATGCGCGTA ATCGAAGCAA GCGCAAGTTC
GATGACCGGA CCGGTATTCG CTGCGGCAGC CATCAGTTGC CGGTTTTGCT GCAAACCTAC
ACCCGCGACA CGGGCGAGCT GATGCATGAC CTGTCCGTGC CGATCATGCT GAAAGGGCTA
CACTGGGGTG GTTTGCGCCT GGGCTACAAG CCGCAAGGCT GA
|
|---|
| Protein sequence | MAENLSMAAG LPLADASGAA SKWWVPAVQS VALCLLLAAM SVAGLSLYVV TPLALLVVWL
PRLARKSGLV SRVDSGDSDI ALLTRDLSRT TSHNALSAAQ VAFSVGQLAG RVQSQLGAAE
QVVSSAEQMI ATEQQTAQLS QQALIAASEA RQRSESGSSA LNESIERMHR LSQRAVGSRE
LIEALSQRSE EIQRVTMVIQ SIASQTNLLA LNAAIEAARA GEHGRGFAVV ADEVRGLAGR
TASATGEVGQ MVADIQQRTA QVVEQIRELS SDLDTGVEQV ELTGQHLGNI ARLAVEVESQ
VSEIAQGARS NQDQLASLFE AVEHMRSDLA VSDEQTRQLA RAAVQMEGQA ETISQRLAQV
GLDDYHQRIY DLAREGAQRI AEKFEADIEQ GRVSLDDLFD RSYKPVPNTS PTRFTTRFDR
YTDQTLPGLQ EPLLSRHEGL VFAIACTQQG YVPTHNNAFN QPLTGDAAVD NARNRSKRKF
DDRTGIRCGS HQLPVLLQTY TRDTGELMHD LSVPIMLKGL HWGGLRLGYK PQG
|
|---|
| |