More than 300 homologs were found in PanDaTox collection
for query gene Rpic12D_0496 on replicon NC_012856
Organism: Ralstonia pickettii 12D



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_010682  Rpic_0509  methyl-accepting chemotaxis sensory transducer  98.51 
 
 
470 aa  939    Ralstonia pickettii 12J  Bacteria  normal  0.856427  normal  0.10181 
 
 
-
 
NC_012856  Rpic12D_0496  methyl-accepting chemotaxis sensory transducer  100 
 
 
470 aa  952    Ralstonia pickettii 12D  Bacteria  normal  normal  0.453159 
 
 
-
 
NC_010622  Bphy_1275  methyl-accepting chemotaxis sensory transducer  57.4 
 
 
470 aa  526  1e-148  Burkholderia phymatum STM815  Bacteria  normal  normal  0.233006 
 
 
-
 
NC_007951  Bxe_A1954  methyl-accepting chemotaxis sensory transducer  58.12 
 
 
511 aa  526  1e-148  Burkholderia xenovorans LB400  Bacteria  normal  0.249155  normal  0.44726 
 
 
-
 
NC_010681  Bphyt_2304  methyl-accepting chemotaxis sensory transducer  57.57 
 
 
468 aa  522  1e-147  Burkholderia phytofirmans PsJN  Bacteria  normal  normal  0.816033 
 
 
-
 
NC_008061  Bcen_3236  methyl-accepting chemotaxis sensory transducer  55.91 
 
 
476 aa  505  9.999999999999999e-143  Burkholderia cenocepacia AU 1054  Bacteria  normal  0.315544  n/a   
 
 
-
 
NC_008543  Bcen2424_5132  methyl-accepting chemotaxis sensory transducer  55.77 
 
 
468 aa  506  9.999999999999999e-143  Burkholderia cenocepacia HI2424  Bacteria  normal  0.202601  normal 
 
 
-
 
NC_010515  Bcenmc03_5149  methyl-accepting chemotaxis sensory transducer  55.77 
 
 
468 aa  504  1e-141  Burkholderia cenocepacia MC0-3  Bacteria  normal  0.853292  normal 
 
 
-
 
NC_009485  BBta_6912  methyl-accepting chemotaxis sensory transducer  47.46 
 
 
475 aa  410  1e-113  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.18628  normal  0.2896 
 
 
-
 
NC_007643  Rru_A1554  methyl-accepting chemotaxis sensory transducer  46.12 
 
 
495 aa  392  1e-108  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  n/a   
 
 
-
 
NC_008340  Mlg_1152  methyl-accepting chemotaxis sensory transducer  44.24 
 
 
484 aa  378  1e-103  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  0.26629  normal 
 
 
-
 
NC_012850  Rleg_1014  methyl-accepting chemotaxis sensory transducer  43.44 
 
 
482 aa  367  1e-100  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal 
 
 
-
 
NC_008789  Hhal_0535  methyl-accepting chemotaxis sensory transducer  40.98 
 
 
487 aa  351  1e-95  Halorhodospira halophila SL1  Bacteria  normal  n/a   
 
 
-
 
NC_007802  Jann_2227  methyl-accepting chemotaxis sensory transducer  41.16 
 
 
481 aa  346  6e-94  Jannaschia sp. CCS1  Bacteria  normal  0.237535  normal 
 
 
-
 
NC_010524  Lcho_1623  methyl-accepting chemotaxis sensory transducer  39.48 
 
 
454 aa  305  2.0000000000000002e-81  Leptothrix cholodnii SP-6  Bacteria  n/a    hitchhiker  0.00717627 
 
 
-
 
NC_008825  Mpe_A3082  methyl-accepting chemotaxis sensory transducer  39.82 
 
 
448 aa  304  2.0000000000000002e-81  Methylibium petroleiphilum PM1  Bacteria  normal  0.802467  normal  0.530433 
 
 
-
 
NC_008340  Mlg_1153  methyl-accepting chemotaxis sensory transducer  40.66 
 
 
474 aa  301  2e-80  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  normal 
 
 
-
 
NC_009511  Swit_3980  methyl-accepting chemotaxis sensory transducer  37.11 
 
 
468 aa  276  5e-73  Sphingomonas wittichii RW1  Bacteria  normal  normal  0.330272 
 
 
-
 
NC_011138  MADE_03575  methyl-accepting chemotaxis protein  35.21 
 
 
525 aa  263  3e-69  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  n/a   
 
 
-
 
NC_008740  Maqu_2839  methyl-accepting chemotaxis sensory transducer  34.35 
 
 
546 aa  255  1.0000000000000001e-66  Marinobacter aquaeolei VT8  Bacteria  normal  n/a   
 
 
-
 
NC_003910  CPS_3042  methyl-accepting chemotaxis protein  33.75 
 
 
527 aa  254  3e-66  Colwellia psychrerythraea 34H  Bacteria  normal  n/a   
 
 
-
 
NC_010506  Swoo_3399  methyl-accepting chemotaxis sensory transducer  33.33 
 
 
526 aa  253  5.000000000000001e-66  Shewanella woodyi ATCC 51908  Bacteria  normal  normal 
 
 
-
 
NC_008345  Sfri_1808  methyl-accepting chemotaxis sensory transducer  33.55 
 
 
514 aa  245  9.999999999999999e-64  Shewanella frigidimarina NCIMB 400  Bacteria  normal  n/a   
 
 
-
 
NC_009439  Pmen_4367  methyl-accepting chemotaxis sensory transducer  36.62 
 
 
524 aa  242  9e-63  Pseudomonas mendocina ymp  Bacteria  normal  normal 
 
 
-
 
NC_007005  Psyr_3261  chemotaxis sensory transducer  36.3 
 
 
534 aa  236  4e-61  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal 
 
 
-
 
NC_007492  Pfl01_3326  chemotaxis sensory transducer  35.04 
 
 
534 aa  236  5.0000000000000005e-61  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal 
 
 
-
 
NC_004578  PSPTO_3480  methyl-accepting chemotaxis protein  34.3 
 
 
533 aa  236  6e-61  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.0820031  n/a   
 
 
-
 
NC_009052  Sbal_1246  methyl-accepting chemotaxis sensory transducer  36.34 
 
 
522 aa  233  4.0000000000000004e-60  Shewanella baltica OS155  Bacteria  normal  n/a   
 
 
-
 
NC_011663  Sbal223_3064  methyl-accepting chemotaxis sensory transducer  36.34 
 
 
522 aa  233  4.0000000000000004e-60  Shewanella baltica OS223  Bacteria  normal  hitchhiker  0.0000000699577 
 
 
-
 
NC_009656  PSPA7_4857  methyl-accepting chemotaxis protein  34.55 
 
 
535 aa  233  5e-60  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_008463  PA14_55750  putative chemotaxis transducer  33.78 
 
 
538 aa  233  7.000000000000001e-60  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal 
 
 
-
 
NC_009665  Shew185_1290  methyl-accepting chemotaxis sensory transducer  36.07 
 
 
522 aa  232  1e-59  Shewanella baltica OS185  Bacteria  normal  n/a   
 
 
-
 
NC_009997  Sbal195_1324  methyl-accepting chemotaxis sensory transducer  36.07 
 
 
522 aa  232  1e-59  Shewanella baltica OS195  Bacteria  normal  normal  0.0159359 
 
 
-
 
NC_009438  Sputcn32_2723  methyl-accepting chemotaxis sensory transducer  34.75 
 
 
522 aa  232  1e-59  Shewanella putrefaciens CN-32  Bacteria  normal  0.471128  n/a   
 
 
-
 
NC_009654  Mmwyl1_1460  methyl-accepting chemotaxis sensory transducer  32.76 
 
 
534 aa  229  7e-59  Marinomonas sp. MWYL1  Bacteria  normal  0.695651  normal 
 
 
-
 
NC_003910  CPS_4961  methyl-accepting chemotaxis protein  35.71 
 
 
527 aa  229  8e-59  Colwellia psychrerythraea 34H  Bacteria  normal  n/a   
 
 
-
 
NC_008321  Shewmr4_1155  methyl-accepting chemotaxis sensory transducer  35.54 
 
 
523 aa  226  5.0000000000000005e-58  Shewanella sp. MR-4  Bacteria  normal  normal 
 
 
-
 
NC_008577  Shewana3_1156  methyl-accepting chemotaxis sensory transducer  36.1 
 
 
523 aa  225  2e-57  Shewanella sp. ANA-3  Bacteria  normal  normal 
 
 
-
 
NC_008322  Shewmr7_1226  methyl-accepting chemotaxis sensory transducer  36.1 
 
 
523 aa  224  3e-57  Shewanella sp. MR-7  Bacteria  normal  normal 
 
 
-
 
NC_010814  Glov_0385  methyl-accepting chemotaxis sensory transducer  31.48 
 
 
698 aa  221  3e-56  Geobacter lovleyi SZ  Bacteria  normal  0.0817491  n/a   
 
 
-
 
NC_011146  Gbem_0467  methyl-accepting chemotaxis sensory transducer  33.07 
 
 
693 aa  213  4.9999999999999996e-54  Geobacter bemidjiensis Bem  Bacteria  normal  0.285916  n/a   
 
 
-
 
NC_009483  Gura_4401  methyl-accepting chemotaxis sensory transducer  30.44 
 
 
695 aa  205  2e-51  Geobacter uraniireducens Rf4  Bacteria  normal  0.896591  n/a   
 
 
-
 
NC_012918  GM21_0484  methyl-accepting chemotaxis sensory transducer  32.8 
 
 
693 aa  204  4e-51  Geobacter sp. M21  Bacteria  n/a    hitchhiker  0.0000000000000150879 
 
 
-
 
NC_008789  Hhal_0534  methyl-accepting chemotaxis sensory transducer  33.33 
 
 
439 aa  203  6e-51  Halorhodospira halophila SL1  Bacteria  normal  n/a   
 
 
-
 
NC_010511  M446_6117  methyl-accepting chemotaxis sensory transducer  56.71 
 
 
713 aa  202  9.999999999999999e-51  Methylobacterium sp. 4-46  Bacteria  normal  0.140639  normal 
 
 
-
 
NC_007517  Gmet_2939  methyl-accepting chemotaxis sensory transducer  30.07 
 
 
696 aa  201  1.9999999999999998e-50  Geobacter metallireducens GS-15  Bacteria  normal  hitchhiker  0.00000015868 
 
 
-
 
NC_010814  Glov_0932  methyl-accepting chemotaxis sensory transducer  29.29 
 
 
707 aa  197  2.0000000000000003e-49  Geobacter lovleyi SZ  Bacteria  normal  0.1893  n/a   
 
 
-
 
NC_008048  Sala_1641  methyl-accepting chemotaxis sensory transducer  26.98 
 
 
480 aa  191  2e-47  Sphingopyxis alaskensis RB2256  Bacteria  normal  0.0715397  normal 
 
 
-
 
NC_007958  RPD_4172  methyl-accepting chemotaxis sensory transducer  46.29 
 
 
584 aa  190  5e-47  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal 
 
 
-
 
NC_002939  GSU0582  methyl-accepting chemotaxis protein  28.76 
 
 
696 aa  188  2e-46  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_009485  BBta_6911  methyl-accepting chemotaxis sensory transducer  46.2 
 
 
584 aa  186  1.0000000000000001e-45  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.900499  normal  0.411338 
 
 
-
 
NC_011004  Rpal_1286  methyl-accepting chemotaxis sensory transducer  45.14 
 
 
583 aa  184  2.0000000000000003e-45  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_007778  RPB_4274  methyl-accepting chemotaxis sensory transducer  45.14 
 
 
583 aa  184  4.0000000000000006e-45  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal 
 
 
-
 
NC_007925  RPC_4808  methyl-accepting chemotaxis sensory transducer  31.59 
 
 
584 aa  181  2e-44  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal 
 
 
-
 
NC_011662  Tmz1t_1958  methyl-accepting chemotaxis sensory transducer  32.32 
 
 
598 aa  171  3e-41  Thauera sp. MZ1T  Bacteria  normal  0.57626  n/a   
 
 
-
 
NC_007298  Daro_0561  methyl-accepting chemotaxis sensory transducer  29.3 
 
 
505 aa  167  2.9999999999999998e-40  Dechloromonas aromatica RCB  Bacteria  normal  normal 
 
 
-
 
NC_009483  Gura_4170  methyl-accepting chemotaxis sensory transducer  44.51 
 
 
578 aa  166  9e-40  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_007498  Pcar_1985  methyl-accepting chemotaxis protein (MCP)  32.2 
 
 
715 aa  164  3e-39  Pelobacter carbinolicus DSM 2380  Bacteria  normal  n/a   
 
 
-
 
NC_004578  PSPTO_2475  methyl-accepting chemotaxis protein  31.23 
 
 
598 aa  159  7e-38  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.0390427  n/a   
 
 
-
 
NC_013173  Dbac_0041  methyl-accepting chemotaxis sensory transducer  30.55 
 
 
573 aa  158  2e-37  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  n/a   
 
 
-
 
NC_007005  Psyr_2241  histidine kinase, HAMP region: chemotaxis sensory transducer  31.25 
 
 
598 aa  155  1e-36  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.130389  normal  0.394001 
 
 
-
 
NC_012918  GM21_1837  methyl-accepting chemotaxis sensory transducer  40.74 
 
 
578 aa  151  3e-35  Geobacter sp. M21  Bacteria  n/a    hitchhiker  0.00718884 
 
 
-
 
NC_011146  Gbem_2381  methyl-accepting chemotaxis sensory transducer  40.74 
 
 
578 aa  148  2.0000000000000003e-34  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_007298  Daro_3097  methyl-accepting chemotaxis sensory transducer  26.95 
 
 
602 aa  145  2e-33  Dechloromonas aromatica RCB  Bacteria  normal  normal 
 
 
-
 
NC_011894  Mnod_6711  methyl-accepting chemotaxis sensory transducer  45.71 
 
 
568 aa  137  4e-31  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_013501  Rmar_0071  methyl-accepting chemotaxis sensory transducer  26.44 
 
 
525 aa  137  4e-31  Rhodothermus marinus DSM 4252  Bacteria  normal  0.603344  n/a   
 
 
-
 
NC_007953  Bxe_C0009  methyl-accepting chemotaxis sensory transducer  28.93 
 
 
511 aa  135  1.9999999999999998e-30  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_010511  M446_6192  methyl-accepting chemotaxis sensory transducer  40.57 
 
 
573 aa  132  1.0000000000000001e-29  Methylobacterium sp. 4-46  Bacteria  normal  0.361355  normal 
 
 
-
 
NC_010320  Teth514_0410  methyl-accepting chemotaxis sensory transducer  30.62 
 
 
548 aa  105  2e-21  Thermoanaerobacter sp. X514  Bacteria  normal  n/a   
 
 
-
 
NC_011884  Cyan7425_1064  methyl-accepting chemotaxis sensory transducer with GAF sensor  30.57 
 
 
879 aa  101  3e-20  Cyanothece sp. PCC 7425  Bacteria  normal  0.698769  hitchhiker  0.00000570114 
 
 
-
 
NC_007005  Psyr_0143  chemotaxis sensory transducer  33.6 
 
 
506 aa  99.4  1e-19  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal 
 
 
-
 
NC_011729  PCC7424_2793  methyl-accepting chemotaxis sensory transducer  30.3 
 
 
778 aa  99  2e-19  Cyanothece sp. PCC 7424  Bacteria  n/a    normal 
 
 
-
 
NC_009051  Memar_1543  methyl-accepting chemotaxis sensory transducer  30.18 
 
 
947 aa  97.1  6e-19  Methanoculleus marisnigri JR1  Archaea  normal  0.393804  n/a   
 
 
-
 
NC_004578  PSPTO_0263  methyl-accepting chemotaxis protein  33.6 
 
 
498 aa  97.1  7e-19  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_009439  Pmen_1800  methyl-accepting chemotaxis sensory transducer  30.1 
 
 
521 aa  95.9  1e-18  Pseudomonas mendocina ymp  Bacteria  normal  0.258308  normal  0.504821 
 
 
-
 
NC_007604  Synpcc7942_0858  methyl-accepting chemotaxis sensory transducer with phytochrome sensor  27.68 
 
 
1406 aa  95.1  3e-18  Synechococcus elongatus PCC 7942  Bacteria  normal  0.0185965  normal  0.079214 
 
 
-
 
NC_007005  Psyr_3735  PAS  30.56 
 
 
521 aa  94.4  4e-18  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal  0.065462 
 
 
-
 
NC_007413  Ava_0061  chemotaxis sensory transducer  31.46 
 
 
752 aa  94  5e-18  Anabaena variabilis ATCC 29413  Bacteria  normal  0.691552  normal  0.30416 
 
 
-
 
NC_008789  Hhal_0443  methyl-accepting chemotaxis sensory transducer  30.22 
 
 
541 aa  94  5e-18  Halorhodospira halophila SL1  Bacteria  normal  n/a   
 
 
-
 
NC_011832  Mpal_1769  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  36.31 
 
 
1343 aa  94  5e-18  Methanosphaerula palustris E1-9c  Archaea  normal  0.221131  normal 
 
 
-
 
NC_004578  PSPTO_1648  aerotaxis receptor  30.23 
 
 
521 aa  92.4  1e-17  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_009783  VIBHAR_02418  hypothetical protein  31 
 
 
578 aa  91.7  3e-17  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_011312  VSAL_I1636  methyl-accepting chemotaxis protein  38.93 
 
 
547 aa  91.3  3e-17  Aliivibrio salmonicida LFI1238  Bacteria  normal  n/a   
 
 
-
 
NC_007005  Psyr_1776  histidine kinase, HAMP region: chemotaxis sensory transducer  35.45 
 
 
543 aa  90.9  4e-17  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal  0.363817 
 
 
-
 
NC_008700  Sama_2502  putative methyl-accepting chemotaxis sensory transducer  33.33 
 
 
649 aa  90.9  5e-17  Shewanella amazonensis SB2B  Bacteria  normal  0.988754  normal 
 
 
-
 
NC_009483  Gura_0476  methyl-accepting chemotaxis sensory transducer  28.36 
 
 
830 aa  90.9  5e-17  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_009052  Sbal_0938  methyl-accepting chemotaxis sensory transducer  34.62 
 
 
548 aa  90.1  7e-17  Shewanella baltica OS155  Bacteria  normal  n/a   
 
 
-
 
NC_009997  Sbal195_3549  methyl-accepting chemotaxis sensory transducer  34.62 
 
 
548 aa  90.1  7e-17  Shewanella baltica OS195  Bacteria  normal  normal 
 
 
-
 
NC_011663  Sbal223_3352  methyl-accepting chemotaxis sensory transducer  34.62 
 
 
573 aa  90.5  7e-17  Shewanella baltica OS223  Bacteria  normal  0.729863  normal 
 
 
-
 
NC_009665  Shew185_3424  methyl-accepting chemotaxis sensory transducer  34.62 
 
 
548 aa  90.1  8e-17  Shewanella baltica OS185  Bacteria  normal  n/a   
 
 
-
 
NC_007575  Suden_0043  methyl-accepting chemotaxis sensory transducer  40 
 
 
421 aa  90.1  8e-17  Sulfurimonas denitrificans DSM 1251  Bacteria  normal  n/a   
 
 
-
 
NC_004578  PSPTO_3699  methyl-accepting chemotaxis protein  34.92 
 
 
543 aa  89.4  1e-16  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_009439  Pmen_2650  methyl-accepting chemotaxis sensory transducer  31.74 
 
 
568 aa  89.4  1e-16  Pseudomonas mendocina ymp  Bacteria  normal  normal 
 
 
-
 
NC_004578  PSPTO_3379  methyl-accepting chemotaxis protein  31.2 
 
 
559 aa  89  2e-16  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_009438  Sputcn32_2347  methyl-accepting chemotaxis sensory transducer  36.97 
 
 
533 aa  89  2e-16  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_007778  RPB_0914  methyl-accepting chemotaxis sensory transducer  31.94 
 
 
689 aa  88.6  2e-16  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal  0.497103 
 
 
-
 
NC_008789  Hhal_1714  methyl-accepting chemotaxis sensory transducer  31.7 
 
 
673 aa  89  2e-16  Halorhodospira halophila SL1  Bacteria  normal  0.712235  n/a   
 
 
-
 
NC_010322  PputGB1_3184  methyl-accepting chemotaxis sensory transducer  29.21 
 
 
541 aa  88.6  2e-16  Pseudomonas putida GB-1  Bacteria  normal  0.799555  normal 
 
 
-
 
NC_007963  Csal_0906  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  36.67 
 
 
440 aa  88.6  2e-16  Chromohalobacter salexigens DSM 3043  Bacteria  normal  n/a   
 
 
-
 
NC_011901  Tgr7_1963  putative methyl-accepting chemotaxis sensory transducer  34.1 
 
 
637 aa  87.8  3e-16  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  0.870205  n/a   
 
 
-
 
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