More than 300 homologs were found in PanDaTox collection
for query gene Swit_3980 on replicon NC_009511
Organism: Sphingomonas wittichii RW1



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009511  Swit_3980  methyl-accepting chemotaxis sensory transducer  100 
 
 
468 aa  935    Sphingomonas wittichii RW1  Bacteria  normal  normal  0.330272 
 
 
-
 
NC_008048  Sala_1641  methyl-accepting chemotaxis sensory transducer  37.77 
 
 
480 aa  301  1e-80  Sphingopyxis alaskensis RB2256  Bacteria  normal  0.0715397  normal 
 
 
-
 
NC_008543  Bcen2424_5132  methyl-accepting chemotaxis sensory transducer  35.62 
 
 
468 aa  296  4e-79  Burkholderia cenocepacia HI2424  Bacteria  normal  0.202601  normal 
 
 
-
 
NC_008061  Bcen_3236  methyl-accepting chemotaxis sensory transducer  35.79 
 
 
476 aa  295  8e-79  Burkholderia cenocepacia AU 1054  Bacteria  normal  0.315544  n/a   
 
 
-
 
NC_010515  Bcenmc03_5149  methyl-accepting chemotaxis sensory transducer  35.62 
 
 
468 aa  295  2e-78  Burkholderia cenocepacia MC0-3  Bacteria  normal  0.853292  normal 
 
 
-
 
NC_012856  Rpic12D_0496  methyl-accepting chemotaxis sensory transducer  37.11 
 
 
470 aa  287  2.9999999999999996e-76  Ralstonia pickettii 12D  Bacteria  normal  normal  0.453159 
 
 
-
 
NC_009485  BBta_6912  methyl-accepting chemotaxis sensory transducer  36.82 
 
 
475 aa  285  9e-76  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.18628  normal  0.2896 
 
 
-
 
NC_007951  Bxe_A1954  methyl-accepting chemotaxis sensory transducer  35.76 
 
 
511 aa  284  2.0000000000000002e-75  Burkholderia xenovorans LB400  Bacteria  normal  0.249155  normal  0.44726 
 
 
-
 
NC_010682  Rpic_0509  methyl-accepting chemotaxis sensory transducer  36.67 
 
 
470 aa  278  1e-73  Ralstonia pickettii 12J  Bacteria  normal  0.856427  normal  0.10181 
 
 
-
 
NC_010622  Bphy_1275  methyl-accepting chemotaxis sensory transducer  36.59 
 
 
470 aa  278  1e-73  Burkholderia phymatum STM815  Bacteria  normal  normal  0.233006 
 
 
-
 
NC_010681  Bphyt_2304  methyl-accepting chemotaxis sensory transducer  36.62 
 
 
468 aa  273  4.0000000000000004e-72  Burkholderia phytofirmans PsJN  Bacteria  normal  normal  0.816033 
 
 
-
 
NC_008340  Mlg_1152  methyl-accepting chemotaxis sensory transducer  34.27 
 
 
484 aa  260  3e-68  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  0.26629  normal 
 
 
-
 
NC_008789  Hhal_0535  methyl-accepting chemotaxis sensory transducer  33.4 
 
 
487 aa  259  7e-68  Halorhodospira halophila SL1  Bacteria  normal  n/a   
 
 
-
 
NC_007643  Rru_A1554  methyl-accepting chemotaxis sensory transducer  31.75 
 
 
495 aa  238  2e-61  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  n/a   
 
 
-
 
NC_012850  Rleg_1014  methyl-accepting chemotaxis sensory transducer  32.91 
 
 
482 aa  235  1.0000000000000001e-60  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal 
 
 
-
 
NC_008825  Mpe_A3082  methyl-accepting chemotaxis sensory transducer  32.22 
 
 
448 aa  196  8.000000000000001e-49  Methylibium petroleiphilum PM1  Bacteria  normal  0.802467  normal  0.530433 
 
 
-
 
NC_007802  Jann_2227  methyl-accepting chemotaxis sensory transducer  30.82 
 
 
481 aa  191  2e-47  Jannaschia sp. CCS1  Bacteria  normal  0.237535  normal 
 
 
-
 
NC_008340  Mlg_1153  methyl-accepting chemotaxis sensory transducer  31.3 
 
 
474 aa  185  2.0000000000000003e-45  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  normal 
 
 
-
 
NC_010524  Lcho_1623  methyl-accepting chemotaxis sensory transducer  30.22 
 
 
454 aa  182  1e-44  Leptothrix cholodnii SP-6  Bacteria  n/a    hitchhiker  0.00717627 
 
 
-
 
NC_007005  Psyr_3261  chemotaxis sensory transducer  29.91 
 
 
534 aa  156  8e-37  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal 
 
 
-
 
NC_004578  PSPTO_3480  methyl-accepting chemotaxis protein  28.57 
 
 
533 aa  148  2.0000000000000003e-34  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.0820031  n/a   
 
 
-
 
NC_008740  Maqu_2839  methyl-accepting chemotaxis sensory transducer  28.03 
 
 
546 aa  145  2e-33  Marinobacter aquaeolei VT8  Bacteria  normal  n/a   
 
 
-
 
NC_009439  Pmen_4367  methyl-accepting chemotaxis sensory transducer  27.48 
 
 
524 aa  145  2e-33  Pseudomonas mendocina ymp  Bacteria  normal  normal 
 
 
-
 
NC_003910  CPS_3042  methyl-accepting chemotaxis protein  25.53 
 
 
527 aa  144  5e-33  Colwellia psychrerythraea 34H  Bacteria  normal  n/a   
 
 
-
 
NC_009483  Gura_4401  methyl-accepting chemotaxis sensory transducer  27.11 
 
 
695 aa  143  7e-33  Geobacter uraniireducens Rf4  Bacteria  normal  0.896591  n/a   
 
 
-
 
NC_009656  PSPA7_4857  methyl-accepting chemotaxis protein  26.3 
 
 
535 aa  143  7e-33  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_010814  Glov_0932  methyl-accepting chemotaxis sensory transducer  28 
 
 
707 aa  142  9e-33  Geobacter lovleyi SZ  Bacteria  normal  0.1893  n/a   
 
 
-
 
NC_011146  Gbem_0467  methyl-accepting chemotaxis sensory transducer  26.04 
 
 
693 aa  141  1.9999999999999998e-32  Geobacter bemidjiensis Bem  Bacteria  normal  0.285916  n/a   
 
 
-
 
NC_008463  PA14_55750  putative chemotaxis transducer  25.87 
 
 
538 aa  142  1.9999999999999998e-32  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal 
 
 
-
 
NC_007498  Pcar_1985  methyl-accepting chemotaxis protein (MCP)  28.4 
 
 
715 aa  141  3e-32  Pelobacter carbinolicus DSM 2380  Bacteria  normal  n/a   
 
 
-
 
NC_009438  Sputcn32_2723  methyl-accepting chemotaxis sensory transducer  27.14 
 
 
522 aa  140  6e-32  Shewanella putrefaciens CN-32  Bacteria  normal  0.471128  n/a   
 
 
-
 
NC_007517  Gmet_2939  methyl-accepting chemotaxis sensory transducer  27.52 
 
 
696 aa  138  2e-31  Geobacter metallireducens GS-15  Bacteria  normal  hitchhiker  0.00000015868 
 
 
-
 
NC_012918  GM21_0484  methyl-accepting chemotaxis sensory transducer  28.46 
 
 
693 aa  137  3.0000000000000003e-31  Geobacter sp. M21  Bacteria  n/a    hitchhiker  0.0000000000000150879 
 
 
-
 
NC_007492  Pfl01_3326  chemotaxis sensory transducer  27.2 
 
 
534 aa  137  5e-31  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal 
 
 
-
 
NC_010814  Glov_0385  methyl-accepting chemotaxis sensory transducer  25.93 
 
 
698 aa  136  7.000000000000001e-31  Geobacter lovleyi SZ  Bacteria  normal  0.0817491  n/a   
 
 
-
 
NC_003910  CPS_4961  methyl-accepting chemotaxis protein  26.02 
 
 
527 aa  133  5e-30  Colwellia psychrerythraea 34H  Bacteria  normal  n/a   
 
 
-
 
NC_008789  Hhal_0534  methyl-accepting chemotaxis sensory transducer  30.44 
 
 
439 aa  133  6e-30  Halorhodospira halophila SL1  Bacteria  normal  n/a   
 
 
-
 
NC_008321  Shewmr4_1155  methyl-accepting chemotaxis sensory transducer  25.67 
 
 
523 aa  133  6e-30  Shewanella sp. MR-4  Bacteria  normal  normal 
 
 
-
 
NC_009052  Sbal_1246  methyl-accepting chemotaxis sensory transducer  25.82 
 
 
522 aa  132  1.0000000000000001e-29  Shewanella baltica OS155  Bacteria  normal  n/a   
 
 
-
 
NC_011663  Sbal223_3064  methyl-accepting chemotaxis sensory transducer  25.82 
 
 
522 aa  132  2.0000000000000002e-29  Shewanella baltica OS223  Bacteria  normal  hitchhiker  0.0000000699577 
 
 
-
 
NC_009665  Shew185_1290  methyl-accepting chemotaxis sensory transducer  25.82 
 
 
522 aa  131  3e-29  Shewanella baltica OS185  Bacteria  normal  n/a   
 
 
-
 
NC_009997  Sbal195_1324  methyl-accepting chemotaxis sensory transducer  25.14 
 
 
522 aa  131  3e-29  Shewanella baltica OS195  Bacteria  normal  normal  0.0159359 
 
 
-
 
NC_008577  Shewana3_1156  methyl-accepting chemotaxis sensory transducer  26.11 
 
 
523 aa  130  4.0000000000000003e-29  Shewanella sp. ANA-3  Bacteria  normal  normal 
 
 
-
 
NC_010506  Swoo_3399  methyl-accepting chemotaxis sensory transducer  24.14 
 
 
526 aa  130  7.000000000000001e-29  Shewanella woodyi ATCC 51908  Bacteria  normal  normal 
 
 
-
 
NC_008345  Sfri_1808  methyl-accepting chemotaxis sensory transducer  24.95 
 
 
514 aa  129  8.000000000000001e-29  Shewanella frigidimarina NCIMB 400  Bacteria  normal  n/a   
 
 
-
 
NC_008322  Shewmr7_1226  methyl-accepting chemotaxis sensory transducer  25.86 
 
 
523 aa  129  1.0000000000000001e-28  Shewanella sp. MR-7  Bacteria  normal  normal 
 
 
-
 
NC_011138  MADE_03575  methyl-accepting chemotaxis protein  27.68 
 
 
525 aa  129  2.0000000000000002e-28  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  n/a   
 
 
-
 
NC_007298  Daro_0561  methyl-accepting chemotaxis sensory transducer  26.58 
 
 
505 aa  125  1e-27  Dechloromonas aromatica RCB  Bacteria  normal  normal 
 
 
-
 
NC_009654  Mmwyl1_1460  methyl-accepting chemotaxis sensory transducer  29.37 
 
 
534 aa  125  2e-27  Marinomonas sp. MWYL1  Bacteria  normal  0.695651  normal 
 
 
-
 
NC_010511  M446_6117  methyl-accepting chemotaxis sensory transducer  42.76 
 
 
713 aa  124  3e-27  Methylobacterium sp. 4-46  Bacteria  normal  0.140639  normal 
 
 
-
 
NC_013173  Dbac_0041  methyl-accepting chemotaxis sensory transducer  26.27 
 
 
573 aa  124  4e-27  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  n/a   
 
 
-
 
NC_004578  PSPTO_2475  methyl-accepting chemotaxis protein  25.42 
 
 
598 aa  124  5e-27  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.0390427  n/a   
 
 
-
 
NC_002939  GSU0582  methyl-accepting chemotaxis protein  26.45 
 
 
696 aa  122  9.999999999999999e-27  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_011662  Tmz1t_1958  methyl-accepting chemotaxis sensory transducer  27.91 
 
 
598 aa  122  9.999999999999999e-27  Thauera sp. MZ1T  Bacteria  normal  0.57626  n/a   
 
 
-
 
NC_013501  Rmar_0071  methyl-accepting chemotaxis sensory transducer  26.46 
 
 
525 aa  122  1.9999999999999998e-26  Rhodothermus marinus DSM 4252  Bacteria  normal  0.603344  n/a   
 
 
-
 
NC_007958  RPD_4172  methyl-accepting chemotaxis sensory transducer  34.91 
 
 
584 aa  122  1.9999999999999998e-26  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal 
 
 
-
 
NC_007778  RPB_4274  methyl-accepting chemotaxis sensory transducer  34.32 
 
 
583 aa  120  3.9999999999999996e-26  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal 
 
 
-
 
NC_007953  Bxe_C0009  methyl-accepting chemotaxis sensory transducer  25.62 
 
 
511 aa  119  1.9999999999999998e-25  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_011004  Rpal_1286  methyl-accepting chemotaxis sensory transducer  32.54 
 
 
583 aa  117  3.9999999999999997e-25  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_009485  BBta_6911  methyl-accepting chemotaxis sensory transducer  32.53 
 
 
584 aa  117  6e-25  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.900499  normal  0.411338 
 
 
-
 
NC_007925  RPC_4808  methyl-accepting chemotaxis sensory transducer  33.14 
 
 
584 aa  114  4.0000000000000004e-24  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal 
 
 
-
 
NC_007005  Psyr_2241  histidine kinase, HAMP region: chemotaxis sensory transducer  25.22 
 
 
598 aa  111  3e-23  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.130389  normal  0.394001 
 
 
-
 
NC_007298  Daro_3097  methyl-accepting chemotaxis sensory transducer  26.87 
 
 
602 aa  110  7.000000000000001e-23  Dechloromonas aromatica RCB  Bacteria  normal  normal 
 
 
-
 
NC_004578  PSPTO_3379  methyl-accepting chemotaxis protein  35.29 
 
 
559 aa  103  4e-21  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_008463  PA14_29800  putative chemotaxis transducer  38.74 
 
 
561 aa  103  9e-21  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  decreased coverage  0.00431462  normal 
 
 
-
 
NC_009656  PSPA7_2548  putative chemotaxis transducer  38.32 
 
 
561 aa  102  1e-20  Pseudomonas aeruginosa PA7  Bacteria  normal  0.271227  n/a   
 
 
-
 
NC_009439  Pmen_2000  methyl-accepting chemotaxis sensory transducer  37.14 
 
 
560 aa  102  1e-20  Pseudomonas mendocina ymp  Bacteria  normal  0.0144557  normal  0.0324669 
 
 
-
 
NC_011901  Tgr7_2492  methyl-accepting chemotaxis sensory transducer  34.65 
 
 
572 aa  101  3e-20  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_008789  Hhal_0443  methyl-accepting chemotaxis sensory transducer  32.53 
 
 
541 aa  100  6e-20  Halorhodospira halophila SL1  Bacteria  normal  n/a   
 
 
-
 
NC_009438  Sputcn32_3200  methyl-accepting chemotaxis sensory transducer  29.5 
 
 
554 aa  100  7e-20  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_009438  Sputcn32_3052  methyl-accepting chemotaxis sensory transducer  29.5 
 
 
554 aa  98.6  2e-19  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_011146  Gbem_2381  methyl-accepting chemotaxis sensory transducer  31.82 
 
 
578 aa  98.6  2e-19  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_009784  VIBHAR_07022  histidine kinase  34.08 
 
 
553 aa  99  2e-19  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_009457  VC0395_A1249  methyl-accepting chemotaxis protein  36.46 
 
 
596 aa  98.6  2e-19  Vibrio cholerae O395  Bacteria  hitchhiker  0.000483868  n/a   
 
 
-
 
NC_008322  Shewmr7_0630  methyl-accepting chemotaxis sensory transducer  29.14 
 
 
554 aa  97.4  4e-19  Shewanella sp. MR-7  Bacteria  normal  normal 
 
 
-
 
NC_008577  Shewana3_3491  methyl-accepting chemotaxis sensory transducer  29.14 
 
 
554 aa  97.4  4e-19  Shewanella sp. ANA-3  Bacteria  normal  normal 
 
 
-
 
NC_008321  Shewmr4_3323  methyl-accepting chemotaxis sensory transducer  29.14 
 
 
554 aa  97.4  5e-19  Shewanella sp. MR-4  Bacteria  normal  normal 
 
 
-
 
NC_007796  Mhun_2032  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  28.09 
 
 
1285 aa  96.7  8e-19  Methanospirillum hungatei JF-1  Archaea  normal  normal  0.295891 
 
 
-
 
NC_009485  BBta_5250  hypothetical protein  34.13 
 
 
466 aa  96.7  8e-19  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.869882  normal  0.134387 
 
 
-
 
NC_012918  GM21_1837  methyl-accepting chemotaxis sensory transducer  31.82 
 
 
578 aa  96.7  9e-19  Geobacter sp. M21  Bacteria  n/a    hitchhiker  0.00718884 
 
 
-
 
NC_008740  Maqu_2346  methyl-accepting chemotaxis sensory transducer  44.68 
 
 
564 aa  95.9  1e-18  Marinobacter aquaeolei VT8  Bacteria  normal  n/a   
 
 
-
 
NC_009975  MmarC6_1726  methyl-accepting chemotaxis sensory transducer  33.47 
 
 
467 aa  95.9  1e-18  Methanococcus maripaludis C6  Archaea  normal  n/a   
 
 
-
 
NC_009637  MmarC7_0176  methyl-accepting chemotaxis sensory transducer  33.2 
 
 
467 aa  95.1  2e-18  Methanococcus maripaludis C7  Archaea  normal  normal 
 
 
-
 
NC_008345  Sfri_0861  methyl-accepting chemotaxis sensory transducer  28.34 
 
 
542 aa  95.5  2e-18  Shewanella frigidimarina NCIMB 400  Bacteria  normal  n/a   
 
 
-
 
NC_009784  VIBHAR_05936  hypothetical protein  38.31 
 
 
480 aa  94.7  3e-18  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_011769  DvMF_0948  methyl-accepting chemotaxis sensory transducer  34.35 
 
 
587 aa  94.7  3e-18  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal  0.352371 
 
 
-
 
NC_011884  Cyan7425_1064  methyl-accepting chemotaxis sensory transducer with GAF sensor  29.39 
 
 
879 aa  94.7  3e-18  Cyanothece sp. PCC 7425  Bacteria  normal  0.698769  hitchhiker  0.00000570114 
 
 
-
 
NC_008577  Shewana3_3299  methyl-accepting chemotaxis sensory transducer  29.08 
 
 
554 aa  94.7  3e-18  Shewanella sp. ANA-3  Bacteria  normal  normal 
 
 
-
 
NC_004347  SO_0987  methyl-accepting chemotaxis protein  29.08 
 
 
554 aa  94.4  4e-18  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_009457  VC0395_A1017  methyl-accepting chemotaxis protein  33.33 
 
 
438 aa  94.4  4e-18  Vibrio cholerae O395  Bacteria  normal  n/a   
 
 
-
 
NC_009831  Ssed_3759  methyl-accepting chemotaxis sensory transducer  28.06 
 
 
554 aa  94.4  4e-18  Shewanella sediminis HAW-EB3  Bacteria  normal  0.0990388  normal 
 
 
-
 
NC_009654  Mmwyl1_1586  methyl-accepting chemotaxis sensory transducer  36.61 
 
 
626 aa  94.4  4e-18  Marinomonas sp. MWYL1  Bacteria  normal  normal 
 
 
-
 
NC_010511  M446_6192  methyl-accepting chemotaxis sensory transducer  33.53 
 
 
573 aa  94.4  4e-18  Methylobacterium sp. 4-46  Bacteria  normal  0.361355  normal 
 
 
-
 
NC_009457  VC0395_A1023  methyl-accepting chemotaxis protein  30.67 
 
 
578 aa  94.4  4e-18  Vibrio cholerae O395  Bacteria  normal  n/a   
 
 
-
 
NC_009486  Tpet_1766  methyl-accepting chemotaxis sensory transducer  39.85 
 
 
605 aa  94  5e-18  Thermotoga petrophila RKU-1  Bacteria  normal  0.053685  n/a   
 
 
-
 
NC_008322  Shewmr7_3199  methyl-accepting chemotaxis sensory transducer  29.08 
 
 
554 aa  94.4  5e-18  Shewanella sp. MR-7  Bacteria  normal  normal  0.927661 
 
 
-
 
NC_009997  Sbal195_3789  methyl-accepting chemotaxis sensory transducer  32.4 
 
 
554 aa  94.4  5e-18  Shewanella baltica OS195  Bacteria  normal  normal 
 
 
-
 
NC_009052  Sbal_0641  methyl-accepting chemotaxis sensory transducer  32.4 
 
 
568 aa  93.6  6e-18  Shewanella baltica OS155  Bacteria  normal  n/a   
 
 
-
 
NC_011663  Sbal223_3601  methyl-accepting chemotaxis sensory transducer with Cache sensor  32.4 
 
 
554 aa  93.6  6e-18  Shewanella baltica OS223  Bacteria  normal  normal 
 
 
-
 
NC_010483  TRQ2_0564  methyl-accepting chemotaxis sensory transducer with Cache sensor  33.66 
 
 
660 aa  94  6e-18  Thermotoga sp. RQ2  Bacteria  decreased coverage  0.0020921  n/a   
 
 
-
 
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