| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VC0395_A1017 |
|---|
| Symbol | |
|---|
| ID | 5137257 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Vibrio cholerae O395 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009457 |
|---|
| Strand | + |
|---|
| Start bp | 1056637 |
|---|
| End bp | 1057953 |
|---|
| Gene Length | 1317 bp |
|---|
| Protein Length | 438 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 640532475 |
|---|
| Product | methyl-accepting chemotaxis protein |
|---|
| Protein accession | YP_001216963 |
|---|
| Protein GI | 147675551 |
|---|
| COG category | [N] Cell motility
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG0840] Methyl-accepting chemotaxis protein |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 44 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | TTGATTTGGA AGCCATTTAT GCCATTTTGG AAAAAAGCTG CCGCCCAATC AGAGGTGGAA
CAACACAATC ATGACAGCGA CATTGTCTCT GCACTTAAAA GGAACCTTGC GTATATCGAG
TTTGATCCGC AAGGCAAAAT TTTAGATGCA AACGCACTTT TTTTGAGCGC AATGGGGTAC
ACCAAAGAAG AAGTGATTGG TCAACATCAC AAAATTTTTT GTGATCCCGA GACTGTTAAC
TCCTTGGAAT ATGCACAATT TTGGAAAAGC CTAGCCCAAG GACAAGCGCA ACGAAAAATG
TTTCACCGAC TCAAGAAAGA TGGTTCGAGT ATCTGGATAG AGGCAACGTA TATGCCAGTA
CGTAATCGTG CGGGCGATGT ATATAAGGTG ACTAAAGTTG CCCATGATGT GACGAAATCC
AAAATTACGG CGGACAAGCA GGCTGCGGTA TTTCATGCTC TGGATCGTTC ATCAGCCATG
ATTCAGTTTA ATCCGGATGG AACCATCAAA GAGGCGAATG AGAACTTTCT CAAAGCCACG
GGTTATCGAC TGGAAGAGAT TGTTGGCAAA CATCACCGTA TGTTTTGTGA TGACCGTTTC
TATAAAGAAA ATCCAAACTT TTGGCGTGAG CTCGCAAGAG GGGAGTTTAA ATCCGGTTTA
TTCCATCGGC GCACTCGCCA CGGTCAAGAT CTTTGGTTAG AGGCGACGTA TAACCCGATT
TTTAATGATG CAGGTGTCGT GACTCAAGTT GTTAAATTTG CTTCAGATGT TACAGATCAA
GTGTTAAAAG CTCATGCAAC CAAAGAAGCG TCGCAAATGG CTCAGCAAAC GTCTGCAGAA
ACGGTTCGTG TGGCAGAGTC GGGGCGCGAG ATGATTGATG CTGCGGCAAC GATAGCGAGT
GGTATTACAG AGTCAATTGC GGGTGCAAAT GCATTGATGA CGGACCTCTC ATCTCAATCT
CAGAGAATCA CGCAAATAGT CACAACCATC AACAAAATTG CTGAGCAGAC CAATTTGTTA
GCTTTAAATG CCGCCATTGA GGCCGCTCGA GCAGGTGAAT ATGGACGTGG TTTTGCTGTA
GTGGCTGATG AGGTGCGCAG TTTAGCGTCG AATACCAGTC AAGCAACTAG CGAAATTGAC
AACATTGTTA AACGCAACAG CCAACTCACC GAACAGTCAG GGCAAACCAT GGAGCAGATC
CAAGCCAAAG TCACTGAATT CAATCATATG CTGCAACAAA CCCAGTCTTT GATTGAGCAA
ATTCAGCATG CAGCGGAAAA TGTACAAAAA ACGGTGAGTA ATATTGTGGA TGAATAA
|
|---|
| Protein sequence | MIWKPFMPFW KKAAAQSEVE QHNHDSDIVS ALKRNLAYIE FDPQGKILDA NALFLSAMGY
TKEEVIGQHH KIFCDPETVN SLEYAQFWKS LAQGQAQRKM FHRLKKDGSS IWIEATYMPV
RNRAGDVYKV TKVAHDVTKS KITADKQAAV FHALDRSSAM IQFNPDGTIK EANENFLKAT
GYRLEEIVGK HHRMFCDDRF YKENPNFWRE LARGEFKSGL FHRRTRHGQD LWLEATYNPI
FNDAGVVTQV VKFASDVTDQ VLKAHATKEA SQMAQQTSAE TVRVAESGRE MIDAAATIAS
GITESIAGAN ALMTDLSSQS QRITQIVTTI NKIAEQTNLL ALNAAIEAAR AGEYGRGFAV
VADEVRSLAS NTSQATSEID NIVKRNSQLT EQSGQTMEQI QAKVTEFNHM LQQTQSLIEQ
IQHAAENVQK TVSNIVDE
|
|---|
| |