More than 300 homologs were found in PanDaTox collection
for query gene Patl_0143 on replicon NC_008228
Organism: Pseudoalteromonas atlantica T6c



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_008228  Patl_0143  methyl-accepting chemotaxis sensory transducer  100 
 
 
539 aa  1084    Pseudoalteromonas atlantica T6c  Bacteria  normal  n/a   
 
 
-
 
NC_011138  MADE_01731  Methyl-accepting chemotaxis protein  60.67 
 
 
539 aa  651    Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  n/a   
 
 
-
 
NC_007912  Sde_0343  methyl-accepting chemotaxis sensory transducer  41 
 
 
547 aa  375  1e-102  Saccharophagus degradans 2-40  Bacteria  normal  0.0441023  normal  0.46066 
 
 
-
 
NC_008345  Sfri_2331  methyl-accepting chemotaxis sensory transducer  35.04 
 
 
538 aa  284  2.0000000000000002e-75  Shewanella frigidimarina NCIMB 400  Bacteria  normal  0.797541  n/a   
 
 
-
 
NC_007954  Sden_1600  chemotaxis sensory transducer  35.42 
 
 
538 aa  278  2e-73  Shewanella denitrificans OS217  Bacteria  hitchhiker  0.00759873  n/a   
 
 
-
 
NC_011901  Tgr7_1963  putative methyl-accepting chemotaxis sensory transducer  50 
 
 
637 aa  270  7e-71  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  0.870205  n/a   
 
 
-
 
NC_009831  Ssed_4463  methyl-accepting chemotaxis sensory transducer  47.23 
 
 
552 aa  262  1e-68  Shewanella sediminis HAW-EB3  Bacteria  normal  normal  0.43301 
 
 
-
 
NC_002947  PP_2823  methyl-accepting chemotaxis transducer  33.08 
 
 
550 aa  259  1e-67  Pseudomonas putida KT2440  Bacteria  normal  normal 
 
 
-
 
NC_007954  Sden_3010  chemotaxis sensory transducer  32.84 
 
 
539 aa  259  1e-67  Shewanella denitrificans OS217  Bacteria  normal  n/a   
 
 
-
 
NC_008340  Mlg_1937  methyl-accepting chemotaxis sensory transducer  42.58 
 
 
541 aa  252  1e-65  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  0.158854  normal  0.960341 
 
 
-
 
NC_009665  Shew185_3077  methyl-accepting chemotaxis sensory transducer  31.54 
 
 
539 aa  249  7e-65  Shewanella baltica OS185  Bacteria  normal  0.417897  n/a   
 
 
-
 
NC_009052  Sbal_3067  methyl-accepting chemotaxis sensory transducer  31.54 
 
 
539 aa  249  8e-65  Shewanella baltica OS155  Bacteria  normal  0.0971462  n/a   
 
 
-
 
NC_009997  Sbal195_3220  methyl-accepting chemotaxis sensory transducer  31.35 
 
 
539 aa  248  3e-64  Shewanella baltica OS195  Bacteria  normal  0.0243326  normal 
 
 
-
 
NC_011901  Tgr7_0851  methyl-accepting chemotaxis sensory transducer  41.58 
 
 
674 aa  244  3.9999999999999997e-63  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  0.244273  n/a   
 
 
-
 
NC_009997  Sbal195_3549  methyl-accepting chemotaxis sensory transducer  41.03 
 
 
548 aa  243  6e-63  Shewanella baltica OS195  Bacteria  normal  normal 
 
 
-
 
NC_007492  Pfl01_4715  chemotaxis sensory transducer  43.37 
 
 
713 aa  243  6e-63  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.233277  normal  0.171171 
 
 
-
 
NC_011663  Sbal223_3352  methyl-accepting chemotaxis sensory transducer  40.46 
 
 
573 aa  241  2.9999999999999997e-62  Shewanella baltica OS223  Bacteria  normal  0.729863  normal 
 
 
-
 
NC_009665  Shew185_3424  methyl-accepting chemotaxis sensory transducer  40.46 
 
 
548 aa  241  2.9999999999999997e-62  Shewanella baltica OS185  Bacteria  normal  n/a   
 
 
-
 
NC_009052  Sbal_0938  methyl-accepting chemotaxis sensory transducer  40.46 
 
 
548 aa  241  2.9999999999999997e-62  Shewanella baltica OS155  Bacteria  normal  n/a   
 
 
-
 
NC_009439  Pmen_3669  methyl-accepting chemotaxis sensory transducer  44.41 
 
 
716 aa  239  1e-61  Pseudomonas mendocina ymp  Bacteria  normal  0.170337  normal 
 
 
-
 
NC_009439  Pmen_2650  methyl-accepting chemotaxis sensory transducer  34.04 
 
 
568 aa  238  2e-61  Pseudomonas mendocina ymp  Bacteria  normal  normal 
 
 
-
 
NC_013889  TK90_0949  methyl-accepting chemotaxis sensory transducer  45.26 
 
 
636 aa  237  5.0000000000000005e-61  Thioalkalivibrio sp. K90mix  Bacteria  normal  normal  0.0451727 
 
 
-
 
NC_009901  Spea_4196  methyl-accepting chemotaxis sensory transducer  42.93 
 
 
552 aa  236  5.0000000000000005e-61  Shewanella pealeana ATCC 700345  Bacteria  normal  0.14959  n/a   
 
 
-
 
NC_013456  VEA_003896  methyl-accepting chemotaxis protein  39.74 
 
 
545 aa  236  8e-61  Vibrio sp. Ex25  Bacteria  decreased coverage  0.000288698  n/a   
 
 
-
 
NC_008700  Sama_0622  putative methyl-accepting chemotaxis sensory transducer  33.2 
 
 
539 aa  236  8e-61  Shewanella amazonensis SB2B  Bacteria  normal  normal  0.321986 
 
 
-
 
NC_008789  Hhal_0443  methyl-accepting chemotaxis sensory transducer  40.27 
 
 
541 aa  235  1.0000000000000001e-60  Halorhodospira halophila SL1  Bacteria  normal  n/a   
 
 
-
 
NC_008789  Hhal_0167  methyl-accepting chemotaxis sensory transducer  39.37 
 
 
540 aa  235  2.0000000000000002e-60  Halorhodospira halophila SL1  Bacteria  normal  n/a   
 
 
-
 
NC_008340  Mlg_1098  methyl-accepting chemotaxis sensory transducer  39.94 
 
 
637 aa  233  8.000000000000001e-60  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  0.0167241  normal 
 
 
-
 
NC_008740  Maqu_2346  methyl-accepting chemotaxis sensory transducer  39.31 
 
 
564 aa  231  2e-59  Marinobacter aquaeolei VT8  Bacteria  normal  n/a   
 
 
-
 
NC_011901  Tgr7_1674  methyl-accepting chemotaxis sensory transducer  45.51 
 
 
543 aa  231  2e-59  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_004347  SO_4053  methyl-accepting chemotaxis protein  42.3 
 
 
634 aa  229  7e-59  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_009656  PSPA7_5279  putative chemotaxis transducer  40.96 
 
 
712 aa  229  7e-59  Pseudomonas aeruginosa PA7  Bacteria  normal  0.0493383  n/a   
 
 
-
 
NC_009831  Ssed_3705  methyl-accepting chemotaxis sensory transducer  41.29 
 
 
541 aa  228  1e-58  Shewanella sediminis HAW-EB3  Bacteria  normal  0.0963791  normal 
 
 
-
 
NC_007912  Sde_0081  putative methyl-accepting chemotaxis sensory transducer  41.57 
 
 
544 aa  229  1e-58  Saccharophagus degradans 2-40  Bacteria  normal  normal 
 
 
-
 
NC_008577  Shewana3_3611  methyl-accepting chemotaxis sensory transducer  42.61 
 
 
634 aa  228  2e-58  Shewanella sp. ANA-3  Bacteria  normal  normal 
 
 
-
 
NC_008463  PA14_61300  putative chemotaxis transducer  40.68 
 
 
712 aa  228  3e-58  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal  0.862971 
 
 
-
 
NC_011901  Tgr7_1425  methyl-accepting chemotaxis sensory transducer  44.24 
 
 
438 aa  227  5.0000000000000005e-58  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_010506  Swoo_0732  methyl-accepting chemotaxis sensory transducer  40.06 
 
 
555 aa  226  7e-58  Shewanella woodyi ATCC 51908  Bacteria  normal  normal  0.177926 
 
 
-
 
NC_008345  Sfri_0524  methyl-accepting chemotaxis sensory transducer  31.48 
 
 
539 aa  225  1e-57  Shewanella frigidimarina NCIMB 400  Bacteria  normal  n/a   
 
 
-
 
NC_009438  Sputcn32_0619  methyl-accepting chemotaxis sensory transducer  42.44 
 
 
634 aa  225  2e-57  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_010322  PputGB1_5070  methyl-accepting chemotaxis sensory transducer  38.7 
 
 
638 aa  225  2e-57  Pseudomonas putida GB-1  Bacteria  normal  normal 
 
 
-
 
NC_009654  Mmwyl1_2432  methyl-accepting chemotaxis sensory transducer  39.39 
 
 
555 aa  224  2e-57  Marinomonas sp. MWYL1  Bacteria  hitchhiker  0.0013651  normal  0.119091 
 
 
-
 
NC_009439  Pmen_1998  methyl-accepting chemotaxis sensory transducer  42.32 
 
 
714 aa  225  2e-57  Pseudomonas mendocina ymp  Bacteria  normal  normal  0.0164438 
 
 
-
 
NC_008463  PA14_29760  putative chemotaxis transducer  43.22 
 
 
714 aa  225  2e-57  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal 
 
 
-
 
NC_009512  Pput_4894  methyl-accepting chemotaxis sensory transducer  38.72 
 
 
638 aa  223  4.9999999999999996e-57  Pseudomonas putida F1  Bacteria  normal  0.291281  normal 
 
 
-
 
NC_008345  Sfri_1939  methyl-accepting chemotaxis sensory transducer  40.95 
 
 
638 aa  223  8e-57  Shewanella frigidimarina NCIMB 400  Bacteria  normal  0.573171  n/a   
 
 
-
 
NC_002947  PP_5020  methyl-accepting chemotaxis sensory transducer  38.72 
 
 
638 aa  222  9.999999999999999e-57  Pseudomonas putida KT2440  Bacteria  normal  normal 
 
 
-
 
NC_003910  CPS_3864  methyl-accepting chemotaxis protein  38.57 
 
 
568 aa  221  1.9999999999999999e-56  Colwellia psychrerythraea 34H  Bacteria  normal  n/a   
 
 
-
 
NC_004578  PSPTO_0466  methyl-accepting chemotaxis protein  32.61 
 
 
541 aa  222  1.9999999999999999e-56  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_011901  Tgr7_0580  putative methyl-accepting chemotaxis sensory transducer  42.56 
 
 
679 aa  221  1.9999999999999999e-56  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_009656  PSPA7_2546  putative chemotaxis transducer  42.66 
 
 
714 aa  221  1.9999999999999999e-56  Pseudomonas aeruginosa PA7  Bacteria  normal  0.410637  n/a   
 
 
-
 
NC_011901  Tgr7_2492  methyl-accepting chemotaxis sensory transducer  45.19 
 
 
572 aa  221  3e-56  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_011663  Sbal223_3405  methyl-accepting chemotaxis sensory transducer with Cache sensor  39.78 
 
 
630 aa  220  3.9999999999999997e-56  Shewanella baltica OS223  Bacteria  normal  normal 
 
 
-
 
NC_013456  VEA_003139  methyl-accepting chemotaxis protein  40.11 
 
 
627 aa  221  3.9999999999999997e-56  Vibrio sp. Ex25  Bacteria  normal  0.116124  n/a   
 
 
-
 
NC_009052  Sbal_0882  methyl-accepting chemotaxis sensory transducer  39.78 
 
 
630 aa  220  3.9999999999999997e-56  Shewanella baltica OS155  Bacteria  normal  n/a   
 
 
-
 
NC_009997  Sbal195_3603  methyl-accepting chemotaxis sensory transducer  39.78 
 
 
630 aa  220  5e-56  Shewanella baltica OS195  Bacteria  normal  0.840663  normal 
 
 
-
 
NC_007520  Tcr_1999  methyl-accepting chemotaxis sensory transducer  37.96 
 
 
405 aa  220  5e-56  Thiomicrospira crunogena XCL-2  Bacteria  normal  n/a   
 
 
-
 
NC_009665  Shew185_3480  methyl-accepting chemotaxis sensory transducer  39.78 
 
 
630 aa  220  5e-56  Shewanella baltica OS185  Bacteria  normal  n/a   
 
 
-
 
NC_009656  PSPA7_4877  chemotactic transducer PctB  37.61 
 
 
629 aa  220  6e-56  Pseudomonas aeruginosa PA7  Bacteria  normal  0.164155  n/a   
 
 
-
 
NC_008740  Maqu_3644  methyl-accepting chemotaxis sensory transducer  38.87 
 
 
378 aa  220  6e-56  Marinobacter aquaeolei VT8  Bacteria  normal  n/a   
 
 
-
 
NC_009831  Ssed_1007  methyl-accepting chemotaxis sensory transducer  35.57 
 
 
573 aa  220  6e-56  Shewanella sediminis HAW-EB3  Bacteria  normal  0.02936  normal 
 
 
-
 
NC_008463  PA14_55960  chemotactic transducer PctC  37.14 
 
 
632 aa  219  7.999999999999999e-56  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  0.289325  normal 
 
 
-
 
NC_004347  SO_1056  methyl-accepting chemotaxis protein  39.78 
 
 
630 aa  219  8.999999999999998e-56  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_008463  PA14_26280  putative chemotaxis transducer  41.1 
 
 
545 aa  219  1e-55  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal  0.917899 
 
 
-
 
NC_008463  PA14_56010  chemotactic transducer PctB  37.61 
 
 
629 aa  219  1e-55  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal 
 
 
-
 
NC_011312  VSAL_I2130  methyl-accepting chemotaxis protein  40.06 
 
 
546 aa  218  2e-55  Aliivibrio salmonicida LFI1238  Bacteria  normal  0.665531  n/a   
 
 
-
 
NC_009092  Shew_0808  methyl-accepting chemotaxis sensory transducer  36.38 
 
 
554 aa  218  2e-55  Shewanella loihica PV-4  Bacteria  normal  normal 
 
 
-
 
NC_013889  TK90_2562  methyl-accepting chemotaxis sensory transducer  34.54 
 
 
671 aa  218  2e-55  Thioalkalivibrio sp. K90mix  Bacteria  normal  hitchhiker  0.0046581 
 
 
-
 
NC_008321  Shewmr4_3042  methyl-accepting chemotaxis sensory transducer  40.06 
 
 
630 aa  218  2e-55  Shewanella sp. MR-4  Bacteria  normal  normal  0.397129 
 
 
-
 
NC_003910  CPS_4964  methyl-accepting chemotaxis protein  39.5 
 
 
545 aa  217  2.9999999999999998e-55  Colwellia psychrerythraea 34H  Bacteria  normal  n/a   
 
 
-
 
NC_008322  Shewmr7_0930  methyl-accepting chemotaxis sensory transducer  39.78 
 
 
630 aa  216  5.9999999999999996e-55  Shewanella sp. MR-7  Bacteria  normal  normal  0.257402 
 
 
-
 
NC_002947  PP_3557  methyl-accepting chemotaxis transducer  41.69 
 
 
714 aa  216  7e-55  Pseudomonas putida KT2440  Bacteria  normal  0.386044  normal 
 
 
-
 
NC_009656  PSPA7_4874  chemotactic transducer PctC  36.86 
 
 
632 aa  216  7e-55  Pseudomonas aeruginosa PA7  Bacteria  normal  0.153332  n/a   
 
 
-
 
NC_009783  VIBHAR_01753  hypothetical protein  42.54 
 
 
545 aa  216  8e-55  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_004347  SO_3582  methyl-accepting chemotaxis protein  39.83 
 
 
541 aa  216  8e-55  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_009512  Pput_2217  methyl-accepting chemotaxis sensory transducer  41.69 
 
 
714 aa  216  8e-55  Pseudomonas putida F1  Bacteria  normal  normal 
 
 
-
 
NC_013422  Hneap_1124  methyl-accepting chemotaxis sensory transducer  39.22 
 
 
547 aa  216  9.999999999999999e-55  Halothiobacillus neapolitanus c2  Bacteria  hitchhiker  0.00163985  n/a   
 
 
-
 
NC_009439  Pmen_2000  methyl-accepting chemotaxis sensory transducer  39.15 
 
 
560 aa  215  9.999999999999999e-55  Pseudomonas mendocina ymp  Bacteria  normal  0.0144557  normal  0.0324669 
 
 
-
 
NC_008740  Maqu_2789  methyl-accepting chemotaxis sensory transducer  40.98 
 
 
545 aa  214  1.9999999999999998e-54  Marinobacter aquaeolei VT8  Bacteria  normal  0.888266  n/a   
 
 
-
 
NC_007492  Pfl01_0447  chemotaxis sensory transducer  35.48 
 
 
541 aa  215  1.9999999999999998e-54  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal 
 
 
-
 
NC_011901  Tgr7_0712  putative methyl-accepting chemotaxis sensory transducer  43.48 
 
 
624 aa  215  1.9999999999999998e-54  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_010506  Swoo_3725  methyl-accepting chemotaxis sensory transducer  35.15 
 
 
620 aa  215  1.9999999999999998e-54  Shewanella woodyi ATCC 51908  Bacteria  normal  0.403145  normal 
 
 
-
 
NC_008577  Shewana3_0895  methyl-accepting chemotaxis sensory transducer  39.5 
 
 
630 aa  214  2.9999999999999995e-54  Shewanella sp. ANA-3  Bacteria  normal  normal  0.174985 
 
 
-
 
NC_007912  Sde_0391  methyl-accepting chemotaxis sensory transducer  37.43 
 
 
499 aa  214  2.9999999999999995e-54  Saccharophagus degradans 2-40  Bacteria  normal  0.0811848  normal 
 
 
-
 
NC_008700  Sama_2607  putative methyl-accepting chemotaxis sensory transducer  40.68 
 
 
541 aa  214  2.9999999999999995e-54  Shewanella amazonensis SB2B  Bacteria  hitchhiker  0.00122932  normal 
 
 
-
 
NC_010506  Swoo_4795  methyl-accepting chemotaxis sensory transducer  40.63 
 
 
638 aa  214  2.9999999999999995e-54  Shewanella woodyi ATCC 51908  Bacteria  normal  0.884167  hitchhiker  0.000462611 
 
 
-
 
NC_004578  PSPTO_3379  methyl-accepting chemotaxis protein  39.89 
 
 
559 aa  214  3.9999999999999995e-54  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_009456  VC0395_1102  methyl-accepting chemotaxis protein  39.44 
 
 
638 aa  214  3.9999999999999995e-54  Vibrio cholerae O395  Bacteria  normal  n/a   
 
 
-
 
NC_009092  Shew_0085  methyl-accepting chemotaxis sensory transducer  38.86 
 
 
638 aa  214  3.9999999999999995e-54  Shewanella loihica PV-4  Bacteria  normal  0.0647334  normal 
 
 
-
 
NC_008463  PA14_56000  chemotactic transducer PctA  38.75 
 
 
629 aa  213  4.9999999999999996e-54  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  0.0512673  normal 
 
 
-
 
NC_011312  VSAL_I1951  methyl-accepting chemotaxis protein  38.6 
 
 
720 aa  213  5.999999999999999e-54  Aliivibrio salmonicida LFI1238  Bacteria  normal  n/a   
 
 
-
 
NC_009512  Pput_2091  methyl-accepting chemotaxis sensory transducer  35.73 
 
 
541 aa  213  7e-54  Pseudomonas putida F1  Bacteria  normal  0.596764  normal 
 
 
-
 
NC_011138  MADE_00464  methyl-accepting chemotaxis protein  38.67 
 
 
636 aa  213  7e-54  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  n/a   
 
 
-
 
NC_010506  Swoo_0808  methyl-accepting chemotaxis sensory transducer  37.41 
 
 
541 aa  213  7e-54  Shewanella woodyi ATCC 51908  Bacteria  normal  normal 
 
 
-
 
NC_008789  Hhal_1714  methyl-accepting chemotaxis sensory transducer  36.34 
 
 
673 aa  213  9e-54  Halorhodospira halophila SL1  Bacteria  normal  0.712235  n/a   
 
 
-
 
NC_009656  PSPA7_4876  chemotactic transducer PctA  38.44 
 
 
629 aa  212  1e-53  Pseudomonas aeruginosa PA7  Bacteria  normal  0.647167  n/a   
 
 
-
 
NC_009654  Mmwyl1_0219  methyl-accepting chemotaxis sensory transducer  38.87 
 
 
773 aa  212  1e-53  Marinomonas sp. MWYL1  Bacteria  normal  0.952357  normal 
 
 
-
 
NC_011146  Gbem_3600  methyl-accepting chemotaxis sensory transducer  38.48 
 
 
546 aa  211  2e-53  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_007912  Sde_2316  putative methyl-accepting chemotaxis sensory transducer  37.53 
 
 
548 aa  211  2e-53  Saccharophagus degradans 2-40  Bacteria  normal  normal  0.0208981 
 
 
-
 
NC_004349  SO_A0106  methyl-accepting chemotaxis protein  36.39 
 
 
546 aa  211  3e-53  Shewanella oneidensis MR-1  Bacteria  normal  0.827543  n/a   
 
 
-
 
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