Gene Hhal_1714 details

Gene Information

• Locus tag: Hhal_1714
• ID: 4710188
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Halorhodospira halophila SL1
• Kingdom: Bacteria
• Replicon accession: NC_008789
• Strand: -
• Start bp: 1875113
• End bp: 1877134
• Gene Length: 2022 bp
• Protein Length: 673 aa
• Translation table: 11
• GC content: 68%
• IMG OID: 639856181
• Product: methyl-accepting chemotaxis sensory transducer
• Protein accession: YP_001003280
• Protein GI: 121998493
• COG category: [N] Cell motility; [T] Signal transduction mechanisms
• COG ID: [COG0840] Methyl-accepting chemotaxis protein

Plasmid Coverage information

• Num covering plasmid clones: 14
• Plasmid unclonability p-value: 0.712235
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCGCATCC GATGGAAGCT CGGTACGGGG TTCGGTCTGG TCATCGGTCT GGCCGGTGCT 
TTGGGTGCCG TGGCGGTATG GCAGTTGGGG ACCATTGACG ACCACGCTAC GGAGCTCCGC 
GAGGAGGTGT TGCCCGAGCT GCTGGCGGCA CGGCAGATCG AGGCATATGT GCAGCAGAGC 
GCCGAGCGCT GGCAGGAGTA CGGTCTGACC CACCAACCCG AGGCTGCGGA GCGGGCCGCA 
GAGGCCCACG ATGCGGCCGT AGCGCAGATC GAGCAGGTGC GAGCCGGCAG TCACGGGCGC 
ATGGCCGAGT TTGCCGAGCG CGCCGAGGCC GCCATGGGGG CCTACCGCGA TGCCACCGAT 
GCCACGGAGG ATGCCGTGGG GCGGTTGCGG GAGGAGCGGG ACGGGCTGAT GCGCTCAGCT 
ACCATCGCCC TGGAAGAGAC GCAGTACCTG CTGGATGAGC AGCGTGAGCG GGTCGAGGAC 
GCCCAGGCGG CGGATTTCCG GGCGCCCGCC GGGCAGAGCG CTGCCGACGT ACGCACCCGC 
CGGTTGCAGG ATCTCTCGCG CCTGAACGAG ATCCGCGTGG TTACCGGGGA CATCCACCGT 
GCCGCCCTGC AGTCTCTGGA AACCCGCGAT CCGATACGGC TGCAGGGCGC CCTGCCGGGG 
TTCGGGCAGG TCCAGGTGCA CTTCAGTATC CTGCGCGCCA ACGCCGCTGA CGAGCAGGAG 
CAACAGATCC TCGAGGAGAT CAACGACGCG ATTATCGAGT ACCAGGATTA CGCCACCGGA 
CTGGCCGAGG CGCAGGAGGC GCTGGCCGAG CTGCGCCATG TGCGGGCCGA GACCAGCGAG 
CAGGCCCTCG GGGCGGTGGT GGATCTGGCC AATCATACCG CCGAGAATGG CGAGCGGGCC 
AGTGAGGGGG TCGTCGGCGT GGTCCGCGAG GCCGGGGCGA CCCTGGGCAT CGGGCTGTTT 
CTGGTCGGCC TCCTGGCCTT CGGTATCGCG GCGTGGACCA CGCGATCACT GACCCAGCCG 
CTGGGCCAGC TGGTCCATGG CCTGCGCGAC ATCGCCGAGG GTGAGGGCGA CTTGACCCGC 
CGGGTCGACG AGCGCCGGGC CGATGAACTG GGTGACGTTG GCTATTGGTT CAACCGCCTG 
ATGGATCGGA TCCACGGCAT GATCGTGCAG CTCTCCGGGG CGAGCCGGGA TGTCACCGAC 
GGCGTTGCGC GGATTGCCGC TAGCAATGCC CAGATCGAGT CGGGCATGAC CGAGCAGTCG 
GATCAGACGC AGCAGGTCTC CAGCGCCATC GAGGAGATGT CGAGTTCGAT CCACGATGTC 
TCGCGCCAGA CCAGCGAGGC GGCTAGTGCG GCGGTGCAGG CCGGGGAGAC GGCCGCCGAT 
GGTCGAGAAA CGGTCCAAGG TCTGGTGACC CGGATGCAGG AGGTCGCCGC CAGCGTCGAG 
CGTGCCGGCG AGGCGGTGAC CGCCCTTGGA CACAGTGGCG AGCAGATCGG CGAGATCATC 
TCGATGATCG ACGGCATCGC CGAACAGACC AACCTGCTCG CTCTCAATGC TGCCATCGAG 
GCGGCCCGTG CCGGTGAGCA GGGGCGCGGT TTCGCCGTGG TTGCCGACGA AGTACGCTCC 
CTGTCCCAGC GGACGGTGGA TGCCACACAG CAGGTGTCCG AGGCGCTGCA GCAGATCCAG 
GAGCGCACCG ACACCGCCGT GCAGGGTATG CAGCAGAGTT CCGGGCAGGT CAACGACGGT 
CTGGGGCAGG CCGAGGCCGC CGGGGCGGCC CTGCAACGAA TTGTCGAGAA GGCACAGAGC 
GTCGCCGAGA ACGTGCAGTC CATCGCGACG GCCGCCGAGC AACAGTCGAA TGTCGCCGCC 
GAGATCGCGC AGAATGTGGA TGCGGTCAAT CAGGTCACCC AGCAGACCAG CGGCGGCGTC 
AACCAGGCCG CGCAGACCGC CCAGCAGCTG CGGCGTGAGG CCGAGGCCCT GCAGGAGTTG 
GTGCAGCAGT TCAAGGTGAC AGAGGGTGGC CCGTCATCGT GA 

 

Protein sequence

MRIRWKLGTG FGLVIGLAGA LGAVAVWQLG TIDDHATELR EEVLPELLAA RQIEAYVQQS 
AERWQEYGLT HQPEAAERAA EAHDAAVAQI EQVRAGSHGR MAEFAERAEA AMGAYRDATD 
ATEDAVGRLR EERDGLMRSA TIALEETQYL LDEQRERVED AQAADFRAPA GQSAADVRTR 
RLQDLSRLNE IRVVTGDIHR AALQSLETRD PIRLQGALPG FGQVQVHFSI LRANAADEQE 
QQILEEINDA IIEYQDYATG LAEAQEALAE LRHVRAETSE QALGAVVDLA NHTAENGERA 
SEGVVGVVRE AGATLGIGLF LVGLLAFGIA AWTTRSLTQP LGQLVHGLRD IAEGEGDLTR 
RVDERRADEL GDVGYWFNRL MDRIHGMIVQ LSGASRDVTD GVARIAASNA QIESGMTEQS 
DQTQQVSSAI EEMSSSIHDV SRQTSEAASA AVQAGETAAD GRETVQGLVT RMQEVAASVE 
RAGEAVTALG HSGEQIGEII SMIDGIAEQT NLLALNAAIE AARAGEQGRG FAVVADEVRS 
LSQRTVDATQ QVSEALQQIQ ERTDTAVQGM QQSSGQVNDG LGQAEAAGAA LQRIVEKAQS 
VAENVQSIAT AAEQQSNVAA EIAQNVDAVN QVTQQTSGGV NQAAQTAQQL RREAEALQEL 
VQQFKVTEGG PSS