More than 300 homologs were found in PanDaTox collection
for query gene Bamb_1352 on replicon NC_008390
Organism: Burkholderia ambifaria AMMD



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_008390  Bamb_1352  short chain dehydrogenase  100 
 
 
204 aa  398  9.999999999999999e-111  Burkholderia ambifaria AMMD  Bacteria  normal  0.297804  n/a   
 
 
-
 
NC_010551  BamMC406_1392  short chain dehydrogenase  98.04 
 
 
237 aa  393  1e-108  Burkholderia ambifaria MC40-6  Bacteria  normal  0.663645  normal 
 
 
-
 
NC_010508  Bcenmc03_1445  short chain dehydrogenase  91.67 
 
 
237 aa  363  1e-100  Burkholderia cenocepacia MC0-3  Bacteria  normal  0.109689  normal 
 
 
-
 
NC_008060  Bcen_0985  short chain dehydrogenase  91.18 
 
 
237 aa  359  2e-98  Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_008542  Bcen2424_1467  short chain dehydrogenase  91.18 
 
 
237 aa  359  2e-98  Burkholderia cenocepacia HI2424  Bacteria  normal  n/a   
 
 
-
 
NC_007434  BURPS1710b_1880  short chain dehydrogenase  78.26 
 
 
270 aa  296  1e-79  Burkholderia pseudomallei 1710b  Bacteria  normal  0.0386097  n/a   
 
 
-
 
NC_010623  Bphy_5398  short chain dehydrogenase  74.63 
 
 
237 aa  296  1e-79  Burkholderia phymatum STM815  Bacteria  normal  0.448232  normal  0.960589 
 
 
-
 
NC_006348  BMA1106  short chain dehydrogenase  78.26 
 
 
240 aa  296  2e-79  Burkholderia mallei ATCC 23344  Bacteria  normal  0.256004  n/a   
 
 
-
 
NC_008785  BMASAVP1_A1548  short chain dehydrogenase  78.26 
 
 
240 aa  296  2e-79  Burkholderia mallei SAVP1  Bacteria  normal  n/a   
 
 
-
 
NC_008836  BMA10229_A0211  short chain dehydrogenase  78.26 
 
 
240 aa  296  2e-79  Burkholderia mallei NCTC 10229  Bacteria  normal  0.0327074  n/a   
 
 
-
 
NC_009080  BMA10247_0953  short chain dehydrogenase  78.26 
 
 
240 aa  296  2e-79  Burkholderia mallei NCTC 10247  Bacteria  normal  n/a   
 
 
-
 
NC_009076  BURPS1106A_1727  short chain dehydrogenase  78.26 
 
 
240 aa  291  4e-78  Burkholderia pseudomallei 1106a  Bacteria  normal  0.169393  n/a   
 
 
-
 
NC_007651  BTH_I2606  short chain dehydrogenase  75.36 
 
 
240 aa  290  1e-77  Burkholderia thailandensis E264  Bacteria  normal  n/a   
 
 
-
 
NC_009074  BURPS668_1701  short chain dehydrogenase  77.78 
 
 
240 aa  290  1e-77  Burkholderia pseudomallei 668  Bacteria  normal  0.553815  n/a   
 
 
-
 
NC_010511  M446_3511  short chain dehydrogenase  67 
 
 
237 aa  249  2e-65  Methylobacterium sp. 4-46  Bacteria  normal  normal 
 
 
-
 
NC_009720  Xaut_1592  short chain dehydrogenase  65 
 
 
236 aa  235  4e-61  Xanthobacter autotrophicus Py2  Bacteria  normal  0.512946  normal 
 
 
-
 
NC_002939  GSU0802  short chain dehydrogenase  45.6 
 
 
238 aa  157  8e-38  Geobacter sulfurreducens PCA  Bacteria  normal  0.414553  n/a   
 
 
-
 
NC_011369  Rleg2_2087  short chain dehydrogenase  42.03 
 
 
245 aa  140  1.9999999999999998e-32  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.319948  normal  0.613238 
 
 
-
 
NC_009784  VIBHAR_06495  oxidoreductase  40.32 
 
 
222 aa  133  9.999999999999999e-31  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_013131  Caci_7193  short-chain dehydrogenase/reductase SDR  40.88 
 
 
250 aa  132  3.9999999999999996e-30  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.839106  normal 
 
 
-
 
NC_012850  Rleg_2324  short chain dehydrogenase  40.98 
 
 
245 aa  131  6.999999999999999e-30  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal 
 
 
-
 
NC_013131  Caci_4560  short-chain dehydrogenase/reductase SDR  39.42 
 
 
241 aa  130  1.0000000000000001e-29  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.84586  normal 
 
 
-
 
NC_013131  Caci_1079  short-chain dehydrogenase/reductase SDR  37.13 
 
 
237 aa  128  6e-29  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.236839  normal 
 
 
-
 
NC_007492  Pfl01_2913  Short-chain dehydrogenase/reductase SDR  38.71 
 
 
234 aa  125  4.0000000000000003e-28  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal  0.98827 
 
 
-
 
NC_008391  Bamb_4739  short-chain dehydrogenase/reductase SDR  38.1 
 
 
245 aa  120  1.9999999999999998e-26  Burkholderia ambifaria AMMD  Bacteria  normal  0.93473  normal  0.931681 
 
 
-
 
NC_011145  AnaeK_2958  short-chain dehydrogenase/reductase SDR  40.19 
 
 
238 aa  119  3e-26  Anaeromyxobacter sp. K  Bacteria  normal  n/a   
 
 
-
 
NC_011891  A2cp1_3062  short-chain dehydrogenase/reductase SDR  40.22 
 
 
238 aa  116  1.9999999999999998e-25  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  n/a   
 
 
-
 
NC_013132  Cpin_6186  short-chain dehydrogenase/reductase SDR  32.97 
 
 
246 aa  116  1.9999999999999998e-25  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal  0.139456 
 
 
-
 
NC_012850  Rleg_3578  short-chain dehydrogenase/reductase SDR  36.76 
 
 
238 aa  115  3e-25  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.261739  normal  0.184222 
 
 
-
 
NC_012853  Rleg_5752  short-chain dehydrogenase/reductase SDR  38.8 
 
 
248 aa  116  3e-25  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.213287  normal 
 
 
-
 
NC_012850  Rleg_2533  short-chain dehydrogenase/reductase SDR  38.92 
 
 
243 aa  114  1.0000000000000001e-24  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal 
 
 
-
 
NC_010505  Mrad2831_3756  short-chain dehydrogenase/reductase SDR  39.81 
 
 
244 aa  114  1.0000000000000001e-24  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal  0.0174696 
 
 
-
 
NC_011369  Rleg2_3279  short-chain dehydrogenase/reductase SDR  37.25 
 
 
238 aa  113  2.0000000000000002e-24  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal  0.996874 
 
 
-
 
NC_011891  A2cp1_3326  short chain dehydrogenase  44.51 
 
 
246 aa  112  4.0000000000000004e-24  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  n/a   
 
 
-
 
NC_012856  Rpic12D_1849  short-chain dehydrogenase/reductase SDR  41.1 
 
 
237 aa  112  5e-24  Ralstonia pickettii 12D  Bacteria  normal  hitchhiker  0.00951861 
 
 
-
 
NC_010682  Rpic_2173  short-chain dehydrogenase/reductase SDR  41.1 
 
 
237 aa  112  5e-24  Ralstonia pickettii 12J  Bacteria  normal  0.129059  normal  0.0371904 
 
 
-
 
NC_007760  Adeh_3131  short chain dehydrogenase  44.51 
 
 
250 aa  111  7.000000000000001e-24  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  0.351639  n/a   
 
 
-
 
NC_009675  Anae109_3655  short-chain dehydrogenase/reductase SDR  39.81 
 
 
259 aa  110  1.0000000000000001e-23  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  0.429144  normal 
 
 
-
 
NC_011145  AnaeK_3239  short chain dehydrogenase  43.9 
 
 
245 aa  110  2.0000000000000002e-23  Anaeromyxobacter sp. K  Bacteria  normal  0.161967  n/a   
 
 
-
 
NC_008061  Bcen_2988  short-chain dehydrogenase/reductase SDR  34.48 
 
 
245 aa  110  2.0000000000000002e-23  Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_010515  Bcenmc03_4892  short-chain dehydrogenase/reductase SDR  34.48 
 
 
245 aa  110  2.0000000000000002e-23  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal 
 
 
-
 
NC_008543  Bcen2424_5378  short-chain dehydrogenase/reductase SDR  35.03 
 
 
205 aa  108  7.000000000000001e-23  Burkholderia cenocepacia HI2424  Bacteria  normal  normal 
 
 
-
 
NC_007511  Bcep18194_B2086  Short-chain dehydrogenase/reductase SDR  37.56 
 
 
245 aa  107  1e-22  Burkholderia sp. 383  Bacteria  decreased coverage  0.00879174  normal  0.332592 
 
 
-
 
NC_013132  Cpin_3482  short-chain dehydrogenase/reductase SDR  33.9 
 
 
248 aa  105  3e-22  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_013131  Caci_5080  short chain dehydrogenase  40.85 
 
 
240 aa  100  1e-20  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal  0.172125 
 
 
-
 
NC_010184  BcerKBAB4_2386  short-chain dehydrogenase/reductase SDR  30.3 
 
 
238 aa  99.8  3e-20  Bacillus weihenstephanensis KBAB4  Bacteria  normal  0.290784  n/a   
 
 
-
 
NC_011772  BCG9842_B2779  short chain dehydrogenase  29.29 
 
 
238 aa  99.4  4e-20  Bacillus cereus G9842  Bacteria  normal  hitchhiker  0.000000000967722 
 
 
-
 
NC_011725  BCB4264_A2546  short chain dehydrogenase  28.79 
 
 
238 aa  95.5  4e-19  Bacillus cereus B4264  Bacteria  normal  n/a   
 
 
-
 
NC_007777  Francci3_2624  short-chain dehydrogenase/reductase SDR  33.33 
 
 
239 aa  93.2  2e-18  Frankia sp. CcI3  Bacteria  normal  normal  0.0910719 
 
 
-
 
NC_013131  Caci_0074  short-chain dehydrogenase/reductase SDR  36.54 
 
 
246 aa  90.9  1e-17  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_013926  Aboo_0217  short-chain dehydrogenase/reductase SDR  31.58 
 
 
240 aa  88.2  9e-17  Aciduliprofundum boonei T469  Archaea  normal  n/a   
 
 
-
 
NC_013757  Gobs_0738  short-chain dehydrogenase/reductase SDR  35.33 
 
 
249 aa  82.4  0.000000000000005  Geodermatophilus obscurus DSM 43160  Bacteria  normal  0.964587  n/a   
 
 
-
 
NC_007974  Rmet_4327  putative short chain dehydrogenase  48.86 
 
 
140 aa  81.6  0.000000000000008  Cupriavidus metallidurans CH34  Bacteria  normal  normal 
 
 
-
 
NC_009380  Strop_2799  3-oxoacyl-(acyl-carrier-protein) reductase  33.33 
 
 
246 aa  80.1  0.00000000000002  Salinispora tropica CNB-440  Bacteria  normal  0.786413  normal 
 
 
-
 
NC_009656  PSPA7_4285  short chain dehydrogenase/reductase family oxidoreductase  33.68 
 
 
249 aa  80.5  0.00000000000002  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_008528  OEOE_0938  Short-chain alcohol dehydrogenase  28.65 
 
 
242 aa  79  0.00000000000004  Oenococcus oeni PSU-1  Bacteria  hitchhiker  0.00746042  n/a   
 
 
-
 
NC_010831  Cphamn1_0180  3-oxoacyl-(acyl-carrier-protein) reductase  28.87 
 
 
245 aa  79  0.00000000000004  Chlorobium phaeobacteroides BS1  Bacteria  hitchhiker  0.00307059  normal 
 
 
-
 
NC_010505  Mrad2831_1756  short-chain dehydrogenase/reductase SDR  33.92 
 
 
256 aa  79  0.00000000000005  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal 
 
 
-
 
NC_009718  Fnod_0609  short-chain dehydrogenase/reductase SDR  27.64 
 
 
232 aa  79  0.00000000000005  Fervidobacterium nodosum Rt17-B1  Bacteria  hitchhiker  0.000037264  n/a   
 
 
-
 
NC_013595  Sros_4576  short-chain dehydrogenase/reductase SDR  33.7 
 
 
248 aa  77.4  0.0000000000001  Streptosporangium roseum DSM 43021  Bacteria  normal  0.716912  normal  0.113643 
 
 
-
 
NC_011830  Dhaf_2477  short-chain dehydrogenase/reductase SDR  31.32 
 
 
236 aa  75.9  0.0000000000003  Desulfitobacterium hafniense DCB-2  Bacteria  normal  0.433499  n/a   
 
 
-
 
NC_009832  Spro_2052  short-chain dehydrogenase/reductase SDR  30.43 
 
 
248 aa  76.3  0.0000000000003  Serratia proteamaculans 568  Bacteria  normal  normal 
 
 
-
 
NC_008146  Mmcs_1542  short-chain dehydrogenase/reductase SDR  31.94 
 
 
256 aa  76.6  0.0000000000003  Mycobacterium sp. MCS  Bacteria  normal  0.694275  n/a   
 
 
-
 
NC_010483  TRQ2_1110  3-oxoacyl-(acyl-carrier-protein) reductase  30.15 
 
 
246 aa  76.3  0.0000000000003  Thermotoga sp. RQ2  Bacteria  normal  n/a   
 
 
-
 
NC_009077  Mjls_1513  short-chain dehydrogenase/reductase SDR  31.94 
 
 
256 aa  76.6  0.0000000000003  Mycobacterium sp. JLS  Bacteria  normal  0.71611  normal 
 
 
-
 
NC_008705  Mkms_1565  short-chain dehydrogenase/reductase SDR  31.94 
 
 
256 aa  76.6  0.0000000000003  Mycobacterium sp. KMS  Bacteria  normal  normal 
 
 
-
 
NC_009486  Tpet_1020  3-oxoacyl-(acyl-carrier-protein) reductase  30.15 
 
 
246 aa  75.9  0.0000000000004  Thermotoga petrophila RKU-1  Bacteria  normal  0.0122832  n/a   
 
 
-
 
NC_011757  Mchl_1526  short-chain dehydrogenase/reductase SDR  32.67 
 
 
254 aa  75.9  0.0000000000004  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal 
 
 
-
 
NC_011059  Paes_0175  3-oxoacyl-(acyl-carrier-protein) reductase  27.72 
 
 
247 aa  75.5  0.0000000000005  Prosthecochloris aestuarii DSM 271  Bacteria  normal  normal 
 
 
-
 
NC_009720  Xaut_2698  short-chain dehydrogenase/reductase SDR  36.18 
 
 
267 aa  75.5  0.0000000000005  Xanthobacter autotrophicus Py2  Bacteria  normal  normal  0.257261 
 
 
-
 
NC_009656  PSPA7_3225  bacilysin biosynthesis oxidoreductase BacC  32.58 
 
 
242 aa  75.1  0.0000000000006  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_008639  Cpha266_2492  3-oxoacyl-[acyl-carrier-protein] reductase  28.88 
 
 
245 aa  75.1  0.0000000000006  Chlorobium phaeobacteroides DSM 266  Bacteria  normal  n/a   
 
 
-
 
NC_008786  Veis_0996  short-chain dehydrogenase/reductase SDR  32.67 
 
 
252 aa  75.1  0.0000000000006  Verminephrobacter eiseniae EF01-2  Bacteria  normal  normal 
 
 
-
 
NC_007912  Sde_3393  2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase  29.27 
 
 
248 aa  75.1  0.0000000000008  Saccharophagus degradans 2-40  Bacteria  normal  normal  0.453301 
 
 
-
 
NC_007511  Bcep18194_B2225  Short-chain dehydrogenase/reductase SDR  39.83 
 
 
267 aa  74.7  0.0000000000009  Burkholderia sp. 383  Bacteria  normal  normal  0.801106 
 
 
-
 
NC_013131  Caci_6492  short-chain dehydrogenase/reductase SDR  46.43 
 
 
241 aa  74.7  0.0000000000009  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_009338  Mflv_2071  short-chain dehydrogenase/reductase SDR  32.21 
 
 
258 aa  73.9  0.000000000001  Mycobacterium gilvum PYR-GCK  Bacteria  normal  0.70228  normal  0.023925 
 
 
-
 
NC_008148  Rxyl_2474  short-chain dehydrogenase/reductase SDR  33.87 
 
 
263 aa  73.9  0.000000000001  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  0.170949  n/a   
 
 
-
 
NC_013739  Cwoe_4884  short-chain dehydrogenase/reductase SDR  32.99 
 
 
274 aa  73.2  0.000000000002  Conexibacter woesei DSM 14684  Bacteria  normal  normal 
 
 
-
 
NC_007517  Gmet_1601  3-oxoacyl-[acyl-carrier-protein] reductase  31.38 
 
 
246 aa  73.6  0.000000000002  Geobacter metallireducens GS-15  Bacteria  normal  0.0250629  normal  0.870822 
 
 
-
 
NC_010172  Mext_1326  short-chain dehydrogenase/reductase SDR  31.68 
 
 
254 aa  73.9  0.000000000002  Methylobacterium extorquens PA1  Bacteria  normal  normal  0.393683 
 
 
-
 
NC_008146  Mmcs_4116  short-chain dehydrogenase/reductase SDR  30.43 
 
 
256 aa  73.2  0.000000000002  Mycobacterium sp. MCS  Bacteria  normal  0.165575  n/a   
 
 
-
 
NC_011071  Smal_0927  short chain dehydrogenase  38.02 
 
 
200 aa  73.6  0.000000000002  Stenotrophomonas maltophilia R551-3  Bacteria  normal  0.115438  normal 
 
 
-
 
NC_009077  Mjls_4347  short-chain dehydrogenase/reductase SDR  30.43 
 
 
256 aa  73.2  0.000000000002  Mycobacterium sp. JLS  Bacteria  normal  normal  0.206497 
 
 
-
 
NC_008705  Mkms_4191  short-chain dehydrogenase/reductase SDR  30.43 
 
 
256 aa  73.2  0.000000000002  Mycobacterium sp. KMS  Bacteria  normal  normal 
 
 
-
 
NC_009953  Sare_1066  short-chain dehydrogenase/reductase SDR  32.65 
 
 
234 aa  73.2  0.000000000003  Salinispora arenicola CNS-205  Bacteria  normal  0.221746  normal  0.0212463 
 
 
-
 
NC_009675  Anae109_2552  short-chain dehydrogenase/reductase SDR  33.53 
 
 
262 aa  72.8  0.000000000003  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  0.442854  normal  0.93857 
 
 
-
 
NC_011662  Tmz1t_2828  short-chain dehydrogenase/reductase SDR  34.67 
 
 
250 aa  73.2  0.000000000003  Thauera sp. MZ1T  Bacteria  normal  n/a   
 
 
-
 
NC_009441  Fjoh_4926  short-chain dehydrogenase/reductase SDR  29.57 
 
 
250 aa  72.8  0.000000000003  Flavobacterium johnsoniae UW101  Bacteria  normal  n/a   
 
 
-
 
NC_012793  GWCH70_0470  enoyl-(acyl carrier protein) reductase  32.26 
 
 
249 aa  72.8  0.000000000003  Geobacillus sp. WCH70  Bacteria  hitchhiker  0.00000863447  n/a   
 
 
-
 
NC_004310  BR1122  short chain dehydrogenase/reductase family oxidoreductase  31.72 
 
 
246 aa  72.4  0.000000000004  Brucella suis 1330  Bacteria  normal  0.0726405  n/a   
 
 
-
 
NC_009505  BOV_1080  short chain dehydrogenase/reductase family oxidoreductase  31.72 
 
 
246 aa  72.4  0.000000000004  Brucella ovis ATCC 25840  Bacteria  normal  0.38691  n/a   
 
 
-
 
NC_013165  Shel_01070  3-oxoacyl-(acyl-carrier-protein) reductase  31.25 
 
 
238 aa  72.8  0.000000000004  Slackia heliotrinireducens DSM 20476  Bacteria  normal  normal  0.256883 
 
 
-
 
NC_011887  Mnod_7850  short-chain dehydrogenase/reductase SDR  34.08 
 
 
256 aa  72.8  0.000000000004  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_014148  Plim_3181  short-chain dehydrogenase/reductase SDR  30.11 
 
 
260 aa  72.8  0.000000000004  Planctomyces limnophilus DSM 3776  Bacteria  normal  0.100274  n/a   
 
 
-
 
NC_013132  Cpin_2893  short-chain dehydrogenase/reductase SDR  30.23 
 
 
255 aa  72  0.000000000005  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_009092  Shew_1603  3-oxoacyl-(acyl-carrier-protein) reductase  26.74 
 
 
248 aa  72  0.000000000005  Shewanella loihica PV-4  Bacteria  unclonable  0.0000000401343  decreased coverage  0.000161546 
 
 
-
 
NC_013595  Sros_4145  short-chain dehydrogenase/reductase SDR  33.33 
 
 
246 aa  72.4  0.000000000005  Streptosporangium roseum DSM 43021  Bacteria  normal  normal  0.0139206 
 
 
-
 
NC_010505  Mrad2831_0062  short-chain dehydrogenase/reductase SDR  31.5 
 
 
255 aa  72  0.000000000005  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.710312  normal 
 
 
-
 
NC_009427  Saro_3460  short-chain dehydrogenase/reductase SDR  29.63 
 
 
245 aa  72  0.000000000005  Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  n/a   
 
 
-
 
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