| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bcenmc03_1445 |
|---|
| Symbol | |
|---|
| ID | 6123123 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia cenocepacia MC0-3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010508 |
|---|
| Strand | - |
|---|
| Start bp | 1599748 |
|---|
| End bp | 1600461 |
|---|
| Gene Length | 714 bp |
|---|
| Protein Length | 237 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 641638021 |
|---|
| Product | short chain dehydrogenase |
|---|
| Protein accession | YP_001764742 |
|---|
| Protein GI | 170732795 |
|---|
| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
|---|
| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 0.109689 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 25 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGACGATC TGCTCCACGG AAAGACAGTA CTCGTCGTCG GCGGCAGCTC CGGTATCGGC
GCCGCCACCG CAGCAGCATT CGCGCGGCGC GGCGCGCGGG TGACGATCGC TTCGCGCGAT
CCACGCCGGT TCGACATCGA CGCCCTGCCG GGCGCGCACG TGCGGACCGA AACGCTCGAC
ATCACCGATA CGGCGGATGT CGATGCGTTC TGCGCACGCG CCGGCCGGTT CGACCACGTC
GTGATTTCTG CCGCGAAGAC GGCCACGGGC GCGGTCCGTG CGCTGCCGCT CGCCGACGCG
CAGGCAGCGA TGGACAGCAA GTTCTGGGGC GCCTACCGCA TCGCCCGCGC GATCGATATC
GCGCCCGGCG GCTCGCTGAC GTTCGTGTCG GGCTACCTGA GCGTGCGGCC GAGCGCGTCG
TCGGTGCTGC AAGGCGCGAT CAACGCGGCG CTCGAGGCCC TCGCCCGCGG GCTGGCGCTC
GAGCTGGCGC CGGTTCGCGT GAACACCGTG TCGCCGGGCC TGATCGCGAC GCCGCTGTGG
GACAAGCTCG CGCCCGACGC ACGTGACGCG ATGTACGCCG GCGCCGCCCA GCGGCTTCCC
GCACGCAGGG TCGGCCAACC GGAGGATGTC GCGAATGCGA TCCTGTATCT GGCGGCAACG
CCCTATGCAA CCGGTTCGAC GGTACTGATC GACGGCGGCG GCGCGATTGC GTGA
|
|---|
| Protein sequence | MDDLLHGKTV LVVGGSSGIG AATAAAFARR GARVTIASRD PRRFDIDALP GAHVRTETLD
ITDTADVDAF CARAGRFDHV VISAAKTATG AVRALPLADA QAAMDSKFWG AYRIARAIDI
APGGSLTFVS GYLSVRPSAS SVLQGAINAA LEALARGLAL ELAPVRVNTV SPGLIATPLW
DKLAPDARDA MYAGAAQRLP ARRVGQPEDV ANAILYLAAT PYATGSTVLI DGGGAIA
|
|---|
| |