Gene Saro_3460 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSaro_3460 
Symbol 
ID5077609 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameNovosphingobium aromaticivorans DSM 12444 
KingdomBacteria 
Replicon accessionNC_009427 
Strand
Start bp62816 
End bp63553 
Gene Length738 bp 
Protein Length245 aa 
Translation table11 
GC content66% 
IMG OID640481184 
Productshort-chain dehydrogenase/reductase SDR 
Protein accessionYP_001165846 
Protein GI146275686 
COG category[I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only 
COG ID[COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones34 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGGCGTGC TGGACGGCAA GGTCACCTTT GTCACTGGCG GCGCGTCGGG CCTCGGAGAG 
GCCATCGCGC GGGCCTTTGC GGCAGAGGGC GCATCGGTTG TCGTCGCCGA TATCGATGTG
GCCGGCGGCG AGACGCTGGC GGCGCAAATC GGCGCACAGT TCGTTCCGCT CGACGTGACG
CAGGAGGGAT CGTGGGCCGA AGCCGTCGCT CCGTTCGAAC GGATCGACGT GCTGGTCAAC
AACGCCGGGA TCACCACGCT CGGCTCGGTC GAGGAAATCA CGCTCGACCA GTTCCGGCAC
GAGCTGGACA TAGACGTGCT GGGCGTGTTC ATGGGCATCC AGGCCACCCT GCCCCGGATG
AAGACGCACG GCGGGTCGAT CATCAACATG TCCTCGCTCT CGGGCGTGAA GGCATCGGCC
AACCTCGTCG CCTACAATGC GGCGAAGGCG GCGGTGACGC TGATGACGAA GTCCTGCGCG
CTGCACTTTG CCGACAAGGG CTATGGCATC CGTTGCAACT CGATCCACCC CGGCGCGATC
CACACGCCGA TCATCGACAA GGTGCTGGCC CAGTCCGACG ATCCTGACGC GCTCTACCGC
AGCTTCGTCG ATGTCCATCC GGTGAAGCGG CTGGGCAAGC CGGAGGAGAT CGCGGCGATC
GCGGTCTATC TCGCCAGCGA TGCCAGCGCC TTTGCAACGG GCGCGGAGTT CCGCGTGGAC
GGGGGCGCGT CCATATGA
 
Protein sequence
MGVLDGKVTF VTGGASGLGE AIARAFAAEG ASVVVADIDV AGGETLAAQI GAQFVPLDVT 
QEGSWAEAVA PFERIDVLVN NAGITTLGSV EEITLDQFRH ELDIDVLGVF MGIQATLPRM
KTHGGSIINM SSLSGVKASA NLVAYNAAKA AVTLMTKSCA LHFADKGYGI RCNSIHPGAI
HTPIIDKVLA QSDDPDALYR SFVDVHPVKR LGKPEEIAAI AVYLASDASA FATGAEFRVD
GGASI