More than 300 homologs were found in PanDaTox collection
for query gene Avi_7590 on replicon NC_011981
Organism: Agrobacterium vitis S4



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_011981  Avi_7590  ABC transporter substrate binding protein (sugar)  100 
 
 
447 aa  919    Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_011988  Avi_5331  ABC transporter substrate binding protein (sugar)  35.12 
 
 
431 aa  295  1e-78  Agrobacterium vitis S4  Bacteria  normal  0.998389  n/a   
 
 
-
 
NC_009429  Rsph17025_3553  hypothetical protein  35.66 
 
 
427 aa  290  3e-77  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  normal 
 
 
-
 
NC_009667  Oant_0637  extracellular solute-binding protein  36.1 
 
 
425 aa  283  4.0000000000000003e-75  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  n/a   
 
 
-
 
NC_011004  Rpal_0129  extracellular solute-binding protein family 1  37.24 
 
 
426 aa  233  4.0000000000000004e-60  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.57996  n/a   
 
 
-
 
NC_007778  RPB_0174  extracellular solute-binding protein  36.87 
 
 
426 aa  220  5e-56  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.396862  normal 
 
 
-
 
NC_007958  RPD_3151  extracellular solute-binding protein  33.25 
 
 
426 aa  218  1e-55  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal  0.345086 
 
 
-
 
NC_009667  Oant_1666  extracellular solute-binding protein  33.17 
 
 
421 aa  214  1.9999999999999998e-54  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  n/a   
 
 
-
 
NC_004311  BRA1180  sugar ABC transporter, periplasmic sugar-binding protein, putative  32.85 
 
 
421 aa  209  7e-53  Brucella suis 1330  Bacteria  normal  0.409061  n/a   
 
 
-
 
NC_011369  Rleg2_1773  extracellular solute-binding protein family 1  34.18 
 
 
421 aa  204  2e-51  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal  0.0165592 
 
 
-
 
NC_007644  Moth_1484  extracellular solute-binding protein  29.66 
 
 
444 aa  148  2.0000000000000003e-34  Moorella thermoacetica ATCC 39073  Bacteria  unclonable  0.00000000000980441  normal 
 
 
-
 
NC_009921  Franean1_3944  extracellular solute-binding protein  26.98 
 
 
464 aa  141  3e-32  Frankia sp. EAN1pec  Bacteria  normal  0.920276  normal  0.0416082 
 
 
-
 
NC_007777  Francci3_2834  extracellular solute-binding protein  28.46 
 
 
459 aa  136  6.0000000000000005e-31  Frankia sp. CcI3  Bacteria  normal  0.873121  normal 
 
 
-
 
NC_009939  Dgeo_2919  ABC-type sugar transport system, periplasmic component  29.97 
 
 
407 aa  136  8e-31  Deinococcus geothermalis DSM 11300  Bacteria  n/a    n/a   
 
 
-
 
NC_010003  Pmob_0289  extracellular solute-binding protein  27.01 
 
 
437 aa  132  1.0000000000000001e-29  Petrotoga mobilis SJ95  Bacteria  unclonable  0.00000019091  n/a   
 
 
-
 
NC_010003  Pmob_0721  extracellular solute-binding protein  26.98 
 
 
437 aa  129  8.000000000000001e-29  Petrotoga mobilis SJ95  Bacteria  normal  0.540981  n/a   
 
 
-
 
NC_007777  Francci3_2252  extracellular solute-binding protein  30.52 
 
 
469 aa  119  9.999999999999999e-26  Frankia sp. CcI3  Bacteria  hitchhiker  0.00844632  hitchhiker  0.0063434 
 
 
-
 
NC_010483  TRQ2_1696  extracellular solute-binding protein  26.59 
 
 
436 aa  116  6.9999999999999995e-25  Thermotoga sp. RQ2  Bacteria  hitchhiker  0.00506774  n/a   
 
 
-
 
NC_009921  Franean1_1895  extracellular solute-binding protein  29.55 
 
 
445 aa  115  1.0000000000000001e-24  Frankia sp. EAN1pec  Bacteria  normal  0.854658  normal 
 
 
-
 
NC_013739  Cwoe_3957  extracellular solute-binding protein family 1  27.43 
 
 
432 aa  113  8.000000000000001e-24  Conexibacter woesei DSM 14684  Bacteria  normal  normal 
 
 
-
 
NC_013205  Aaci_0075  extracellular solute-binding protein family 1  26.78 
 
 
441 aa  112  9e-24  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  normal  n/a   
 
 
-
 
NC_014212  Mesil_0955  extracellular solute-binding protein family 1  28.43 
 
 
437 aa  109  8.000000000000001e-23  Meiothermus silvanus DSM 9946  Bacteria  normal  normal  0.152307 
 
 
-
 
NC_013171  Apre_0061  extracellular solute-binding protein family 1  26.69 
 
 
462 aa  103  6e-21  Anaerococcus prevotii DSM 20548  Bacteria  normal  n/a   
 
 
-
 
NC_013946  Mrub_0322  extracellular solute-binding protein family 1  23.06 
 
 
435 aa  95.1  2e-18  Meiothermus ruber DSM 1279  Bacteria  normal  normal 
 
 
-
 
NC_012917  PC1_0631  extracellular solute-binding protein family 1  28.46 
 
 
435 aa  94  5e-18  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  n/a   
 
 
-
 
NC_013421  Pecwa_0845  extracellular solute-binding protein family 1  26.76 
 
 
435 aa  94  5e-18  Pectobacterium wasabiae WPP163  Bacteria  normal  n/a   
 
 
-
 
NC_011894  Mnod_6751  extracellular solute-binding protein family 1  26.36 
 
 
441 aa  93.6  7e-18  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_014213  Mesil_3422  ABC-type sugar transport systems permease component  27.25 
 
 
410 aa  92.8  1e-17  Meiothermus silvanus DSM 9946  Bacteria  normal  normal 
 
 
-
 
NC_014213  Mesil_3226  Transcriptional regulator  27.25 
 
 
410 aa  92.8  1e-17  Meiothermus silvanus DSM 9946  Bacteria  normal  0.101031  normal 
 
 
-
 
NC_009616  Tmel_0753  extracellular solute-binding protein  25.45 
 
 
437 aa  92.8  1e-17  Thermosipho melanesiensis BI429  Bacteria  normal  n/a   
 
 
-
 
NC_013205  Aaci_0770  extracellular solute-binding protein family 1  23.73 
 
 
444 aa  91.7  2e-17  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  normal  n/a   
 
 
-
 
NC_007777  Francci3_0464  extracellular solute-binding protein  27.08 
 
 
452 aa  91.7  2e-17  Frankia sp. CcI3  Bacteria  normal  0.364922  normal  0.192606 
 
 
-
 
NC_011831  Cagg_2195  extracellular solute-binding protein family 1  26.35 
 
 
450 aa  90.9  4e-17  Chloroflexus aggregans DSM 9485  Bacteria  normal  normal 
 
 
-
 
NC_009921  Franean1_6153  extracellular solute-binding protein  27.96 
 
 
451 aa  90.1  7e-17  Frankia sp. EAN1pec  Bacteria  normal  normal  0.916687 
 
 
-
 
NC_013131  Caci_4697  extracellular solute-binding protein family 1  24.23 
 
 
442 aa  90.1  7e-17  Catenulispora acidiphila DSM 44928  Bacteria  hitchhiker  0.00367387  normal 
 
 
-
 
NC_013131  Caci_7906  extracellular solute-binding protein family 1  27.38 
 
 
420 aa  89.4  1e-16  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.819994  normal 
 
 
-
 
NC_011769  DvMF_0656  extracellular solute-binding protein family 1  24.81 
 
 
431 aa  88.6  2e-16  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal  0.31335 
 
 
-
 
NC_012912  Dd1591_3386  extracellular solute-binding protein family 1  29.21 
 
 
440 aa  88.6  2e-16  Dickeya zeae Ech1591  Bacteria  normal  n/a   
 
 
-
 
NC_008751  Dvul_0224  extracellular solute-binding protein  24.86 
 
 
431 aa  89  2e-16  Desulfovibrio vulgaris DP4  Bacteria  normal  normal 
 
 
-
 
NC_014158  Tpau_3527  extracellular solute-binding protein family 1  27.43 
 
 
436 aa  88.6  2e-16  Tsukamurella paurometabola DSM 20162  Bacteria  normal  n/a   
 
 
-
 
NC_011725  BCB4264_A0606  putative glycerol-3-phosphate ABC transporter, glycerol-3-phosphate-binding protein  24.93 
 
 
458 aa  87.8  4e-16  Bacillus cereus B4264  Bacteria  normal  n/a   
 
 
-
 
NC_011772  BCG9842_B4733  putative glycerol-3-phosphate ABC transporter, glycerol-3-phosphate-binding protein  25.14 
 
 
458 aa  87.4  4e-16  Bacillus cereus G9842  Bacteria  normal  normal 
 
 
-
 
NC_010184  BcerKBAB4_0483  extracellular solute-binding protein  24.24 
 
 
458 aa  87  6e-16  Bacillus weihenstephanensis KBAB4  Bacteria  normal  n/a   
 
 
-
 
NC_012793  GWCH70_1392  extracellular solute-binding protein family 1  23.96 
 
 
445 aa  86.7  8e-16  Geobacillus sp. WCH70  Bacteria  normal  n/a   
 
 
-
 
NC_011658  BCAH187_A0700  putative glycerol-3-phosphate ABC transporter, glycerol-3-phosphate-binding protein  24.65 
 
 
458 aa  86.3  9e-16  Bacillus cereus AH187  Bacteria  normal  n/a   
 
 
-
 
NC_003909  BCE_0632  glycerol-3-phosphate ABC transporter, glycerol-3-phosphate-binding protein, putative  24.65 
 
 
458 aa  85.9  0.000000000000001  Bacillus cereus ATCC 10987  Bacteria  normal  n/a   
 
 
-
 
NC_005945  BAS0538  glycerol-3-phosphate ABC transporter glycerol-3-phosphate-binding protein  24.65 
 
 
458 aa  85.9  0.000000000000001  Bacillus anthracis str. Sterne  Bacteria  normal  0.406699  n/a   
 
 
-
 
NC_005957  BT9727_0480  glycerol-3-phosphate ABC transporter, glycerol-3-phosphate-binding protein  24.65 
 
 
458 aa  85.9  0.000000000000001  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  n/a   
 
 
-
 
NC_007530  GBAA_0569  glycerol-3-phosphate ABC transporter glycerol-3-phosphate-binding protein  24.65 
 
 
458 aa  85.9  0.000000000000001  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  n/a   
 
 
-
 
NC_012880  Dd703_3270  extracellular solute-binding protein family 1  27.44 
 
 
435 aa  86.3  0.000000000000001  Dickeya dadantii Ech703  Bacteria  normal  0.543416  n/a   
 
 
-
 
NC_011773  BCAH820_0625  putative glycerol-3-phosphate ABC transporter, glycerol-3-phosphate-binding protein  24.65 
 
 
458 aa  85.9  0.000000000000001  Bacillus cereus AH820  Bacteria  n/a    normal 
 
 
-
 
NC_010511  M446_6664  extracellular solute-binding protein  27.41 
 
 
452 aa  85.9  0.000000000000001  Methylobacterium sp. 4-46  Bacteria  normal  normal  0.0689323 
 
 
-
 
NC_006274  BCZK0482  glycerol-3-phosphate ABC transporter, glycerol-3-phosphate-binding protein  24.65 
 
 
458 aa  85.5  0.000000000000002  Bacillus cereus E33L  Bacteria  normal  n/a   
 
 
-
 
NC_007413  Ava_4289  extracellular solute-binding protein  22.78 
 
 
466 aa  84.7  0.000000000000003  Anabaena variabilis ATCC 29413  Bacteria  normal  normal 
 
 
-
 
NC_014212  Mesil_0475  extracellular solute-binding protein family 1  25.48 
 
 
397 aa  84.7  0.000000000000003  Meiothermus silvanus DSM 9946  Bacteria  normal  normal 
 
 
-
 
NC_013526  Tter_2294  extracellular solute-binding protein family 1  24.59 
 
 
448 aa  84  0.000000000000004  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  n/a   
 
 
-
 
NC_008262  CPR_0476  ABC transporter, substrate-binding protein  24.28 
 
 
427 aa  84.3  0.000000000000004  Clostridium perfringens SM101  Bacteria  normal  n/a   
 
 
-
 
NC_008528  OEOE_1459  ABC-type sugar transport system, periplasmic component  21.95 
 
 
457 aa  84  0.000000000000005  Oenococcus oeni PSU-1  Bacteria  normal  n/a   
 
 
-
 
NC_013946  Mrub_0791  extracellular solute-binding protein family 1  24.23 
 
 
399 aa  83.6  0.000000000000006  Meiothermus ruber DSM 1279  Bacteria  normal  normal  0.418273 
 
 
-
 
NC_013595  Sros_3538  Maltose-binding periplasmic protein/domains- like protein  24.65 
 
 
406 aa  83.6  0.000000000000007  Streptosporangium roseum DSM 43021  Bacteria  normal  0.385239  normal 
 
 
-
 
NC_009668  Oant_3895  extracellular solute-binding protein  23.97 
 
 
411 aa  83.2  0.000000000000008  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  n/a   
 
 
-
 
NC_010508  Bcenmc03_0374  glycerol-3-phosphate transporter periplasmic binding protein  29.2 
 
 
444 aa  82.8  0.00000000000001  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal 
 
 
-
 
NC_008060  Bcen_2712  glycerol-3-phosphate transporter periplasmic binding protein  29.2 
 
 
443 aa  82.8  0.00000000000001  Burkholderia cenocepacia AU 1054  Bacteria  normal  0.290307  n/a   
 
 
-
 
NC_008542  Bcen2424_0395  glycerol-3-phosphate transporter periplasmic binding protein  29.2 
 
 
443 aa  82.8  0.00000000000001  Burkholderia cenocepacia HI2424  Bacteria  normal  0.954301  n/a   
 
 
-
 
NC_004311  BRA0748  sugar ABC transporter, periplasmic sugar-binding protein, putative  23.97 
 
 
411 aa  82  0.00000000000002  Brucella suis 1330  Bacteria  normal  0.537127  n/a   
 
 
-
 
NC_009523  RoseRS_4566  extracellular solute-binding protein  24.93 
 
 
453 aa  81.6  0.00000000000002  Roseiflexus sp. RS-1  Bacteria  normal  normal 
 
 
-
 
NC_014212  Mesil_0476  extracellular solute-binding protein family 1  24.75 
 
 
401 aa  82.4  0.00000000000002  Meiothermus silvanus DSM 9946  Bacteria  normal  normal 
 
 
-
 
NC_007413  Ava_1229  extracellular solute-binding protein  22.57 
 
 
461 aa  81.3  0.00000000000003  Anabaena variabilis ATCC 29413  Bacteria  normal  0.0257979  normal  0.868479 
 
 
-
 
NC_006348  BMA2744  glycerol-3-phosphate transporter periplasmic binding protein  28.33 
 
 
441 aa  80.5  0.00000000000005  Burkholderia mallei ATCC 23344  Bacteria  normal  n/a   
 
 
-
 
NC_007434  BURPS1710b_3726  glycerol-3-phosphate transporter periplasmic binding protein  28.33 
 
 
441 aa  80.5  0.00000000000005  Burkholderia pseudomallei 1710b  Bacteria  normal  0.268589  n/a   
 
 
-
 
NC_008785  BMASAVP1_A3209  glycerol-3-phosphate transporter periplasmic binding protein  28.33 
 
 
441 aa  80.5  0.00000000000005  Burkholderia mallei SAVP1  Bacteria  normal  0.0248662  n/a   
 
 
-
 
NC_008836  BMA10229_A1760  glycerol-3-phosphate transporter periplasmic binding protein  28.33 
 
 
441 aa  80.5  0.00000000000005  Burkholderia mallei NCTC 10229  Bacteria  normal  n/a   
 
 
-
 
NC_009080  BMA10247_2794  glycerol-3-phosphate transporter periplasmic binding protein  28.33 
 
 
441 aa  80.5  0.00000000000005  Burkholderia mallei NCTC 10247  Bacteria  normal  n/a   
 
 
-
 
NC_013131  Caci_2418  extracellular solute-binding protein family 1  27.58 
 
 
447 aa  80.9  0.00000000000005  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_009074  BURPS668_3697  glycerol-3-phosphate transporter periplasmic binding protein  28.33 
 
 
441 aa  80.5  0.00000000000006  Burkholderia pseudomallei 668  Bacteria  normal  n/a   
 
 
-
 
NC_007651  BTH_I3021  glycerol-3-phosphate transporter periplasmic binding protein  28.33 
 
 
441 aa  80.1  0.00000000000007  Burkholderia thailandensis E264  Bacteria  normal  n/a   
 
 
-
 
NC_013202  Hmuk_0332  extracellular solute-binding protein family 1  26.24 
 
 
468 aa  80.1  0.00000000000008  Halomicrobium mukohataei DSM 12286  Archaea  normal  normal 
 
 
-
 
NC_007510  Bcep18194_A3492  glycerol-3-phosphate transporter periplasmic binding protein  28.8 
 
 
444 aa  79.7  0.00000000000009  Burkholderia sp. 383  Bacteria  normal  normal 
 
 
-
 
NC_013411  GYMC61_1727  extracellular solute-binding protein family 1  26.71 
 
 
422 aa  79.3  0.0000000000001  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_013946  Mrub_2730  extracellular solute-binding protein family 1  24.24 
 
 
399 aa  79.3  0.0000000000001  Meiothermus ruber DSM 1279  Bacteria  normal  normal 
 
 
-
 
NC_009504  BOV_A0698  putative sugar ABC transporter, periplasmic sugar-binding protein  24.69 
 
 
366 aa  79  0.0000000000001  Brucella ovis ATCC 25840  Bacteria  normal  0.436581  n/a   
 
 
-
 
NC_013411  GYMC61_2845  extracellular solute-binding protein family 1  24.41 
 
 
439 aa  79.3  0.0000000000001  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_009620  Smed_3710  extracellular solute-binding protein  25.36 
 
 
431 aa  79.3  0.0000000000001  Sinorhizobium medicae WSM419  Bacteria  decreased coverage  0.00279907  normal 
 
 
-
 
NC_012669  Bcav_3988  extracellular solute-binding protein family 1  23.5 
 
 
422 aa  78.6  0.0000000000002  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal 
 
 
-
 
NC_013205  Aaci_2873  extracellular solute-binding protein family 1  26.95 
 
 
425 aa  78.6  0.0000000000002  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  normal  n/a   
 
 
-
 
NC_011884  Cyan7425_3276  extracellular solute-binding protein family 1  21.28 
 
 
420 aa  78.2  0.0000000000003  Cyanothece sp. PCC 7425  Bacteria  normal  0.147153  normal  0.336546 
 
 
-
 
NC_013205  Aaci_2049  extracellular solute-binding protein family 1  25.93 
 
 
438 aa  78.2  0.0000000000003  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  normal  0.266449  n/a   
 
 
-
 
NC_009767  Rcas_0113  extracellular solute-binding protein  25.14 
 
 
455 aa  77.4  0.0000000000004  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.270734  normal 
 
 
-
 
NC_012669  Bcav_1508  extracellular solute-binding protein family 1  26.79 
 
 
451 aa  77.8  0.0000000000004  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.55774  normal 
 
 
-
 
NC_013131  Caci_3703  extracellular solute-binding protein family 1  28.88 
 
 
466 aa  77.4  0.0000000000005  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.0104923  normal 
 
 
-
 
NC_009076  BURPS1106A_3755  glycerol-3-phosphate transporter periplasmic binding protein  27.99 
 
 
441 aa  77  0.0000000000007  Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_009050  Rsph17029_4022  extracellular solute-binding protein  24.37 
 
 
431 aa  76.6  0.0000000000009  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  normal 
 
 
-
 
NC_010551  BamMC406_0323  glycerol-3-phosphate transporter periplasmic binding protein  27.6 
 
 
444 aa  76.3  0.000000000001  Burkholderia ambifaria MC40-6  Bacteria  normal  normal  0.839712 
 
 
-
 
NC_007494  RSP_3290  ABC glycerol-3-phosphate transporter, periplasmic binding protein, UgpB  24.37 
 
 
431 aa  76.3  0.000000000001  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  n/a   
 
 
-
 
NC_010084  Bmul_0298  glycerol-3-phosphate transporter periplasmic binding protein  28 
 
 
444 aa  76.3  0.000000000001  Burkholderia multivorans ATCC 17616  Bacteria  normal  normal 
 
 
-
 
NC_008390  Bamb_0314  glycerol-3-phosphate transporter periplasmic binding protein  28 
 
 
444 aa  75.9  0.000000000001  Burkholderia ambifaria AMMD  Bacteria  normal  n/a   
 
 
-
 
NC_009429  Rsph17025_3285  hypothetical protein  23.9 
 
 
431 aa  76.3  0.000000000001  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  0.339711  normal 
 
 
-
 
NC_009921  Franean1_0630  extracellular solute-binding protein  26.33 
 
 
483 aa  75.9  0.000000000001  Frankia sp. EAN1pec  Bacteria  normal  normal  0.679852 
 
 
-
 
NC_004311  BRA0655  glycerol-3-phosphate ABC transporter, periplasmic glycerol-3-phosphate-binding protein  26.3 
 
 
433 aa  75.5  0.000000000002  Brucella suis 1330  Bacteria  normal  0.454035  n/a   
 
 
-
 
NC_008010  Dgeo_2662  extracellular solute-binding protein  23.87 
 
 
433 aa  75.5  0.000000000002  Deinococcus geothermalis DSM 11300  Bacteria  normal  0.377519  n/a   
 
 
-
 
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