| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_3710 |
|---|
| Symbol | |
|---|
| ID | 5318430 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sinorhizobium medicae WSM419 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009620 |
|---|
| Strand | - |
|---|
| Start bp | 151577 |
|---|
| End bp | 152872 |
|---|
| Gene Length | 1296 bp |
|---|
| Protein Length | 431 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 640775523 |
|---|
| Product | extracellular solute-binding protein |
|---|
| Protein accession | YP_001312456 |
|---|
| Protein GI | 150375860 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG1653] ABC-type sugar transport system, periplasmic component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 3 |
|---|
| Plasmid unclonability p-value | 0.00279907 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 26 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGAGTGA TTTCCATTTC CACGACAATG GCCGTCGTCG GCTTCGCTGT TCAGGCGCAG
GCCGCCACCG AACTGCAGTG GTGGCATGCA ATGACGGGCG CCAACAACGA AATGATCGAG
GAGCTCACCA AGGAGTTCAA CGCGAGCCAG AGCACCTACA AAGTGGTGCC TGTCTTCAAG
GGCACCTATC CCGAAACTCT GAATGCGGGG ATTGCGGCCT TCCGCTCGAA GCAGCCGCCG
GCGATCATTC AGGTATTCGA TGCCGGCAGC GGCACGATGA TGGCGGCCGA GGGCGCGATC
GTGCCGGCCG CCGAGATCCT CCAGAAGGGC GGCTTCACCT TCGATAAATC GCAGTATCTT
CCCGGGATCG TTGCCTATTA TTCGAAGCCG GATGGAACGA TGCTGTCCTT TCCGTATAAC
TCTTCCTCGC CGATTCTTTA CTACAATAAG GACGCTTTTC AGAAAGCAGG CTTGAACGTA
GACAATCCGC CGAAGACATG GCCGGAAGTC TTCGAAGCCG CGAAGAAGAT CAAGACGAGC
GGTGCGGCAC CTTGCGGGAT GACGTCGACC TGGTTGACCT GGATCCAGAC GGAGAACTTC
GCCGCCTGGA ACAATATGCC CTACGGAACC AATGAAAACG GGCTCGGCGG CACCGATGTG
CAGCTGAAGA TCAACGCGCC CCTTTACGTG GAGCATTTCC AGGCCATAGC GAACCTCGCC
AAGGACGGCG CCTTTCGTTA TGGGGGGCGC ACCTCCGAGG CAAAGCAGCT CTTTACATCA
GGCGAATGTG CCATCCTGAC CGAATCCTCG GGCGGTCTCG GCGACATCGC CAAGAGCGGC
GTCAACTACG GGATCGGTCA ACTGCCCTAT TACGAGGGTC ACGGTCCGCA GAACACGATC
CCCGGTGGAG CGAGCCTCTG GGTGTTCGCC GGCAAGTCCG ACGAGGAATA CAAGGGCATT
GCCGAGTTCT TCAACTTCCT TTCACAGACA GAAATCCAAG CCAAGCTGCA TCAGGTCTCG
GGTTATATGC CGGTCACGAT GGCTGCCTAC GAGGAAACCA AGAAGTCCGG CTTCTACGAG
AAGAACCCCG GGCGTGAGAC GCCACTCCTG CAGATGATGG GGAAGGCGCC GACCGAAAAC
TCGAAGGGTG TCCGGCTGGT CAACCTGCCG CAGGTTCGGG ACATCCTCAA CGAGGAGTTC
GAAGCGATGC TGTCGGGACA ACAGGATGCC AAGACGGCGC TCGATAAAGC GGTCGAGCGG
GGCGACGCCG CGATCGCAGC AGCAATCAGC AATTGA
|
|---|
| Protein sequence | MRVISISTTM AVVGFAVQAQ AATELQWWHA MTGANNEMIE ELTKEFNASQ STYKVVPVFK
GTYPETLNAG IAAFRSKQPP AIIQVFDAGS GTMMAAEGAI VPAAEILQKG GFTFDKSQYL
PGIVAYYSKP DGTMLSFPYN SSSPILYYNK DAFQKAGLNV DNPPKTWPEV FEAAKKIKTS
GAAPCGMTST WLTWIQTENF AAWNNMPYGT NENGLGGTDV QLKINAPLYV EHFQAIANLA
KDGAFRYGGR TSEAKQLFTS GECAILTESS GGLGDIAKSG VNYGIGQLPY YEGHGPQNTI
PGGASLWVFA GKSDEEYKGI AEFFNFLSQT EIQAKLHQVS GYMPVTMAAY EETKKSGFYE
KNPGRETPLL QMMGKAPTEN SKGVRLVNLP QVRDILNEEF EAMLSGQQDA KTALDKAVER
GDAAIAAAIS N
|
|---|
| |