136 decreased-coverage genes were found for selected organism/s



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Locus tag

Gene type

Replicon accession

From

To

Strand

Gene Length

Product

Protein accession

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Organism name

Kingdom

Coverage Plot

PanDaTox homologs

Experimental validation
Sden_0108  CDS  NC_007954  119777  120307  531  hypothetical protein  YP_561128  decreased coverage  3.316e-06  n/a    Shewanella denitrificans OS217  Bacteria 
 
 
-
 
Sden_0109  CDS  NC_007954  120323  121000  678  response regulator receiver  YP_561129  decreased coverage  6.62688e-08  n/a    Shewanella denitrificans OS217  Bacteria 
 
 
-
 
Sden_0120  CDS  NC_007954  130359  131270  912  type II secretion system protein C  YP_561140  decreased coverage  7.35781e-05  n/a    Shewanella denitrificans OS217  Bacteria 
 
 
-
 
Sden_0230  CDS  NC_007954  256639  257256  618  DNA-binding transcriptional repressor FabR  YP_561250  decreased coverage  2.20471e-10  n/a    Shewanella denitrificans OS217  Bacteria 
 
 
-
 
Sden_0231  CDS  NC_007954  257337  258434  1098  tRNA (uracil-5-)-methyltransferase  YP_561251  decreased coverage  3.44298e-09  n/a    Shewanella denitrificans OS217  Bacteria 
 
 
-
 
Sden_0261  CDS  NC_007954  300156  300671  516  shikimate kinase I  YP_561280  decreased coverage  1.54257e-07  n/a    Shewanella denitrificans OS217  Bacteria 
 
 
-
 
Sden_0273  CDS  NC_007954  309227  311038  1812  LppC putative lipoprotein  YP_561292  decreased coverage  5.39466e-08  n/a    Shewanella denitrificans OS217  Bacteria 
 
 
-
 
Sden_0323  CDS  NC_007954  362232  362825  594  nucleoid occlusion protein  YP_561341  decreased coverage  5.49659e-07  n/a    Shewanella denitrificans OS217  Bacteria 
 
 
-
 
Sden_0340  CDS  NC_007954  380353  381705  1353  aromatic hydrocarbon degradation membrane protein  YP_561358  decreased coverage  3.12339e-09  n/a    Shewanella denitrificans OS217  Bacteria 
 
 
-
 
Sden_0372  CDS  NC_007954  425545  426099  555  hypothetical protein  YP_561390  decreased coverage  1.70684e-09  n/a    Shewanella denitrificans OS217  Bacteria 
 
 
-
 
Sden_0419  CDS  NC_007954  491176  491523  348  hypothetical protein  YP_561435  decreased coverage  3.88405e-06  n/a    Shewanella denitrificans OS217  Bacteria 
 
 
-
 
Sden_0445  CDS  NC_007954  515431  516399  969  dihydrouridine synthase TIM-barrel protein nifR3  YP_561460  decreased coverage  1.52787e-08  n/a    Shewanella denitrificans OS217  Bacteria 
 
 
-
 
Sden_0498  CDS  NC_007954  568521  568994  474  hypothetical protein  YP_561513  decreased coverage  2.8229e-08  n/a    Shewanella denitrificans OS217  Bacteria 
 
 
-
 
Sden_0506  CDS  NC_007954  575953  576381  429  50S ribosomal protein L13  YP_561521  decreased coverage  1.58843e-11  n/a    Shewanella denitrificans OS217  Bacteria 
 
 
-
 
Sden_0526  CDS  NC_007954  595050  595409  360  hypothetical protein  YP_561541  decreased coverage  2.23061e-11  n/a    Shewanella denitrificans OS217  Bacteria 
 
 
-
 
Sden_0536  CDS  NC_007954  604053  606959  2907  ATP-dependent helicase HepA  YP_561551  decreased coverage  0.00420482  n/a    Shewanella denitrificans OS217  Bacteria 
 
 
-
 
Sden_0566  CDS  NC_007954  641213  642133  921  hypothetical protein  YP_561579  decreased coverage  2.70082e-05  n/a    Shewanella denitrificans OS217  Bacteria 
 
 
-
 
Sden_0582  CDS  NC_007954  661252  663381  2130  TonB-dependent receptor, plug  YP_561595  decreased coverage  4.70025e-07  n/a    Shewanella denitrificans OS217  Bacteria 
 
 
-
 
Sden_0583  CDS  NC_007954  663507  663899  393  ParB-like nuclease  YP_561596  decreased coverage  1.49246e-07  n/a    Shewanella denitrificans OS217  Bacteria 
 
 
-
 
Sden_0701  CDS  NC_007954  808579  809538  960  hypothetical protein  YP_561714  decreased coverage  1.23312e-08  n/a    Shewanella denitrificans OS217  Bacteria 
 
 
-
 
Sden_0707  CDS  NC_007954  815833  816747  915  ErfK/YbiS/YcfS/YnhG  YP_561720  decreased coverage  4.09779e-10  n/a    Shewanella denitrificans OS217  Bacteria 
 
 
-
 
Sden_0739  CDS  NC_007954  858689  859333  645  glutathione S-transferase-like protein  YP_561752  decreased coverage  0.000125702  n/a    Shewanella denitrificans OS217  Bacteria 
 
 
-
 
Sden_0740  CDS  NC_007954  859449  859949  501  hypothetical protein  YP_561753  decreased coverage  0.000203019  n/a    Shewanella denitrificans OS217  Bacteria 
 
 
-
 
Sden_0748  CDS  NC_007954  869865  870593  729  thiol:disulfide interchange protein DsbC  YP_561761  decreased coverage  2.86403e-10  n/a    Shewanella denitrificans OS217  Bacteria 
 
 
-
 
Sden_0827  CDS  NC_007954  948369  949121  753  short chain dehydrogenase  YP_561839  decreased coverage  3.71771e-08  n/a    Shewanella denitrificans OS217  Bacteria 
 
 
-
 
Sden_0852  CDS  NC_007954  975390  976283  894  rare lipoprotein A  YP_561863  decreased coverage  5.69682e-10  n/a    Shewanella denitrificans OS217  Bacteria 
 
 
-
 
Sden_0872  CDS  NC_007954  996624  997736  1113  permease YjgP/YjgQ  YP_561883  decreased coverage  5.06114e-06  n/a    Shewanella denitrificans OS217  Bacteria 
 
 
-
 
Sden_0910  CDS  NC_007954  1037517  1038794  1278  4-aminobutyrate aminotransferase  YP_561921  decreased coverage  1.69324e-05  n/a    Shewanella denitrificans OS217  Bacteria 
 
 
-
 
Sden_0919  CDS  NC_007954  1049263  1050513  1251  glutamyl-tRNA reductase  YP_561930  decreased coverage  5.05435e-08  n/a    Shewanella denitrificans OS217  Bacteria 
 
 
-
 
Sden_0954  CDS  NC_007954  1093018  1094373  1356  peptidase S41  YP_561965  decreased coverage  4.32114e-08  n/a    Shewanella denitrificans OS217  Bacteria 
 
 
-
 
Sden_0955  CDS  NC_007954  1094511  1095428  918  phospholipase A1  YP_561966  decreased coverage  2.43291e-08  n/a    Shewanella denitrificans OS217  Bacteria 
 
 
-
 
Sden_0989  CDS  NC_007954  1127946  1128170  225  hypothetical protein  YP_562000  decreased coverage  8.03888e-12  n/a    Shewanella denitrificans OS217  Bacteria 
 
 
-
 
Sden_0990  CDS  NC_007954  1128386  1128856  471  bacterioferritin  YP_562001  decreased coverage  3.9605e-11  n/a    Shewanella denitrificans OS217  Bacteria 
 
 
-
 
Sden_0991  CDS  NC_007954  1128921  1129388  468  bacterioferritin  YP_562002  decreased coverage  3.07533e-11  n/a    Shewanella denitrificans OS217  Bacteria 
 
 
-
 
Sden_0992  CDS  NC_007954  1129560  1130378  819  peptidase M48, Ste24p  YP_562003  decreased coverage  1.66595e-10  n/a    Shewanella denitrificans OS217  Bacteria 
 
 
-
 
Sden_1087  CDS  NC_007954  1245229  1245969  741  hypothetical protein  YP_562098  decreased coverage  3.12385e-10  n/a    Shewanella denitrificans OS217  Bacteria 
 
 
-
 
Sden_1088  CDS  NC_007954  1246071  1246958  888  transposase, IS4  YP_562099  decreased coverage  8.30574e-08  n/a    Shewanella denitrificans OS217  Bacteria 
 
 
-
 
Sden_1122  CDS  NC_007954  1289822  1290790  969  beta-lactamase-like protein  YP_562133  decreased coverage  0.000282936  n/a    Shewanella denitrificans OS217  Bacteria 
 
 
-
 
Sden_1146  CDS  NC_007954  1317229  1318332  1104  3,4-dihydroxy-2-butanone 4-phosphate synthase  YP_562155  decreased coverage  3.72941e-06  n/a    Shewanella denitrificans OS217  Bacteria 
 
 
-
 
Sden_1189  CDS  NC_007954  1381604  1382602  999  auxin efflux carrier  YP_562198  decreased coverage  3.79435e-05  n/a    Shewanella denitrificans OS217  Bacteria 
 
 
-
 
Sden_1203  CDS  NC_007954  1398784  1399719  936  peptidase M23B  YP_562212  decreased coverage  3.04892e-08  n/a    Shewanella denitrificans OS217  Bacteria 
 
 
-
 
Sden_1245  CDS  NC_007954  1454531  1456198  1668  malate synthase  YP_562254  decreased coverage  0.000965788  n/a    Shewanella denitrificans OS217  Bacteria 
 
 
-
 
Sden_1272  CDS  NC_007954  1485406  1486890  1485  putative transglycosylase  YP_562281  decreased coverage  1.29454e-08  n/a    Shewanella denitrificans OS217  Bacteria 
 
 
-
 
Sden_1358  CDS  NC_007954  1578944  1579573  630  OmpA/MotB  YP_562367  decreased coverage  5.45475e-11  n/a    Shewanella denitrificans OS217  Bacteria 
 
 
-
 
Sden_1359  CDS  NC_007954  1579594  1580421  828  MscS mechanosensitive ion channel  YP_562368  decreased coverage  1.24466e-10  n/a    Shewanella denitrificans OS217  Bacteria 
 
 
-
 
Sden_1360  CDS  NC_007954  1580418  1581032  615  antioxidant Tpx  YP_562369  decreased coverage  2.92969e-11  n/a    Shewanella denitrificans OS217  Bacteria 
 
 
-
 
Sden_1401  CDS  NC_007954  1633803  1634936  1134  queuine tRNA-ribosyltransferase  YP_562410  decreased coverage  3.97481e-08  n/a    Shewanella denitrificans OS217  Bacteria 
 
 
-
 
Sden_1402  CDS  NC_007954  1635013  1635288  276  preprotein translocase subunit YajC  YP_562411  decreased coverage  2.29037e-08  n/a    Shewanella denitrificans OS217  Bacteria 
 
 
-
 
Sden_1455  CDS  NC_007954  1691036  1691815  780  RNA methyltransferase TrmH, group 1  YP_562463  decreased coverage  0.000119002  n/a    Shewanella denitrificans OS217  Bacteria 
 
 
-
 
Sden_1465  CDS  NC_007954  1699118  1699927  810  exonuclease III  YP_562473  decreased coverage  0.00148193  n/a    Shewanella denitrificans OS217  Bacteria 
 
 
-
 
Sden_1481  CDS  NC_007954  1712131  1714395  2265  FAD dependent oxidoreductase  YP_562489  decreased coverage  4.25578e-06  n/a    Shewanella denitrificans OS217  Bacteria 
 
 
-
 
Sden_1488  CDS  NC_007954  1726028  1726726  699  sporulation related  YP_562496  decreased coverage  5.0806e-05  n/a    Shewanella denitrificans OS217  Bacteria 
 
 
-
 
Sden_1492  CDS  NC_007954  1730630  1732516  1887  hypothetical protein  YP_562500  decreased coverage  1.65722e-06  n/a    Shewanella denitrificans OS217  Bacteria 
 
 
-
 
Sden_1493  CDS  NC_007954  1732670  1733500  831  methylated-DNA--protein-cysteine methyltransferase  YP_562501  decreased coverage  3.02117e-08  n/a    Shewanella denitrificans OS217  Bacteria 
 
 
-
 
Sden_1555  CDS  NC_007954  1808848  1809699  852  elongation factor Ts  YP_562563  decreased coverage  8.49908e-09  n/a    Shewanella denitrificans OS217  Bacteria 
 
 
-
 
Sden_1561  CDS  NC_007954  1814225  1815595  1371  peptidase M50, putative membrane-associated zinc metallopeptidase  YP_562569  decreased coverage  4.61405e-06  n/a    Shewanella denitrificans OS217  Bacteria 
 
 
-
 
Sden_1564  CDS  NC_007954  1818680  1819702  1023  UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase  YP_562572  decreased coverage  1.28344e-09  n/a    Shewanella denitrificans OS217  Bacteria 
 
 
-
 
Sden_1565  CDS  NC_007954  1819730  1820191  462  (3R)-hydroxymyristoyl-ACP dehydratase  YP_562573  decreased coverage  5.61633e-11  n/a    Shewanella denitrificans OS217  Bacteria 
 
 
-
 
Sden_1586  CDS  NC_007954  1843575  1844708  1134  secretion protein HlyD  YP_562593  decreased coverage  2.31295e-05  n/a    Shewanella denitrificans OS217  Bacteria 
 
 
-
 
Sden_1635  CDS  NC_007954  1898301  1899020  720  fatty acid metabolism regulator  YP_562642  decreased coverage  1.15144e-10  n/a    Shewanella denitrificans OS217  Bacteria 
 
 
-
 
Sden_1641  CDS  NC_007954  1905432  1906655  1224  uracil-xanthine permease  YP_562648  decreased coverage  9.23826e-05  n/a    Shewanella denitrificans OS217  Bacteria 
 
 
-
 
Sden_1655  CDS  NC_007954  1920888  1922639  1752  gamma-glutamyltransferase  YP_562662  decreased coverage  1.29294e-07  n/a    Shewanella denitrificans OS217  Bacteria 
 
 
-
 
Sden_1711  CDS  NC_007954  2014691  2015899  1209  secretion protein HlyD  YP_562718  decreased coverage  7.65458e-08  n/a    Shewanella denitrificans OS217  Bacteria 
 
 
-
 
Sden_1737  CDS  NC_007954  2051771  2052853  1083  secretion protein HlyD  YP_562744  decreased coverage  1.90652e-08  n/a    Shewanella denitrificans OS217  Bacteria 
 
 
-
 
Sden_1742  CDS  NC_007954  2061290  2061790  501  leucine-responsive transcriptional regulator  YP_562749  decreased coverage  1.10042e-09  n/a    Shewanella denitrificans OS217  Bacteria 
 
 
-
 
Sden_1809  CDS  NC_007954  2134906  2135565  660  hypothetical protein  YP_562816  decreased coverage  1.69879e-10  n/a    Shewanella denitrificans OS217  Bacteria 
 
 
-
 
Sden_1810  CDS  NC_007954  2135717  2136619  903  putative DNA-binding transcriptional regulator  YP_562817  decreased coverage  5.33162e-09  n/a    Shewanella denitrificans OS217  Bacteria 
 
 
-
 
Sden_1851  CDS  NC_007954  2176556  2177989  1434  cbb3-type cytochrome c oxidase subunit I  YP_562858  decreased coverage  1.90326e-07  n/a    Shewanella denitrificans OS217  Bacteria 
 
 
-
 
Sden_1852  CDS  NC_007954  2178255  2178773  519  hypothetical protein  YP_562859  decreased coverage  3.09219e-05  n/a    Shewanella denitrificans OS217  Bacteria 
 
 
-
 
Sden_1890  CDS  NC_007954  2219617  2220609  993  methyltransferase, putative  YP_562896  decreased coverage  6.524e-10  n/a    Shewanella denitrificans OS217  Bacteria 
 
 
-
 
Sden_1900  CDS  NC_007954  2230843  2232858  2016  NADH:flavin oxidoreductase/NADH oxidase  YP_562906  decreased coverage  1.27564e-05  n/a    Shewanella denitrificans OS217  Bacteria 
 
 
-
 
Sden_1948  CDS  NC_007954  2306685  2309411  2727  DNA gyrase, A subunit  YP_562954  decreased coverage  5.59672e-06  n/a    Shewanella denitrificans OS217  Bacteria 
 
 
-
 
Sden_1993  CDS  NC_007954  2357715  2358929  1215  aminotransferase AlaT  YP_562999  decreased coverage  3.40923e-09  n/a    Shewanella denitrificans OS217  Bacteria 
 
 
-
 
Sden_1994  CDS  NC_007954  2359039  2359626  588  hypothetical protein  YP_563000  decreased coverage  1.22059e-10  n/a    Shewanella denitrificans OS217  Bacteria 
 
 
-
 
Sden_2009  CDS  NC_007954  2383567  2385942  2376  phosphoenolpyruvate synthase  YP_563015  decreased coverage  1.27973e-06  n/a    Shewanella denitrificans OS217  Bacteria 
 
 
-
 
Sden_2021  CDS  NC_007954  2396508  2397284  777  hydroxyacylglutathione hydrolase  YP_563027  decreased coverage  3.60558e-09  n/a    Shewanella denitrificans OS217  Bacteria 
 
 
-
 
Sden_2022  CDS  NC_007954  2397418  2398974  1557  lytic transglycosylase, catalytic  YP_563028  decreased coverage  2.99101e-08  n/a    Shewanella denitrificans OS217  Bacteria 
 
 
-
 
Sden_2080  CDS  NC_007954  2468490  2469350  861  DNA-binding transcriptional regulator HexR  YP_563085  decreased coverage  0.00496237  n/a    Shewanella denitrificans OS217  Bacteria 
 
 
-
 
Sden_2092  CDS  NC_007954  2486362  2487699  1338  Na+/H+ antiporter NhaC  YP_563097  decreased coverage  1.44395e-05  n/a    Shewanella denitrificans OS217  Bacteria 
 
 
-
 
Sden_2116  CDS  NC_007954  2513621  2514265  645  regulatory protein, TetR  YP_563121  decreased coverage  9.3152e-09  n/a    Shewanella denitrificans OS217  Bacteria 
 
 
-
 
Sden_2117  CDS  NC_007954  2514456  2516294  1839  peptidyl-dipeptidase A  YP_563122  decreased coverage  6.79972e-06  n/a    Shewanella denitrificans OS217  Bacteria 
 
 
-
 
Sden_2188    NC_007954  2594534  2594836  303      decreased coverage  5.31421e-06  n/a    Shewanella denitrificans OS217  Bacteria 
 
 
-
 
Sden_2219  CDS  NC_007954  2634821  2636707  1887  nitrous-oxide reductase  YP_563222  decreased coverage  0.000181055  n/a    Shewanella denitrificans OS217  Bacteria 
 
 
-
 
Sden_2220  CDS  NC_007954  2636787  2638937  2151  FMN-binding  YP_563223  decreased coverage  5.3417e-05  n/a    Shewanella denitrificans OS217  Bacteria 
 
 
-
 
Sden_2310  CDS  NC_007954  2735625  2736065  441  hypothetical protein  YP_563313  decreased coverage  9.10912e-05  n/a    Shewanella denitrificans OS217  Bacteria 
 
 
-
 
Sden_2483  CDS  NC_007954  2960672  2961703  1032  binding-protein-dependent transport systems inner membrane component  YP_563486  decreased coverage  8.84166e-05  n/a    Shewanella denitrificans OS217  Bacteria 
 
 
-
 
Sden_2495  CDS  NC_007954  2975144  2975755  612  ATP-dependent Clp protease proteolytic subunit  YP_563498  decreased coverage  1.98217e-09  n/a    Shewanella denitrificans OS217  Bacteria 
 
 
-
 
Sden_2554  CDS  NC_007954  3053934  3055784  1851  peptidase M61  YP_563556  decreased coverage  6.99097e-08  n/a    Shewanella denitrificans OS217  Bacteria 
 
 
-
 
Sden_2571  CDS  NC_007954  3075452  3077320  1869  1-deoxy-D-xylulose-5-phosphate synthase  YP_563573  decreased coverage  1.55122e-07  n/a    Shewanella denitrificans OS217  Bacteria 
 
 
-
 
Sden_2592  CDS  NC_007954  3102250  3103236  987  fumarylacetoacetate (FAA) hydrolase  YP_563594  decreased coverage  3.18978e-08  n/a    Shewanella denitrificans OS217  Bacteria 
 
 
-
 
Sden_2683  CDS  NC_007954  3214654  3215472  819  pyrroline-5-carboxylate reductase  YP_563685  decreased coverage  1.01037e-05  n/a    Shewanella denitrificans OS217  Bacteria 
 
 
-
 
Sden_2691  CDS  NC_007954  3222511  3223422  912  recombination associated protein  YP_563693  decreased coverage  1.50685e-07  n/a    Shewanella denitrificans OS217  Bacteria 
 
 
-
 
Sden_2700  CDS  NC_007954  3232815  3233702  888  transposase, IS4  YP_563702  decreased coverage  0.00130317  n/a    Shewanella denitrificans OS217  Bacteria 
 
 
-
 
Sden_2706  CDS  NC_007954  3239914  3240813  900  ATPase, BadF/BadG/BcrA/BcrD type  YP_563708  decreased coverage  0.00102346  n/a    Shewanella denitrificans OS217  Bacteria 
 
 
-
 
Sden_2710  CDS  NC_007954  3247613  3248899  1287  NADH dehydrogenase  YP_563712  decreased coverage  2.65247e-09  n/a    Shewanella denitrificans OS217  Bacteria 
 
 
-
 
Sden_2725  CDS  NC_007954  3263601  3265160  1560  integral membrane protein MviN  YP_563727  decreased coverage  3.29749e-08  n/a    Shewanella denitrificans OS217  Bacteria 
 
 
-
 
Sden_2735  CDS  NC_007954  3277299  3278936  1638  glucose-6-phosphate isomerase  YP_563737  decreased coverage  3.81745e-07  n/a    Shewanella denitrificans OS217  Bacteria 
 
 
-
 
Sden_2736  CDS  NC_007954  3279124  3279303  180  hypothetical protein  YP_563738  decreased coverage  1.7749e-06  n/a    Shewanella denitrificans OS217  Bacteria 
 
 
-
 
Sden_2884  CDS  NC_007954  3445272  3446411  1140  aminoglycoside phosphotransferase  YP_563886  decreased coverage  1.6497e-09  n/a    Shewanella denitrificans OS217  Bacteria 
 
 
-
 
Sden_2886  CDS  NC_007954  3449000  3450304  1305  PpiC-type peptidyl-prolyl cis-trans isomerase  YP_563888  decreased coverage  3.30996e-09  n/a    Shewanella denitrificans OS217  Bacteria 
 
 
-
 
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