| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_0273 |
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| Symbol | |
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| ID | 4020404 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella denitrificans OS217 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007954 |
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| Strand | - |
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| Start bp | 309227 |
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| End bp | 311038 |
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| Gene Length | 1812 bp |
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| Protein Length | 603 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 637954255 |
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| Product | LppC putative lipoprotein |
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| Protein accession | YP_561292 |
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| Protein GI | 91791641 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG3107] Putative lipoprotein |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.0000000539466 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAATTCAG CAAAAATAAT CGGCGCAGTC ATCTTAGCCA CTGTGTTGTT CGGCTGTGCT
TCACAAACGC AAGTGAAACA GCCTGCGCTC AGTGCATCAT TAGGTTCGGC GACTCATAAG
CCTACGGCTT ATCTTGCTGA AGCCTCAAAT GCCAAATTGC CGGAAAAACG CGATCGCTAC
CGGCTATTGG CGGCTCATGC CTATATTAAC GATGGCAATT ATGTCGCTGC AGAAAAAGTG
CTTAATGCCA TGCTCAAAGA CAGGGTGCAA GAACATACCC TGTTGGCCGA GCATATTTAC
TTAAGCGCCC GTATCGCCGA GCAAATTGCC GGCCATGATG CTGCACTCGC CTTGCTGGAT
TACCCGCCCC ATTGGCAATT ACCACAGAGC CAGAAGATCA CCTATCACAG GTATAAGGCA
CGGCTTTATA AACAAGCTAA TCTTCCCATA GATCAAGTGC GTCAATTAAG CTTGTTAAGC
ACTTTTTTGC CTAGCTTCGA AGCGGCTAAG GTTAGTGACA CCATATGGAA TATTTTACAA
CCTTTACATG AGGATACCGT AAAGGGCTTC GCTAAAGATG CCCTTAATCC GACGTTTGCC
GGTTGGTTGC AATTAGCCTA TATCGCCAAG CACTATGCGG TTGACCCCAA TCAATTAGTG
CTTCATTTAG GTCAATGGCA GCGTAATAAC CCCTACCACA CAGCAGCGGT TAAATTGCCG
TCAGATCTTG AAAAAGCCCT TAATGCTAAG CCGTTTAGAC CTAAGAACAT TGCCGTACTA
CTGCCTTTGA GTGGTCCACG CGCCGCCGTT GCCGAGCCAA TTCGTTTAGG GATTTTATCT
AGCTATCAAT CACAGTTTGA TAGTAAAGCC AGCGTGAACT TTTATGATAC TCAGCTAGGT
ATAGAGCAGG CCTATCAGCA AGCCGTCAGC GCTGGCGCCG AGTTTGTCAT AGGACCATTA
TTGCCTGAAG AAGTGGAGAA ACTGCAGAAC CTGAATGATA AAGGCAAATT ATTGTTGCCA
CAGTTGTTCT TAAATCAAAC CGACAATTTC ACCCCCAAAG CACACCAATT TTATTTCTCG
TTATCGCCCG CTCAAGAGGC CAGTGATGCG GCCCGTAAAT TATTCCAAGA TGGCATAAAC
TTGCCGTTAT TATTGGTCAG TAACGACCCT GTGGGCAAAC GTATGGCTGA AAGCTTCAAT
CAGGCATGGT TTGGCCTGAC TCAGTCCAAT GCCGAGATCC ACTATTATAA TCCTGGCGAT
CAGATGAAAC TGACAGTACA GGAAGCCTTA GGTGTCAAAG ACAGTGTGGC ACGCATCGAC
AGAATGAAAG CCTTACTGGG TAATAAGCTG GAAGCAGATT TTCGCTCACG TCGCGACATC
GATGCCATCT ACATGGTGTC AGCCGCGCAA GATTTGTCAT TGCTAAAAGC CTTCTTGGAC
GTGAACTTCA GCGTATTTGC CAAACCTGTG GCACTGTACA CCACCAGCCG CAGTCGTCTT
GAAAATGACT CAGGTCAAGC GGTACAAGAA CTCAATAAGT TAATGATAAG CGACATTCCT
TGGTTAATGC GTGACAGCAG TGAGACCCGC ATGGTCAATG AACTCTGGGC ACAATGGAGT
TACAGCCAAA AACGCCTCTA TATCATGGGT TTTGACGCCT TAGATCTGGT GAACCGTTTA
GCTCAGATGC GCGCTTTCCC AGGGTTCCAG TTTAATGGGC GTAGTGGTGC CTTGTCGGTA
AAACCCAATG GTGTCATTGA ACGTCAACTC AGCTGGGGAC GCTACCAGCA AGGGGTATTA
ACGCCTCAAT GA
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| Protein sequence | MNSAKIIGAV ILATVLFGCA SQTQVKQPAL SASLGSATHK PTAYLAEASN AKLPEKRDRY
RLLAAHAYIN DGNYVAAEKV LNAMLKDRVQ EHTLLAEHIY LSARIAEQIA GHDAALALLD
YPPHWQLPQS QKITYHRYKA RLYKQANLPI DQVRQLSLLS TFLPSFEAAK VSDTIWNILQ
PLHEDTVKGF AKDALNPTFA GWLQLAYIAK HYAVDPNQLV LHLGQWQRNN PYHTAAVKLP
SDLEKALNAK PFRPKNIAVL LPLSGPRAAV AEPIRLGILS SYQSQFDSKA SVNFYDTQLG
IEQAYQQAVS AGAEFVIGPL LPEEVEKLQN LNDKGKLLLP QLFLNQTDNF TPKAHQFYFS
LSPAQEASDA ARKLFQDGIN LPLLLVSNDP VGKRMAESFN QAWFGLTQSN AEIHYYNPGD
QMKLTVQEAL GVKDSVARID RMKALLGNKL EADFRSRRDI DAIYMVSAAQ DLSLLKAFLD
VNFSVFAKPV ALYTTSRSRL ENDSGQAVQE LNKLMISDIP WLMRDSSETR MVNELWAQWS
YSQKRLYIMG FDALDLVNRL AQMRAFPGFQ FNGRSGALSV KPNGVIERQL SWGRYQQGVL
TPQ
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