Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sden_0273 |
Symbol | |
ID | 4020404 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella denitrificans OS217 |
Kingdom | Bacteria |
Replicon accession | NC_007954 |
Strand | - |
Start bp | 309227 |
End bp | 311038 |
Gene Length | 1812 bp |
Protein Length | 603 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 637954255 |
Product | LppC putative lipoprotein |
Protein accession | YP_561292 |
Protein GI | 91791641 |
COG category | [R] General function prediction only |
COG ID | [COG3107] Putative lipoprotein |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 1 |
Plasmid unclonability p-value | 0.0000000539466 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAATTCAG CAAAAATAAT CGGCGCAGTC ATCTTAGCCA CTGTGTTGTT CGGCTGTGCT TCACAAACGC AAGTGAAACA GCCTGCGCTC AGTGCATCAT TAGGTTCGGC GACTCATAAG CCTACGGCTT ATCTTGCTGA AGCCTCAAAT GCCAAATTGC CGGAAAAACG CGATCGCTAC CGGCTATTGG CGGCTCATGC CTATATTAAC GATGGCAATT ATGTCGCTGC AGAAAAAGTG CTTAATGCCA TGCTCAAAGA CAGGGTGCAA GAACATACCC TGTTGGCCGA GCATATTTAC TTAAGCGCCC GTATCGCCGA GCAAATTGCC GGCCATGATG CTGCACTCGC CTTGCTGGAT TACCCGCCCC ATTGGCAATT ACCACAGAGC CAGAAGATCA CCTATCACAG GTATAAGGCA CGGCTTTATA AACAAGCTAA TCTTCCCATA GATCAAGTGC GTCAATTAAG CTTGTTAAGC ACTTTTTTGC CTAGCTTCGA AGCGGCTAAG GTTAGTGACA CCATATGGAA TATTTTACAA CCTTTACATG AGGATACCGT AAAGGGCTTC GCTAAAGATG CCCTTAATCC GACGTTTGCC GGTTGGTTGC AATTAGCCTA TATCGCCAAG CACTATGCGG TTGACCCCAA TCAATTAGTG CTTCATTTAG GTCAATGGCA GCGTAATAAC CCCTACCACA CAGCAGCGGT TAAATTGCCG TCAGATCTTG AAAAAGCCCT TAATGCTAAG CCGTTTAGAC CTAAGAACAT TGCCGTACTA CTGCCTTTGA GTGGTCCACG CGCCGCCGTT GCCGAGCCAA TTCGTTTAGG GATTTTATCT AGCTATCAAT CACAGTTTGA TAGTAAAGCC AGCGTGAACT TTTATGATAC TCAGCTAGGT ATAGAGCAGG CCTATCAGCA AGCCGTCAGC GCTGGCGCCG AGTTTGTCAT AGGACCATTA TTGCCTGAAG AAGTGGAGAA ACTGCAGAAC CTGAATGATA AAGGCAAATT ATTGTTGCCA CAGTTGTTCT TAAATCAAAC CGACAATTTC ACCCCCAAAG CACACCAATT TTATTTCTCG TTATCGCCCG CTCAAGAGGC CAGTGATGCG GCCCGTAAAT TATTCCAAGA TGGCATAAAC TTGCCGTTAT TATTGGTCAG TAACGACCCT GTGGGCAAAC GTATGGCTGA AAGCTTCAAT CAGGCATGGT TTGGCCTGAC TCAGTCCAAT GCCGAGATCC ACTATTATAA TCCTGGCGAT CAGATGAAAC TGACAGTACA GGAAGCCTTA GGTGTCAAAG ACAGTGTGGC ACGCATCGAC AGAATGAAAG CCTTACTGGG TAATAAGCTG GAAGCAGATT TTCGCTCACG TCGCGACATC GATGCCATCT ACATGGTGTC AGCCGCGCAA GATTTGTCAT TGCTAAAAGC CTTCTTGGAC GTGAACTTCA GCGTATTTGC CAAACCTGTG GCACTGTACA CCACCAGCCG CAGTCGTCTT GAAAATGACT CAGGTCAAGC GGTACAAGAA CTCAATAAGT TAATGATAAG CGACATTCCT TGGTTAATGC GTGACAGCAG TGAGACCCGC ATGGTCAATG AACTCTGGGC ACAATGGAGT TACAGCCAAA AACGCCTCTA TATCATGGGT TTTGACGCCT TAGATCTGGT GAACCGTTTA GCTCAGATGC GCGCTTTCCC AGGGTTCCAG TTTAATGGGC GTAGTGGTGC CTTGTCGGTA AAACCCAATG GTGTCATTGA ACGTCAACTC AGCTGGGGAC GCTACCAGCA AGGGGTATTA ACGCCTCAAT GA
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Protein sequence | MNSAKIIGAV ILATVLFGCA SQTQVKQPAL SASLGSATHK PTAYLAEASN AKLPEKRDRY RLLAAHAYIN DGNYVAAEKV LNAMLKDRVQ EHTLLAEHIY LSARIAEQIA GHDAALALLD YPPHWQLPQS QKITYHRYKA RLYKQANLPI DQVRQLSLLS TFLPSFEAAK VSDTIWNILQ PLHEDTVKGF AKDALNPTFA GWLQLAYIAK HYAVDPNQLV LHLGQWQRNN PYHTAAVKLP SDLEKALNAK PFRPKNIAVL LPLSGPRAAV AEPIRLGILS SYQSQFDSKA SVNFYDTQLG IEQAYQQAVS AGAEFVIGPL LPEEVEKLQN LNDKGKLLLP QLFLNQTDNF TPKAHQFYFS LSPAQEASDA ARKLFQDGIN LPLLLVSNDP VGKRMAESFN QAWFGLTQSN AEIHYYNPGD QMKLTVQEAL GVKDSVARID RMKALLGNKL EADFRSRRDI DAIYMVSAAQ DLSLLKAFLD VNFSVFAKPV ALYTTSRSRL ENDSGQAVQE LNKLMISDIP WLMRDSSETR MVNELWAQWS YSQKRLYIMG FDALDLVNRL AQMRAFPGFQ FNGRSGALSV KPNGVIERQL SWGRYQQGVL TPQ
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