| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_2022 |
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| Symbol | |
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| ID | 4018514 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella denitrificans OS217 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007954 |
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| Strand | + |
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| Start bp | 2397418 |
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| End bp | 2398974 |
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| Gene Length | 1557 bp |
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| Protein Length | 518 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 637956047 |
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| Product | lytic transglycosylase, catalytic |
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| Protein accession | YP_563028 |
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| Protein GI | 91793377 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG4623] Predicted soluble lytic transglycosylase fused to an ABC-type amino acid-binding protein |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.0000000299101 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGATCAA CAAGTTACTT AATTGCTGGC GGCTTAGCCT TCCTCGCAGG GTGCCAAACC
TTGCCCCAGA AGCAGACTCA AACTCAAGCT GCTTCAGTAG AGGAAACCAT TGAATACAAG
CGTAAACCCA CAGGCAATCA GAGCCTAGAA CGTATTCAAG AAGATGTGGT TCAAACCCAG
AATTTATGGA GCAAACTTGC ACAAGAGATG CAACTGCCCA TAGCAGATAA CGCCTTAATC
GAAGAATACC GTCAGTGGTA TATCAAGCAC CCTAAGCATT TAAGGATTAT TTCAAAGCGC
GCTGCGCCTT TTTTACAATA CATAATTGCC GAGCTCGAAA AAAATAATCT ACCGTTAGAA
TTAGCGCTAT TACCTATCGT TGAGAGTGCA TATAACCCCA AAGCCGTGTC ACCGGGTAAA
GCCGCCGGAT TATGGCAACT AACCTTGCCA ACGGCGGGTA ATTTGGGCAT CAAGATGAAC
TGGTGGTATG ACGGTCGTCA AGATGTTGCG GCCTCAACCG CTGCTGCTAT CAAGTTATTA
ACTTACCTGC ATAAAAAAAT GGATAACAAC TGGTTATATG CAGTTGCCGC CTATAACACA
GGTGAAGGCC GAGTGCTTTC AGCCATTAAA CACAATCAAG CCCGAGACAA ATCCAGTGAT
TTTTGGTCAC TGTCATTGCC TAAAACGACG CGTCATTATG TGCCGCAATT ATTGGCATTA
GCCGATGTAA TTAAAAATGC TGACAAATAT GGCATTAAGT TAACCCCAAT TAACGATATT
CCTAGATTGA CCTTAGTGAA TATTGAATCA CAGATGGATT TATCCTTAGC CGCCGAGATG
GCGCAAATTT CTGTGGAAGA ATTAAAAGCC ATTAACCCTG GTTTGAACCG CTGGGCGACC
TCACCTGTAG GTCCACACCA GTTATTTGTC CCTGCAGAAA AGGCCAAAGT CTTTAACCAA
GCACTGGCCA AAGTGGACAA TGAATCTAAA TTGAACTGGG TACGTTATAA GATTAAATCC
GGTGATAGCA TAAGTAAAAT TGCCGATCAG TTTGAGACCA GTGCCAAACT TATCCGCTCC
AGTAACGGGC TTAATGGCAA TAATATTGTT GCCGGCCGCT ATTTGATTAT TCCTGTAGCA
GGTAAAGATC CCGATCTTGC TAGCCTATCG AACGATCAAG TTATCGCCAG ACGTCCTCAG
GTTAAAACCA GTAACGCTAA ACTCGTGCAC ACCATTAAAT CTGGCGATTC TTTATGGGAA
ATAGCCAAAA AATATGGCGT AAGCATTCCT CAGATCTCTA AATGGAATAA CCTTACTATG
AGCTCGCGTC TGCAAATTGG TCGAGATCTT ACTATTTGGC TCAATGAAAC CAGCGCAGCC
CAAGCATCAC GTATCGTCAA CTACAAGGTT CGTTCAGGTG ACTCCTTGGC GCGTATTGCG
GCCAAATATA AAGTCTCAGT CGCTGAATTA GTAGAATGGA ACAGCCTACA GAAAAACAAG
TACCTGCAAC CGGGTCAAAT ATTGAAGCTT GTTATCGACA ATCAAGCGAC CTCATAA
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| Protein sequence | MRSTSYLIAG GLAFLAGCQT LPQKQTQTQA ASVEETIEYK RKPTGNQSLE RIQEDVVQTQ
NLWSKLAQEM QLPIADNALI EEYRQWYIKH PKHLRIISKR AAPFLQYIIA ELEKNNLPLE
LALLPIVESA YNPKAVSPGK AAGLWQLTLP TAGNLGIKMN WWYDGRQDVA ASTAAAIKLL
TYLHKKMDNN WLYAVAAYNT GEGRVLSAIK HNQARDKSSD FWSLSLPKTT RHYVPQLLAL
ADVIKNADKY GIKLTPINDI PRLTLVNIES QMDLSLAAEM AQISVEELKA INPGLNRWAT
SPVGPHQLFV PAEKAKVFNQ ALAKVDNESK LNWVRYKIKS GDSISKIADQ FETSAKLIRS
SNGLNGNNIV AGRYLIIPVA GKDPDLASLS NDQVIARRPQ VKTSNAKLVH TIKSGDSLWE
IAKKYGVSIP QISKWNNLTM SSRLQIGRDL TIWLNETSAA QASRIVNYKV RSGDSLARIA
AKYKVSVAEL VEWNSLQKNK YLQPGQILKL VIDNQATS
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