Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sden_0445 |
Symbol | |
ID | 4017216 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella denitrificans OS217 |
Kingdom | Bacteria |
Replicon accession | NC_007954 |
Strand | - |
Start bp | 515431 |
End bp | 516399 |
Gene Length | 969 bp |
Protein Length | 322 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 637954431 |
Product | dihydrouridine synthase TIM-barrel protein nifR3 |
Protein accession | YP_561460 |
Protein GI | 91791809 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0042] tRNA-dihydrouridine synthase |
TIGRFAM ID | [TIGR00737] putative TIM-barrel protein, nifR3 family |
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Plasmid Coverage information |
Num covering plasmid clones | 2 |
Plasmid unclonability p-value | 0.0000000152787 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCAAATTG GCCCCTATCA ACTGAAGAAT CAGCTGATCG TGGCACCAAT GGCAGGTGTC ACAGATCAAG CCTTTCGAAA CCTCTGTTTA CGTTATGGTG CAGCCTTAGC CGTTTCAGAG ATGCTTTCCT CTAATCCCGA AGTATGGGAC ACAGAGAAAA GCCGCCAGCG CATGACACAC TCTGGTGAAG AAGGTATACG CTCAGTACAA ATTGCCGGCG CCGATCCTGA TTTAATGGCC AATGCCGCTC AGTTCAATGT TGAACAAGGC GCGCATATCA TTGATATCAA CATGGGTTGT CCAGCGAAAA AAGTGAATAA AAAATTTGCA GGCTCAGCAT TGATGCAAGA TCCCGCGCTA GTAAAAGACA TTTTACAAGC CGTGGTTGCC GCAGTAGATG TGCCTGTCAC CTTAAAAATT CGCACAGGTT GGGATCCTGA ACACAAGAAT GGTGTTCAAA TCGCCCAGAT TGCCCAAGAT TGTGGCATTG CCTCCCTCGC CGTTCACGGC AGAACGCGGC AATGTATGTA TAAAGGCTTT GCCGAGTACG ACACGATAAA AGCAATAAAA CAGAATATCT CTATTCCTGT TGTCGCCAAT GGAGACATAG ACAGTCCAGA GAAAGCGCGG TTTGTGCTTG ATTACACTGG CGTCGATGCC CTGATGATAG GACGAGGTGC CCAAGGACGG CCATGGATTT TTAAAGAGAT CCAGCACTAC TTGGAAACAG GTAAAAAATT AGCGCCCATT GAGATACACG AGCAACGACT TGTCATGCTC GAGCATCTAA CCAAACTGTA TGAATTGTAT GGCGAATATA AAGGTGTCCG CTTCGCCAGA AAGCATACGG GATGGTATTT AAACCAAGAG GAACAGCGCC AATTTCGTGC TGACTTCAAT CGGCTCGAAA GCGCTGACCA GCAATATTCC CTAGTGGAAT GTTATTTTGA TGAATTAGTA AAAAATTAA
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Protein sequence | MQIGPYQLKN QLIVAPMAGV TDQAFRNLCL RYGAALAVSE MLSSNPEVWD TEKSRQRMTH SGEEGIRSVQ IAGADPDLMA NAAQFNVEQG AHIIDINMGC PAKKVNKKFA GSALMQDPAL VKDILQAVVA AVDVPVTLKI RTGWDPEHKN GVQIAQIAQD CGIASLAVHG RTRQCMYKGF AEYDTIKAIK QNISIPVVAN GDIDSPEKAR FVLDYTGVDA LMIGRGAQGR PWIFKEIQHY LETGKKLAPI EIHEQRLVML EHLTKLYELY GEYKGVRFAR KHTGWYLNQE EQRQFRADFN RLESADQQYS LVECYFDELV KN
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